Life Sciences Commons^™

Performance Of Solid-State Sensors For Continuous, Real-Time Measurement Of Soil Co2 Concentrations, Stephen L. Young, Francis J. Pierce, Jason D. Streubel, Harold D. Collins

West Central Research and Extension Center, North Platte

Recent advances in sensor technology provide a robust capability for continuous measurement of soil gases. The performance of solid-state CO₂ sensors (Model GMM220 series, Vaisala, Inc., Helsinki, Finland) was evaluated in laboratory, greenhouse, and irrigated winter wheat (Triticum aestivum L.). In ambient CO₂ concentration, the GMM222 sensor averaged 427 ± 8.3 μL L⁻¹. Under variable CO₂ concentrations, the sensor was slightly lower than concentrations measured with an infrared gas analyzer (IRGA). In greenhouse pots planted with triticale (Triticale hexaploide Lart.) and an agricultural field of irrigated winter wheat, soil CO₂ concentration exceeded …

Copper(Ii) Complexes Of Coumarin-Derived Schiff Bases And Their Anti-Candida Activity, Bernadette S. Creaven, Michael Devereux, Dariusz Karcz, Andrew Kellett, Malachy Mccann, Andy Noble, Maureen Walsh

Articles

The condensation of 7-amino-4-methyl-coumarin (1) with a number of substituted salicylaldehydes yielded a series of Schiff bases (2a–2k) in good yields. Subsequent reaction of these ligands with copper( II) acetate yielded Cu(II) complexes (3a–3k) and some were characterised using X-ray crystallography. All of the free ligands and their metal complexes were tested for their anti-Candida activity.

Characterization Of Two Outer Membrane Proteins, Flgo And Flgp, That Influence Vibrio Cholerae Motility, Raquel M. Martinez, Madushini N. Dharmasena, Thomas J. Kirn, Ronald K. Taylor

Dartmouth Scholarship

Vibrio cholerae is highly motile by the action of a single polar flagellum. The loss of motility reduces the infectivity of V. cholerae, demonstrating that motility is an important virulence factor. FlrC is the sigma-54-dependent positive regulator of flagellar genes. Recently, the genes VC2206 (flgP) and VC2207 (flgO) were identified as being regulated by FlrC via a microarray analysis of an flrC mutant (D. C. Morris, F. Peng, J. R. Barker, and K. E. Klose, J. Bacteriol. 190:231-239, 2008). FlgP is reported to be an outer membrane lipoprotein required for motility that functions as a colonization factor. The study reported …

Editorial Staff Change

Nebraska Bird Review

Steve Dinsmore has generously assisted the Nebraska Bird Review editors for nine years, and now he is bowing out. With this issue, Joe Gubanyi is the new technical editor of the NBR. Joe is a professor of biology in the Natural Science Department at Concordia University in Seward. He has a B.S. Ed. from Concordia, an M.S. and a Ph.D. in Wildlife Ecology from the University of Nebraska at Lincoln. He has taught biology, genetics, ecology, vertebrate zoology, and ornithology and has led study tours to Belize and Costa Rica. He is the compiler of the Branched Oak–Seward Christmas …

Summer Field Report, June-July 2009, W. Ross Silcock

Nebraska Bird Review

This was an interesting summer, with range expansions of multiple species continuing in all directions, but predominantly northward. Exceptions to the northward trend were Trumpeter Swan, which bred south of its usual western Sandhills range, and Sedge Wren, which may be occurring in June in northeast Nebraska in greater numbers. Moving eastward are Western Wood-Pewee, which now overlaps with westward-moving Eastern Wood-Pewee in Lincoln Co, Cordilleran Flycatcher in the Pine Ridge, and Lesser Goldfinch in the west. Song Sparrow is also expanding south and west. No fewer than 16 species are moving north and/or northwestward. Several species were seen more …

Behavioral Enhancement Of Onshore Transport By Postlarval Caribbean Spiny Lobster (Panulirus Argus), Jason S. Goldstein, Mark J. Butler Iv

