Life Sciences Commons^™

Ga-Facilitated Knn Classifier Optimization With Varying Similarity Measures, Michael R. Peterson, Travis E. Doom, Michael L. Raymer

Kno.e.sis Publications

Genetic algorithms are powerful tools for k-nearest neighbors classifier optimization. While traditional knn classification techniques typically employ Euclidian distance to assess pattern similarity, other measures may also be utilized. Previous research demonstrates that GAs can improve predictive accuracy by searching for optimal feature weights and offsets for a cosine similarity-based knn classifier. GA-selected weights determine the classification relevance of each feature, while offsets provide alternative points of reference when assessing angular similarity. Such optimized classifiers perform competitively with other contemporary classification techniques. This paper explores the effectiveness of GA weight and offset optimization for knowledge discovery using knn classifiers with …

Identification And Characterization Of A Selective Inhibitor Of The Pim-1 Kinase, Sheldon Levon Holder

Loma Linda University Electronic Theses, Dissertations & Projects

The PIM-1 kinase is a serine/threonine kinase that has been implicated in the development of many human cancers, including leukemias, lymphomas, and prostate cancer. We have endeavored to identify and characterize a selective inhibitor of the PIM- 1 kinase. Such an inhibitor would have utility as a laboratory tool for the study of PIM-1 kinase function and as a template for the design of molecular therapeutics for diseases in which PIM-1 kinase activity is dysregulated.

Using phage display techniques we identified the peptide, HGVKKRPHNPYG, as a probable pseudosubstrate of the PIM-1 kinase with inhibitory activity in the low micromolar range …

Going For The Bottle, Winston J. Craig

Lake Union Herald

No abstract provided.

An Investigation Of The Changes Of Species Richness And Distribution Of The Unionidae (Bivalvia: Molusca) Within The Pamunkey Watershed, William Robert Lees

Master's Theses

A survey of the Unionidae within the Pamunkey Watershed was conducted to investigate changes in distribution and species richness compared to a previous survey (Riddick, 1973) conducted over 30 years ago. Species richness decreased from 10 species in the previous survey to four species in the present survey. Notable increases of species richness were found in the upper South Anna and the lower North Anna regions, while sizable decreases were found in the lower South Anna and the upper and middle regions of the Pamunkey River. Regression analyses and t-tests comparing mussel survey data with habitat parameters were conducted to …

Cpg Oligodeoxynucleotides Stimulate Cord Blood Mononuclear Cells To Produce Immunoglobulins., Cheri D Landers, Subbarao Bondada

Microbiology, Immunology, and Molecular Genetics Faculty Publications

CpG oligodeoxynucleotides (ODNs) stimulate adult B cells leading to cellular proliferation and immunoglobulin production. It is unknown if CpG-ODNs similarly stimulate neonatal human B cells. Neonates have immature immune responses and are poorly responsive to thymus independent antigens such as polysaccharides. We determined umbilical cord cells' response to CpG-ODNs. Adult and umbilical cord B cells produced similar amounts of IgM (adult 1371 +/- 352 vs. cord 1873 +/- 1084 ng/ml) in response to CpG-ODN stimulation. Although CpG-ODN was able to stimulate adult IgG and IgA production, cord cells produced less IgG (153 +/- 58 vs. 10 +/- 2.5 ng/ml) and …

The Leading Object: September 2005

Leading Object

Content:
Perspectives by John C. Owens
CASNR Leads All UNL Colleges In Fall Semester Enrollment Gain
NCTA Enrollment Up 23 Percent
UNL Helped Schroeder Become ‘Constant Learner’
Hibberd Represents IANR During Trade Mission to Cuba
UNL Extension Receives Conservation Award
Hurricane Katrina Sends Two to Gulf, Exchange Student to CASNR
Drought Mitigation Center Develops Web-based Tool
OEA Awarded to Computer Specialist
Koelsch Receives Engineering Award
IANR Innovation Grants Available

Guide To Nebraska’S Wetlands And Their Conservation Needs: Second Edition, 2005, Ted Lagrange

