Life Sciences Commons^™

Zyxin Regulates Epithelial-Mesenchymal Transition By Mediating Actin-Membrane Linkages At Cell-Cell Junctions, Liv Rebecca Sperry

Theses and Dissertations

Development is punctuated by morphogenetic rearrangements of epithelial tissues, including complete detachment of individual motile cells during epithelial-mesenchymal transition (EMT). Dramatic actin rearrangements occur as cell-cell junctions are dismantled and cells become independently motile during EMT. Characterizing dynamic actin rearrangements and identifying actin machinery driving these rearrangements is essential for understanding basic mechanisms of cell-cell junction remodeling; yet, neither the precise series of actin rearrangements at cell-cell junctions that accompany EMT, nor the machinery that controls actin rearrangement during EMT, have been identified. This work represents a detailed study of junctional actin reorganization in cells undergoing EMT, identifies actin regulatory …

The Effects Of Whole Body Vibration Platform Training On Hamstring Flexibility, Travis A. Epperson

Theses and Dissertations

Introduction: Very few studies have looked at the effect of vibration on flexibility, and no studies exist that have looked at stretching concurrently with whole body vibration (WBV) training. Therefore, the purpose of this study was to determine if whole-body-vibration training (WBV) done concurrently with static stretch (SV) is more effective than static stretching alone (SS), and to see if WBV training independently (SQ) improves hamstring flexibility without stretching. A secondary purpose of this study is to determine if retention of flexibility gains are maintained. Methods: Forty-four subjects (31 men, 13 women) completed this study (age 22.5 ± 1.8 years; …

The Effects Of Abdominal Training On Postural Control, Lower Extremity Kinematics, Kinetics, And Muscle Activation, Matthew J. Gage

Theses and Dissertations

Context: Abdominal training may decrease the risk of lower extremity injuries through improved balance and postural control. Objective: To determine the effect of an eight-week abdominal-training program on center of pressure, lower extremity joint angles, and abdominal muscle activation during a single-leg drop landing. The effects of abdominal training on abdominal muscle thickness was assessed. Design: A cohort research design. Setting: Research laboratory. Other Participants: Sixty healthy physically active college-aged students participated. They were divided into three groups: Control, Chronic ankle instability (CAI), and Healthy. Nineteen Control (age = 22.0 ± 2.72 yrs, mass = 74.1 ± 13.8 kg, height …

Changes In Bone Mineral Density In Middle-Age Women According To Physical Activity Volume, Intensity, And Cardiorespiratory Fitness: A Six-Year Prospective Study, Neil R. Nokes

Theses and Dissertations

This study was conducted to determine if physical activity and cardiorespiratory fitness (CRF) at baseline influence the likelihood of gaining bone mineral density (BMD) at the hip and lumbar spine over 6 years. Another aim was to ascertain the effect of several potential confounding factors. In a prospective study of 244 women (baseline age range 35-45 years), physical activity volume (PAv) and intensity (PAi) were measured using accelerometers at baseline. CRF indexed by VO2max was estimated using a graded, maximal treadmill test at baseline. BMD was measured using DEXA. Risk ratios were used to show the likelihood of BMD gains …

Marrying Immunotherapy And Chemotherapy: A Cancer Therapy Based On T Lymphocyte Expansion Augmented By Alternate Gamma Chain Cytokines And Gemcitabine-Mediated Inhibition Of Myeloid Derived Suppressor Cells, Esther Cha

Theses and Dissertations

Successful adoptive immunotherapy (AIT) for cancer relies on the infusion of in vitro expanded, tumor-reactive lymphocytes with a goal of generating productive tumor immunity. Previously, our lab has developed a protocol to activate selectively tumor-reactive T lymphocytes in vitro using two pharmacologic agents, bryostatin-1 and ionomycin. Following the pharmacological stimulation, conventionally, IL-2 is added to stimulate in vitro proliferation. In this report, alternate cytokines from the common cytokine receptor γ-chain family, namely IL-7 and IL-15, were explored as the alternative cytokine supplements. We found that tumor DLN cells activated in vitro with B/I and cultured in IL-7/15 alternate common γ-chain …

Verbena Stricta Vent., John E. Ebinger

Specimens by Name

No abstract provided.