Biological Sciences Faculty Publications

We conducted a series of laboratory experiments to examine the orientation, settlement, and metamorphosis of Caribbean spiny lobster (Panulirus argus) pueruli (postlarvae) in response to cues characteristic of their nursery in back-reef tropical lagoons. Our results suggest that pueruli were attracted to coastal water sources and the metabolites of red macroalgae (Laurencia spp.) when compared with oceanic water and artificial seawater treatments. Pueruli were not attracted to waterborne cues from sea grass, were repelled by hypersaline or hyposaline water, and discerned coastal cues from water collected as far as 30 km offshore from the reef. We also conducted experiments to …

The Cca Anticodon Specifies Separate Functions Inside And Outside Translation In Bacillus Cereus, Sandro F. Ataide, Theresa E. Rogers, Michael Ibba

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Bacillus cereus 14579 encodes two tRNAs with the CCA anticodon, tRNA^Trp and tRNA^Other. tRNA^Trp was separately aminoacylated by two enzymes, TrpRS1 and TrpRS2, which share only 34% similarity and display different catalytic capacities and specificities. TrpRS1 was 18-fold more proficient at aminoacylating tRNA^Trp with Trp, while TrpRS2 more efficiently utilizes the Trp analog 5-hydroxy Trp. tRNA^Other was not aminoacylated by either TrpRS but instead by the combined activity of LysRS1 and LysRS2, which recognized sequence elements absent from tRNA^Trp. Polysomes were found to contain tRNA^Trp, consistent with its role in …

Knowledge And Practice Of Healthy Lifestyle And Dietary Habits In Medical And Non-Medical Students Of Karachi, Pakistan, Rubina A. Sajwani, Sana Shoukat, Rushna Raza, Muhammad Muhyeuddin Shiekh, Quratulain Rashid, Momin Saulat Siddique, Sukaina Panju, Hasan Raza, Sophia Chaudhry, Muhammad Masood Kadir

Community Health Sciences

OBJECTIVE: To objectively compare the differences in knowledge and practices regarding healthy lifestyle among medical and non-medical students of Karachi along with assessment of any perceived barriers.METHODS: This cross-sectional study included 350 students between ages 17-24 years from 6 private universities of Karachi--three medical and three non-medical Institutions. A self-reported questionnaire was employed to assess attitude and barriers to healthy practices among the simple random selection of students.RESULTS: On a 10-point scale, the average knowledge score of students on general and clinical nutritional knowledge was 5.7 +/- 1.51 and 4.4 +/- 1.77, respectively and the difference was statistically significant (p < 0.01). Conversely the diet and lifestyle score (85-point scale) among medical (41.3) and non medical students (40.8) was not significant (p = 0.646). There was no difference between the perception of medical and non-medical students regarding 'work-related stress' in their life. 'Lack of time' was cited as the most important reason for skipping meals and as a barrier to exercising regularly among both groups.CONCLUSION: The knowledge, attitudes and practices of medical students in Karachi suggest that superior knowledge about healthy lifestyle does not necessarily result into better practices.

Cdna Cloning, Expression And Fibrin(Ogen)Olytic Activity Of Two Low-Molecular Weight Snake Venom Metalloproteinases, Ying Jia, Sara E. Lucena, Esteban Cantu, Elda E. Sánchez, John C. Perez

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Two cDNA clones, AplVMP1 and AplVMP2, were isolated from a snake (Agkistrodon piscivorus leucostoma) venom gland cDNA library. The full-length cDNA sequence of AplVMP1 with a calculated molecular mass of 46.61 kDa is 1,233 bp in length. AplVMP1 encodes PI class metalloproteinase with an open reading frame of 411 amino acid residues that includes signal peptide, pro-domain and metalloproteinase domains. The full-length cDNA of the AplVMP2 (1,371bp) has a calculated molecular mass of 51.16 kDa and encodes PII class metalloproteinase. The open reading frame of AplVMP2 with a 457 amino acid residues is composed of signal peptide, pro-domain, …

Fatty Acid Oxidation And Meiotic Resumption In Mouse Oocytes, Stephen M. Downs, Jessica Odette, John Klinger

Biological Sciences Faculty Research and Publications

We have examined the potential role of fatty acid oxidation (FAO) in AMP-activated protein kinase (AMPK)-induced meiotic maturation. Etomoxir and malonyl CoA, two inhibitors of carnitine palmitoyl transferase-1 (CPT1), and thus FAO, blocked meiotic induction in dbcAMP-arrested cumulus cell-enclosed oocytes (CEO) and denuded oocytes (DO) by the AMPK activator, AICAR. C75, an activator of CPT1 and FAO, stimulated meiotic resumption in CEO and DO. This effect was insensitive to the AMPK inhibitor, compound C, indicating an action downstream of AMPK. Palmitic acid or carnitine also promoted meiotic resumption in DO in the presence of AICAR. Since C75 also suppresses the …