Nebraska Game and Parks Commission: Publications

Wetlands — a source of great interest, and at times conflict. Wetlands represent different things to different people. At times they’re viewed as shallow, muddy nuisances while at other times they’re viewed as wonderful, varied and productive assets. This is because wetlands take on many roles as part of a complex and dynamic system. Understanding wetlands and wetland issues requires understanding the complex and varying roles that wetlands can play. To aid in this understanding, this guide defines wetlands, discusses their importance and dynamics, identifies threats and losses, describes conservation programs, and takes an in-depth look at Nebraska’s regional wetland …

An Artificial Neural Network That Utilizes Hip Joint Actuations To Control Bifurcations And Chaos In A Passive Dynamic Bipedal Walking Model, Max J. Kurz, Nikolaos Stergiou

Journal Articles

Chaos is a central feature of human locomotion and has been suggested to be a window to the control mechanisms of locomotion. In this investigation, we explored how the principles of chaos can be used to control locomotion with a passive dynamic bipedal walking model that has a chaotic gait pattern. Our control scheme was based on the scientific evidence that slight perturbations to the unstable manifolds of points in a chaotic system will promote the transition to new stable behaviors embedded in the rich chaotic attractor. Here we demonstrate that hip joint actuations during the swing phase can provide …

26 | Pottery Of The Crusader, Ayyubid, And Mamluk Periods In Israel, Miriam Avissar, Edna J. Stern

IAA Reports—Monograph Series of the Israel Antiquities Authority

This volume presents the pottery from the late medieval periods of the 12th to 15th centuries (Crusader, Ayyubid, Mamluk periods) from excavations in Israel, and is basically a handbook for archaeologists that reflects the state of research up to 2004. During this time span, the borders were very dynamic, and often the only apparent differences in the pottery assemblages were in the relative frequencies of the different types: while local wares often continued regardless of political changes, imported wares reflected commercial connections that changed dramatically.

Electromechanical Delay Of The Knee Extensor Muscles Is Not Altered After Harvesting The Patellar Tendon As A Graft For Acl Reconstruction: Implications For Sports Performance, Anastasios D. Georgoulis, Stavros Ristanis, Anastasios Papadonikolakis, Elias Tsepis, U. Moebius

Journal Articles

Although the scar tissue, which heals the donor site defect, has different elasticity from the neighbouring patellar tissue, it remains unclear if this scar tissue can lead to the changes of the electromechanical delay (EMD) of the knee extensor muscles. If such changes do exist, they can possibly affect both the utilization of the stored energy in the series elastic component, as well as the optimal performance of the knee joint movement. The purpose of this study was to investigate the influence of harvesting the patellar tendon during anterior cruciate ligament (ACL) reconstruction and the associated patellar tendon scar tissue …

Anterior Cruciate Ligament Reconstruction With A Quadrupled Hamstring Autograft Does Not Restore Tibial Rotation, Anastasios D. Georgoulis, Stavros Ristanis, Vasilis Chouliaras, Constantina O. Moraiti, Nikolaos Stergiou

Journal Articles

As a result of the morbidity associated with anterior cruciate ligament (ACL) reconstruction with a bone–patellar–tendon– bone graft, many orthopaedic surgeons prefer hamstrings as the graft for ACL reconstruction. However, this selection is not based on solid scientific evidence. In vitro research shows that this graft cannot restore control of tibial rotation. Our recent in vivo research work has also demonstrated the same result. In particular, patients undergoing ACL repair who were reconstructed with a quadrupled hamstring tendon graft showed excessive tibial rotation during a dynamic activity when compared with healthy control subjects. Although the hamstring tendon graft has a …

The Let-7 Microrna Family Members Mir-48, Mir-84, And Mir-241 Function Together To Regulate Developmental Timing In Caenorhabditis Elegans, Allison L. Abbott, Ezequiel Alvarez-Saavedra, Eric A. Miska, Nelson C. Lau, David P. Bartel, H. Robert Horvitz, Victor R. Ambros

Biological Sciences Faculty Research and Publications

The microRNA let-7 is a critical regulator of developmental timing events at the larval-to-adult transition in C. elegans. Recently, microRNAs with sequence similarity to let-7 have been identified. We find that doubly mutant animals lacking the let-7 family microRNA genes mir-48 and mir-84 exhibit retarded molting behavior and retarded adult gene expression in the hypodermis. Triply mutant animals lacking mir-48, mir-84, and mir-241 exhibit repetition of L2-stage events in addition to retarded adult-stage events. mir-48, mir-84, and mir-241 function together to control the L2-to-L3 transition, likely by base pairing to complementary sites in the …

Basic Show Steer Feeding And Care, Darrell Rothlisberger

All Current Publications

The junior livestock program is a unique opportunity to use live animals to help youth develop. Youth learn something about agriculture and livestock production and develop an appreciation for the livestock industry.