The Effects Of Fluorescent Tracking Powder On Oxygen Consumption In Salamanders Using Either Cutaneous Or Bimodal Respiration, Sarah A. Orlofske, Kristine L. Grayson, William A. Hopkins

Biology Faculty Publications

Fluorescent powder is gaining attention as an effective method for tracking terrestrial amphibian movements, particularly for species that are too small for conventional tracking equipment. The technique requires coating portions of an animal with fluorescent powder, releasing the animal, and following the trail of powder as it is progressively lost during movement. Recent studies have shown that fluorescent powder has no negative effects on survival or growth. However, a substance that coats the skin, a major respiratory organ in most amphibians, may have sublethal effects on performance and consequently behavior. We tested the effect of fluorescent powder application on the …

Thermal Tolerance Of The Coffee Berry Borer Hypothenemus Hampei: Predictions Of Climate Change Impact On A Tropical Insect Pest, Juliana Jaramillo, Adenirin Chabi-Olaye, Charles Kamonjo, Alvaro Jaramillo, Fernando E. Vega, Hans Michael Poehling, Christian Borgemeister

All Peer-Reviewed Publications

Coffee is predicted to be severely affected by climate change. We determined the thermal tolerance of the coffee berry borer , Hypothenemus hampei, the most devastating pest of coffee worldwide, and make inferences on the possible effects of climate change using climatic data from Colombia, Kenya, Tanzania, and Ethiopia. For this, the effect of eight temperature regimes (15, 20, 23, 25, 27, 30, 33 and 35°C) on the bionomics of H. hampei was studied. Successful egg to adult development occurred between 20-30°C. Using linear regression and a modified Logan model, the lower and upper thresholds for development were estimated at …

A Decomposition Of The Pure Parsimony Problem, Allen Holder, Thomas M. Langley

Mathematical Sciences Technical Reports (MSTR)

We partially order a collection of genotypes so that we can represent the problem of inferring the least number of haplotypes in terms of substructures we call g-lattices. This representation allows us to prove that if the genotypes partition into chains with certain structure, then the NP-Hard problem can be solved efficiently. Even without the specified structure, the decomposition shows how to separate the underlying integer programming model into smaller models.

Bridging Functional Genomics And Toxicogenomics Through Dna Microarrays In A Fish Model, Shuzhao Li

Dissertations

In a case study of finding gene expression signatures for environmental stressors in Cyprinodon variegatus, this dissertation examines several important issues of applying DNA microarray technology to fish toxicogenomics. The most relevant disciplines, fish toxicogenomics and computational systems biology are reviewed in Chapter 1. Chapter 2 reviews major aspects of DNA microarray technology.

On DNA microarrays, even for probes that target the same transcript, large variations are seen in the probe signals. These variations are partly dependent and partly independent on probe sequences. Chapter 3 estimates the sequence independent variation by combining experimental and computational approaches. Chapter 4 and …

Characterization Of Γ-Butyrolactone Autoregulatory Signaling Gene Homologs In The Angucyclinone Polyketide Ws5995b Producer Streptomyces Acidiscabies, Frank G. Healy, Kevin P. Eaton, Prajit Limsirichai, Joel F. Aldrich, Alaina K. Plowman, Russell R. King

Biology Faculty Research

Organisms belonging to the genus Streptomyces produce numerous important secondary metabolites and undergo a sophisticated morphological differentiation program. In many instances these processes are under the control of gamma-butyrolactone (GBL) autoregulatory systems. Streptomyces acidiscabies strain 84.104 produces the secondary metabolite aromatic angucyclinone polyketide WS5995B. In order to explore the role of GBL regulatory circuitry in WS5995B production and morphogenesis in S. acidiscabies, a gene cluster encoding GBL autoregulatory signaling homologs was identified and characterized. Two GBL receptor homologs, sabR and sabS, were found flanking a GBL synthase homolog sabA. Strains carrying mutations in sabS produced elevated levels …

A Proposed Syntax For Minimotif Semantics, Version 1., Jay Vyas, Ronald J. Nowling, Mark W. Maciejewski, Sanguthevar Rajasekaran, Michael R. Gryk, Martin R. Schiller