The Tall Fescue Turf Grass Class I Chitinase Gene Fachit1 Is Activated By Fungal Elicitors, Dehydration, Ethylene, And Mechanical Wounding, Jian Wang, Na Tian, Xuan Huang, Li Yu Chen, Michael Schläppi, Zi Qin Xu

Biological Sciences Faculty Research and Publications

The cDNA, genomic DNA, and promoter sequence of FaChit1, a class I chitinase gene from Festuca arundinacea, were isolated and characterized in the present work. The deduced amino acid sequence of FaChit1 contains the chitin binding, catalytic, and proline and glycine-rich domains characteristic for most class I chitinases, but no C-terminal extension region. FaChit1 is induced effectively by fungal elicitors, dehydration, and ethylene, but only slightly by mechanical wounding. To identify potential stress-related cis-acting elements, 5′ sequences 935, 651, and 233 bp upstream of the FaChit1 start codon were fused to the GUS reporter gene and analyzed …

Sibship Reconstruction Demonstrates The Extremely Low Effective Population Size Of Striped Bass Morone Saxatilis In The Santee-Cooper System, South Carolina, Usa, Jin-Xian Liu, Bert Ely

Faculty Publications

For organisms with great fecundity and high mortality in early life stages, such as shellfish or fishes, the need to match reproductive activity with environmental conditions conducive to spawning, fertilization, larval development and recruitment may result in extreme variance in reproductive success among individuals. The main objective of this study was to investigate evidence of large variance in the reproductive success of the striped bass Morone saxatilis in the Santee-Cooper system, South Carolina, USA. Seven microsatellite loci were analysed in 603 recruits representing three yearly cohorts from 1992 to 1994, and a group analysis was performed to identify full-sib families. …

The Elucidation Of Metabolic Pathways And Their Improvements Using Stable Optimization Of Large-Scale Kinetic Models Of Cellular Systems, Evgeni V. Nikolaev

Department of Pathology, Anatomy, and Cell Biology Faculty Papers

Metabolic engineering of cellular systems to maximize reaction fluxes or metabolite concentrations still presents a significant challenge by encountering unpredictable instabilities that can be caused by simultaneous or consecutive enhancements of many reaction steps. It can therefore be important to select carefully small subsets of key enzymes for their subsequent stable modification compatible with cell physiology. To address this important problem, we introduce a general mixed integer non-linear problem (MINLP) formulation to compute automatically which enzyme levels should be modulated and which enzyme regulatory structures should be altered to achieve the given optimization goal using non-linear kinetic models of relevant …

Level 1an - Holes And Ridges Knitted Dishcloth - 103, Debra Proctor

All Current Publications

Cotton yarn is a good yarn to use for a dishcloth. It is absorbent, stronger wet than dry, machine washable and can be bleached if needed. These dishcloths are easy and fun to make. Make several and give them as gifts.

Level 1b - Fleece Tied Pillow - 204, Ronda Olsen, Debra Proctor, Karen Biers

All Current Publications

As you prepare to make your Fleece Tied Pillow, you will need to decide whether you want to make a 14, 16, or 18" pillow.

Minimizing Disease In Your Sheep Flock, A Guide To Preventive Flock Health, Kerry A. Rood, C Kim Chapman

All Current Publications

This publication serves as a guide to preventative sheep flock health that explains risks, nutrition, vaccinations, etc.

Cook Surface Precautions For Home Canning, Brian Nummer

All Current Publications

This publication discusses the advantages and disadvantages to different surface options for home-canning.

Food Storage Exposed To Floodwater, Fire And Chemicals, Christine E. Jensen

All Current Publications

This publication gives tips and instructions on how to deal with food storage that has been exposed to floodwater, fire, and chemicals.