Lrp Swine, Unknown Unknown

All Current Publications

This fact sheet lists details of LRP-Swine insurance for pork producers.

Determining Forage Dry Matter Concentration With A Microwave Oven, T.C. Griggs

All Current Publications

No abstract provided.

Corn Silage Performance, 2004; Cache County, Utah, T. C. Griggs, C. E. Israelsen, K. Pack, D. R. Fillmore, D. D. Knudsen

All Current Publications

No abstract provided.

Evolution Of Morphological Integration: Developmental Accommodation Of Stress-Induced Variation, Alexander V. Badyaev, Kerry R. Foresman, Rebecca L. Young

Biological Sciences Faculty Publications

Extreme environmental change during growth often results in an increase in developmental abnormalities in the morphology of an organism. The evolutionary significance of such stress-induced variation depends on the recurrence of a stressor and on the degree to which developmental errors can be accommodated by an organism's ontogeny without significant loss of function. We subjected populations of four species of soricid shrews to an extreme environment during growth and measured changes in the patterns of integration and accommodation of stress-induced developmental errors in a complex of mandibular traits. Adults that grew under an extreme environment had lower integration of morphological …

Functional Electric Stimulation Cycle Ergometry Training Effect On Lower Limb Muscles In Acute Sci Individuals, Timothy J. Demchak, Jon K. Linderman, W. Jerry Mysiw, Rebecca Jackson, Jihong Sunn, Steven T. Devor

Health and Sport Science Faculty Publications

The purpose of this study was to compare three different intervals for a between sets rest period during a common isokinetic knee extension strength-testing protocol of twenty older Brazilian men (66.30 ± 3.92 yrs). The volunteers underwent unilateral knee extension (Biodex System 3) testing to determine their individual isokinetic peak torque at 60, 90, and 120° ·s-1. The contraction speeds and the rest periods between sets (30, 60 and 90 s) were randomly performed in three different days with a minimum rest period of 48 hours. Significant differences between and within sets were analyzed using a One Way Analysis of …

Effect Of Almond-Raisin Versus Commercial Sports Beverage On Antioxidant Status Of Runners, Anh Thu V. Tran

Loma Linda University Electronic Theses, Dissertations & Projects

Background: Whole foods are readily available antioxidant source and provide beneficial macromolecules and phytochemicals, which may contribute to optimal health. However, the approach to examining whole foods rich in antioxidants to play either an equivalent or better role in defending exercise-induced oxidant stress have not yet been taken. Objective: The objective of this study was to compare the effects of 2 isocaloric preexercise beverages: an almond-raisin beverage and a commercial sports beverage in male endurance runners on selected antioxidant status markers.

Design: In a randomized crossover study, 10 male runners (ages 28+1.2 years) ran to exhaustion on a treadmill at …

Pineywoods Native Plant Center, Sept 2005, Sfa Gardens, Stephen F. Austin State University

SFA Gardens Newsletters

No abstract provided.

Effects Of Commercial Diazinon And Imidacloprid On Microbial Urease Activity In Soil And Sod, C. W. Ingram, Mark S. Coyne, David W. Williams

Plant and Soil Sciences Faculty Publications

Diazinon [O,O-diethyl O-2-isopropyl-6-methyl(pyrimidine-4-yl) phosphorothioate] and imidacloprid [1-(1-[6-chloro-3-pyridinyl]methyl)-N-nitro-2-imidazolidinimine] are applied to lawns for insect control simultaneously with nitrogenous fertilizers such as urea, but their potential effect on urease activity and nitrogen availability in turfgrass management has not been evaluated. Urease activity in enzyme assays, washed cell assays, and soil slurries was examined as a function of insecticide concentration. Intact cores from field sites were used to assess the effect of insecticide application on urease activity in creeping bentgrass (Agrostis palustris Huds.) and bluegrass (Poa pratensis L.) sod. Bacterial urease fromBacillus pasteurii and plant …

Isokinetic Knee Strength In Females With Fibromyalgia, Flora F. Shafiee

Loma Linda University Electronic Theses, Dissertations & Projects

Objectives: To compare knee flexors and extensors muscle strength, total work, and power between females with fibromyalgia (FM) and matched healthy controls.