Life Sciences Faculty Research

BACKGROUND:

One of the most important developments in bioinformatics over the past few decades has been the observation that short linear peptide sequences (minimotifs) mediate many classes of cellular functions such as protein-protein interactions, molecular trafficking and post-translational modifications. As both the creators and curators of a database which catalogues minimotifs, Minimotif Miner, the authors have a unique perspective on the commonalities of the many functional roles of minimotifs. There is an obvious usefulness in standardizing functional annotations both in allowing for the facile exchange of data between various bioinformatics resources, as well as the internal clustering of sets of …

Assessment Of The Endangered Species Podarcis Carbonelli On A Microgeographic Scale: A Molecular, Morphological And Physiological Approach, Maria Clara Figueirinhas Do Amaral

Masters Theses & Specialist Projects

The lizard Podarcis carbonelli is an endangered species endemic to the Iberian Peninsula. One location where this species occurs is at the Berlengas Natural Preserve, an Atlantic archipelago off the coast of Portugal. These island populations are geographically separated from nearby mainland populations. The fundamental question is, are these insular individuals distinct from the mainland populations? Four localities were chose for comparison: two island populations and two nearby coastal populations. We assessed this question using three distinct approaches: molecular, morphological and physiological approach. We sequenced the 12S RNA, the mtDNA Control Region and the 7th intron of the !-fibrinogen gene …

Searching For The Binding Partners For The Novel Phkg1 Variant Γ 181, Kishore Polireddy

Masters Theses & Specialist Projects

No abstract provided.

Esperance Area Acid Sulfate Soil Hazard Mapping, Paul Galloway, Simon Clarendon

Resource management technical reports

This project created a regional scale (1:100 000) acid sulfate soil (ASS) hazard map for the Lake Warden and Esperance town areas, using a combination of existing soil-landscape mapping information and elevation data, supported by field observations and laboratory data from 18 soil cores and 29 additional borelogs with descriptive information useful for identifying ASS and potential ASS materials. All data gathered during this project used common standards and protocols developed in Australia for identifying and mapping ASS materials. The project extends the mapping for acid sulfate soil in the region, complementing existing maps compiled for other parts of the …

Kentucky Warbler (Vol. 85, No. 3), Kentucky Library Research Collections

The Kentucky Warbler

No abstract provided.

On The Prediction Of Extreme Ecological Events, Mark W. Denny, Luke J. H. Hunt, Luke P. Miller, Christopher D. G. Harley

Faculty Publications, Biological Sciences

Ecological studies often focus on average effects of environmental factors, but ecological dynamics may depend as much upon environmental extremes. Ecology would therefore benefit from the ability to predict the frequency and severity of extreme environmental events. Some extreme events (e.g., earthquakes) are simple events: either they happen or they don't, and they are generally difficult to predict. In contrast, extreme ecological events are often compound events, resulting from the chance coincidence of run-of-the-mill factors. Here we present an environmental bootstrap method for resampling short-term environmental data (rolling the environmental dice) to calculate an ensemble of hypothetical time series that …

The Effects Of Repeated Anaerobic Bouts On Immune Parameters, James C. Sivley

Masters Theses & Specialist Projects

To date, the exercise-induced immune response in has only been evaluated in subjects performing aerobic exercise. The primary purpose of this study is to determine if repeated bouts of anaerobic exercise will induce a similar immune response in human subjects as exhibited by aerobic exercise. Secondary to immune function, an analysis of performance from trial to trial will be made. Nine males between the ages of 18-25 were selected on a volunteer basis to participate in this study. Subjects performed Wingate tests set in 3 series with 120 seconds between trials within series and 405 seconds between series for an …

Forage News [2009-08], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• KFGC Field Day is September 3
• Forage Spokesman Nominations
• UK All Commosity Field Day
• Charles Powell National Hay Winner
• Check 2008 Variety Trial Reports Before Buying Seed
• What Does the Intensive in Intensive Grazing Mean
• Grazing and Eliminative Behavior of Horses Grazing Bermudagrass
• Results of the 1st Year for a Grazing Evaluation of KYFA9302 Tall Fescue, With and Without the AR584 Novel Endophyte
• Cutting Ash Content
• Late Summer Nitrogen Applications to Pastures - Will They Pay This Year?
• Upcoming Events