Clinical Decision Support Capabilities Of Commercially-Available Clinical Information Systems, Justine E Pang, Blackford Middleton

Faculty, Staff and Student Publications

BACKGROUND: The most effective decision support systems are integrated with clinical information systems, such as inpatient and outpatient electronic health records (EHRs) and computerized provider order entry (CPOE) systems. Purpose The goal of this project was to describe and quantify the results of a study of decision support capabilities in Certification Commission for Health Information Technology (CCHIT) certified electronic health record systems.

METHODS: The authors conducted a series of interviews with representatives of nine commercially available clinical information systems, evaluating their capabilities against 42 different clinical decision support features.

RESULTS: Six of the nine reviewed systems offered all the applicable …

Smokejumper Obituary: Frost, William W. (Pilot 0000), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Preface To Special Issue

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.

The Crystal Structure Of The Escherichia Coli Autoinducer-2 Processing Protein Lsrf, Zamia Caridad Diaz , '09, K. B. Xavier, Stephen T. Miller

Chemistry & Biochemistry Faculty Works

Many bacteria produce and respond to the quorum sensing signal autoinducer-2 (AI-2). Escherichia coli and Salmonella typhimurium are among the species with the lsr operon, an operon containing AI-2 transport and processing genes that are up regulated in response to AI-2. One of the Lsr proteins, LsrF, has been implicated in processing the phosphorylated form of AI-2. Here, we present the structure of LsrF, unliganded and in complex with two phospho-AI-2 analogues, ribose-5-phosphate and ribulose-5-phosphate. The crystal structure shows that LsrF is a decamer of (alpha beta)(8)-barrels that exhibit a previously unseen N-terminal domain swap and have high structural homology …

The Genome Of Nectria Haematococca: Contribution Of Supernumerary Chromosomes To Gene Expansion, Jeffrey J. Coleman, Steve D. Rounsley, Marianela Rodriguez-Carres, Alan Kuo, Catherine C. Wasmann, Jane Grimwood, Jeremy Schmutz, Masatoki Taga, Gerard J. White, Shiguo Zhou, David C. Schwartz, Michael Freitag, Li-Jun Ma, Etienne G. J. Danchin, Bernard Henrissat, Pedro M. Coutinho, David R. Nelson, Dave Straney, Carolyn A. Napoli, Bridget M. Barker, Michael Gribskov, Martijn Rep, Scott Kroken, István Molnár, Christopher Rensing, John C. Kennell, Jorge Zamora, Mark L. Farman, Eric U. Selker, Asaf Salamov, Harris Shapiro, Jasmyn Pangilinan, Erika Lindquist, Casey Lamers, Igor V. Grigoriev, David M. Geiser, Sarah F. Covert, Esteban Temporini, Hans D. Vanetten

Plant Pathology Faculty Publications

The ascomycetous fungus Nectria haematococca, (asexual name Fusarium solani), is a member of a group of >50 species known as the "Fusarium solani species complex". Members of this complex have diverse biological properties including the ability to cause disease on >100 genera of plants and opportunistic infections in humans. The current research analyzed the most extensively studied member of this complex, N. haematococca mating population VI (MPVI). Several genes controlling the ability of individual isolates of this species to colonize specific habitats are located on supernumerary chromosomes. Optical mapping revealed that the sequenced isolate has 17 chromosomes ranging from 530 …

A Classification Model For Distinguishing Copy Number Variants From Cancer-Related Alterations, Irina Ostrovnaya, Gouri Nanjangud, Adam Olshen

Memorial Sloan-Kettering Cancer Center, Dept. of Epidemiology & Biostatistics Working Paper Series

Both somatic copy number alterations (CNAs) and germline copy number variants (CNVs) that are prevalent in healthy individuals can appear as recurrent changes in comparative genomic hybridization (CGH) analyses of tumors. In order to identify important cancer genes CNAs and CNVs must be distinguished. Although the Database of Genomic Variants (Iafrate et al., 2004) contains a list of all known CNVs, there is no standard methodology to use the database effectively.

We develop a prediction model that distinguishes CNVs from CNAs based on the information contained in the Database and several other variables, including potential CNV’s length, height, closeness to …

Identification And Manipulation Of Resistance To Tomato Spotted Wilt Virus Derived From Solanum Peruvianum, Luis F. Gordillo Jr.