Preference And Usage Of Pasture Versus Free-Stall Housing By Lactating Dairy Cattle, A. L. Legrand, M. A. G. Von Keyserlingk, D. M. Weary

Housing and Confinement of Farm Animals Collection

The aim of the current study was to assess if cows preferred pasture or indoor housing, and how diurnal and environmental factors affected this preference. Lactating dairy cows (n = 5 groups, each containing 5 cows) were sequentially housed either in a free-stall barn on pasture, or given the choice between the 2 environments. Each group was tested 3 times under each condition, for a total of 21 d, to assess the effects of varying climatic conditions (outdoor temperature ranged from 9.9 to 28.2°C and daily rainfall from 0 to 65 mm/d over the course of the experiment). When provided …

Preference For Pasture Versus Freestall Housing By Dairy Cattle When Stall Availability Indoors Is Reduced, A. C. Falk, D. M. Weary, C. Winckler, M. A. G. Von Keyserlingk

Housing and Confinement of Farm Animals Collection

Providing cattle with access to pasture has been shown to yield benefits, including access to more space, fewer agonistic interactions, better air quality, and the ability to perform a greater range of normal behaviors. Preference for pasture appears to depend on several parameters, including weather conditions and availability of shade. The primary aim of this study was to evaluate the preference for pasture versus inside a freestall barn with variable stocking densities at the stalls. We also investigated the effect of temperature-humidity index (THI) and precipitation on this preference. Overall, cows spent on average 13.7 ± 2.6 h/d (mean ± …

Nesfatin-1 Exerts Cardiovascular Actions In Brain: Possible Interaction With The Central Melanocortin System, Gina L.C. Yosten, Willis K. Samson

Biological Sciences Faculty Research & Creative Works

Nesfatin-1 is a recently discovered hypothalamic peptide that was shown to suppress food intake through a melanocortin-3/4 receptor-dependent mechanism. Since nesfatin-1 mRNA is detected in the paraventricular nucleus of the hypothalamus, and because many peptides that alter food intake also influence cardiovascular function, we tested the ability of centrally administered nesfatin-1 to affect mean arterial pressure (MAP) in conscious, freely moving rats. Significant increases in MAP were observed following intracerebroventricular administration of nesfatin-1. Pretreatment with either the melanocortin-3/4 receptor antagonist, SHU9119 (intracerebroventricular), or the α-adrenergic antagonist, phentolamine (intra-arterial), abrogated the rise in MAP induced by nesfatin-1, indicating that nesfatin-1 may …

Phospholipase Dα1 And Phosphatidic Acid Regulate Nadph Oxidase Activity And Production Of Reactive Oxygen Species In Aba-Mediated Stomatal Closure In Arabidopsis, Xuemin Wang, Yanyan Zhang, Huiying Zhu, Qun Zhang, Maoyin Li, Min Yan, Rong Wang, Liling Wang, Ruth Welti, Wenhua Zhang

Biology Department Faculty Works

We determined the role of Phospholipase Dα1 (PLDα1) and its lipid product phosphatidic acid (PA) in abscisic acid (ABA)-induced production of reactive oxygen species (ROS) in Arabidopsis thaliana guard cells. The pldα1 mutant failed to produce ROS in guard cells in response to ABA. ABA stimulated NADPH oxidase activity in wild-type guard cells but not in pldα1 cells, whereas PA stimulated NADPH oxidase activity in both genotypes. PA bound to recombinant Arabidopsis NADPH oxidase RbohD (respiratory burst oxidase homolog D) and RbohF. The PA binding motifs were identified, and mutation of the Arg residues 149, 150, 156, and 157 in …

Fisheries Research Report No. 194 - Conceptual Models For Ecosystem Based Fisheries Management (Ebfm) In Western Australia, Sarah J. Metcalf, D J. Gaughan, Jennifer Shaw