Theses and Dissertations

The domesticated tomato Solanum lycopersicum (L.), formerly known as Lycopersicon esculentum is a genetically well-studied crop species with high-density linkage and molecular maps based on crosses done between cultivated tomato and its distant related wild species. Wild tomato species harbor a wealth of resistance to many pathogens that have been introgressed into domesticated tomato for genetic control of diseases and pests and for improvement of many agronomic traits. The wild tomato S. peruvianum (L.) is the source of the Sw-5 gene, characterized and mapped to chromosome 9 of the tomato genome and introgressed into elite tomato germplasm, providing resistance to …

The Role Of Porphyromonas Gingivalis Lysine Specific Protease, Kgp In Hemin Transport And Pigment Accumulation, Anuj Phull

Theses and Dissertations

Porphyromonas gingivalis, a gram-negative anaerobic bacterium, is implicated as a major etiological agent in the initiation and progression of severe forms of periodontal disease. It has been reported that gingivitis and periodontal disease affect roughly 50.3% and 35% of the adult population, respectively. Therefore, approximately over 85% of the adult population may suffer from some form of gingival disease. Porphyromonas gingivalis, an established periodontopathogen, requires hemin for growth. Although multiple hemin uptake systems appear to be present in this organism, their specific role in hemin uptake and virulence remains unknown. Pigmentation is thought to result from the accumulation of iron …

The Multipurpose 15-Protofilament Microtubules In C. Elegans Have Specific Roles In Mechanosensation, Alexander Bounoutas, Robert O'Hagan, Martin Chalfie

Department of Biology Faculty Scholarship and Creative Works

Because microtubules perform many essential functions in neurons, delineating unique roles attributable to these organelles presents a formidable challenge. Microtubules endow neurons with shape and structure and are required for developmental processes including neurite outgrowth [1], intracellular transport [2], and synapse formation and plasticity [3, 4]; microtubules in sensory neurons may be required for the above processes in addition to a specific sensory function. In Caenorhabditis elegans, six touch receptor neurons (TRNs) sense gentle touch [5] and uniquely contain 15-protofilament microtubules [6]. Disruption of these microtubules by loss of either the MEC-7 β-tubulin [7] or MEC-12 α-tubulin [8] or by …

Online Piece-Wise Linear Approximation Of Numerical Streams With Precision Guarantees, Hazem Elmeleegy, Ahmed Elmagarmid, Emmanuel Cecchet, Walid G. Aref, Willy Zwaenepoel

Cyber Center Publications

Continuous “always-on” monitoring is beneficial for a number of applications, but potentially imposes a high load in terms of communication, storage and power consumption when a large number of variables need to be monitored. We introduce two new filtering techniques, swing filters and slide filters, that represent within a prescribed precision a time-varying numerical signal by a piecewise linear function, consisting of connected line segments for swing filters and (mostly) disconnected line segments for slide filters. We demonstrate the effectiveness of swing and slide filters in terms of their compression power by applying them to a reallife data set plus …

In Vivo Analysis Of The Notch Receptor S1 Cleavage, Robert J. Lake, Lisa M. Grimm, Alexey Veraksa, Spyros Artavanis-Tsakonas

Biology Faculty Publication Series

A ligand-independent cleavage (S1) in the extracellular domain of the mammalian Notch receptor results in what is considered to be the canonical heterodimeric form of Notch on the cell surface. The in vivo consequences and significance of this cleavage on Drosophila Notch signaling remain unclear and contradictory. We determined the cleavage site in Drosophila and examined its in vivo function by a transgenic analysis of receptors that cannot be cleaved. Our results demonstrate a correlation between loss of cleavage and loss of in vivo function of the Notch receptor, supporting the notion that S1 cleavage is an in vivo mechanism …

Total Synthesis Of (-)-Acutumine, Fang Li

Theses and Dissertations

Acutumine is a tetracyclic alkaloid isolated from the Asian vine Menispermum dauricum with selective T-cell cytotoxicity and antiamnestic properties. We have developed a total synthetic route to this congested alkaloid, during which we also found a novel, stereoselective radical-crossover reaction that combines an intramolecular radical conjugate addition with a subsequent enolate hydroxylation. Key features of this synthesis also include a reagent-controlled diastereoselective ketone allylation, an anionic oxy-Cope rearrangement to form a congested quaternary sterocenter, a pyridine-mediated selective ozonolysis, and a Lewis acid promoted Michael-type cyclization.