Fisheries Research Reports

The Department of Fisheries, Western Australia is currently developing a framework to assess the most appropriate methodologies for the implementation of Ecosystem Based Fisheries Management (EBFM) in Western Australia. The implementation of EBFM can be considered as an operational extension of Ecologically Sustainable Development (ESD), the principles of which were adopted by Western Australia for application in the management of fisheries in 2002. EBFM aims to assess and manage ecological impacts as well as social and economic outcomes related to fish and fisheries at a regional level. The degree to which EBFM will be implemented in terms of activities or …

Differential Expression Of Collagen Type V And Xi Α-1 In Human Ascending Thoracic Aortic Aneurysms, Julia Thom Oxford

Biomedical Research Institute Publications and Presentations

Background—The molecular mechanisms leading to ascending thoracic aortic aneurysms (ATAAs) remain unknown. We hypothesized that alterations in expression levels of specific fibrillar collagens occur during the aneurysmal process.

Methods—Surgical samples from ascending aortas from patients with degenerative ATAAs were subdivided by aneurysm diameter: small, 5 to 6 cm; medium, 6 to 7 cm; and large, greater than 7 cm; and compared with nonaneurysmal aortas (mean diameter, 2.3 cm).

Results—Histology, immunofluorescence, and electron microscopy demonstrated greater disorganization of extracellular matrix constituents in ATAAs as compared with control with an increase in collagen α1(XI) within regions of cystic medial …

Fisheries Management Paper No.245 - Aquaculture Of Coral, Live Rocks And Associated Products. Aquaculture Policy, Department Of Fisheries, Western Australia

Fisheries Management Papers

Aquarium enthusiasts use corals, live rock and associated products (e.g. live sand) for display and to maintain healthy water quality conditions in their marine aquariums. There is a large and growing market for these products. While the wild harvest fisheries for aquarium products in Western Australia are sustainably managed, output is capped, so increased product is needed to meet the market demand. With a trend towards the capping of wild harvest and additional pressures, such as the introduction of Marine Parks and other marine protected areas, the aquaculture of these products is set for industry development and expansion.

The large …

Geometric Build-Up Solutions For Protein Determination Via Distance Geometry, Robert Tucker Davis

Masters Theses & Specialist Projects

Proteins carry out an almost innumerable amount of biological processes that are absolutely necessary to life and as a result proteins and their structures are very often the objects of study in research. As such, this thesis will begin with a description of protein function and structure, followed by brief discussions of the two major experimental structure determination methods. Another problem that often arises in molecular modeling is referred to as the Molecular Distance Geometry Problem (MDGP). This problem seeks to find coordinates for the atoms of a protein or molecule when given only a set of pair-wise distances between …

Sagestep News, Summer/Fall 2009, No. 10, Sagestep

Newsletters

Seasonal newsletter of SageSTEP.

Evaluation Of Annotation Performances Between Automated And Curated Databases Of E.Coli Using The Correlation Coefficient, Reddysalilaja Marpuri

Masters Theses & Specialist Projects

This project compared the performance of the correlation coefficient to show similarities in annotations between a predictive automated bacterial annotation database and the curated EcoCyc database. EcoCyc is a conservative multidimensional annotation system that is exclusively based on experimentally validated findings by over 15,000 publications. The automated annotation system, used in the comparison was BASys. It is often used as a first pass annotation tool that tries to add as many annotations as possible by drawing upon over 30 information sources. Gene ontology served as one basis of comparison between these databases because of the limited common terms in the …

The Study Of Variations In The Properties Of Biodiesel On Addition Of Antioxidants, Hiranmayee Kandala

Masters Theses & Specialist Projects

This research studies variations in biodiesel upon addition of different concentrations of antioxidant and petrodiesel additives. Oxidation onset temperature, oxidation induction time, oxidative stability, thermal stability, crystallization onset temperature and moisture retention properties of the biodiesel, with and without antioxidants have been studied. Antioxidants like BHT, BHA, PrG, Vit E and Vit C were added to the biodiesel during the study. These samples were analyzed using the PDSC, TGA, DSC and TGA-SA instrumentation.

The results of this research show an improvement in the OOT, OIT and Oxidative stability of biodiesel with the addition of antioxidants and by blending the biodiesel …