Methods: This is the first study to measure knee muscle power and total work in females with FM. Thirty-one females with FM and thirty-one healthy females completed isokinetic testing of knee flexors and extensors of their dominant leg using a Cybex Norm Isokinetic Dynamometer. Two knee muscle groups (flexors and extensors) at two angular velocities (607sec and 1807sec) were tested for both groups. Both muscle groups were assessed continuously using five reciprocal concentric-concentric cycles, followed by five eccentric-eccentric …

Lymphoepithelioma-Like Carcinoma Of Urinary Bladder: (Lelca), Nausheen Yaqoob, Naila Kayani, Jaipal Piryani, Mohammad Nasir Sulaiman, Sheema H. Hasan

Department of Pathology and Laboratory Medicine

Lymphoepithelioma-like carcinoma of the bladder (LELCA) is an uncommon neoplasm of the urinary bladder and up till now only 49 cases have been reported in the English literature. It is imperative to distinguish between lymphoepithelioma-like carcinoma and malignant lymphoma as primary bladder lymphoma is extremely rare. We report a case of a 55 year old lady who presented with the complaint of burning micturition and gross hematuria for the past 5 months. There were no other known comorbids. Pelvic ultrasound was normal. Cystoscopy showed a 4x4 cm sessile mass in the bladder. Histopathological examination was consistent with the diagnosis of …

Validation Of A Serotonin Depletion Checklist In Parkinson’S Disease, Kelly Diane Darby Holder

Loma Linda University Electronic Theses, Dissertations & Projects

The distinctive pathological marker of Parkinson’s Disease (PD) is the progressive death of neurons that produce dopamine; however, there are also major alterations in the production of quantities of other neurotransmitters, such as norepinephrine and serotonin that contribute to the signs, symptoms, neuropsychological manifestations of the diseases. PD patients can be divided into classes based on the manifestation of motor symptoms, type A, classified as tremor dominant, and type B PD, classified as akinetic. Type B PD patients, often manifest symptoms in which serotonin deficiency plays an important role, such as frontal cognitive impairments, which often includes a history of …

Investigating Hydrologic Alteration As A Mechanism Of Fish Assemblage Shifts In Urbanizing Streams, Allison H. Roy, Mary C. Freeman, Byron J. Freeman, Seth J. Wenger, William E. Ensign, Judith L. Meyer

Faculty Articles

Stream biota in urban and suburban settings are thought to be impaired by altered hydrology; however, it is unknown what aspects of the hydrograph alter fish assemblage structure and which fishes are most vulnerable to hydrologic alterations in small streams. We quantified hydrologic variables and fish assemblages in 30 small streams and their subcatchments (area 8-20 km 2) in the Etowah River Catchment (Georgia, USA). We stratified streams and their subcatchments into 3 landcover categories based on imperviousness (20% of subcatchment), and then estimated the degree of hydrologic alteration based on synoptic measurements of baseflow yield. We derived hydrologic variables …

Termite (Isoptera) Diversity In Senegal And Their Damage On Reforestation Areas And Cultures, Makhfousse Sarr, Nguya K. Maniania, A. Russell-Smith, Abdoulaye Niassy

All Peer-Reviewed Publications

Studies conducted from 1969 to 2000 on termite ecology and biology in Senegal revealed high termite diversity and an influence of climate and soil conditions on termite group distribution. Sixty-four termite species were recorded. Some were specific to ecologically similar zones while others were widely distributed. Some species, known to inhabit wet zones, were found in semi-arid zones where relic forest vegetation still exists. Nioro, in the central part of the country, seems to be the buffer zone between species to the north and south of Senegal. In Ferlo, an arid zone, Macrotermes species was in regression and the subsisting …

The Effect Of Host Larvae On Three Psyttalia Species (Hymenoptera: Braconidae), Parasitoids Of Fruit-Infesting Flies (Diptera: Tephritidae), M. K. Billah, S. Kimani-Njogu, W. A. Overholt, R. A. Wharton, D. D. Wilson, M. A. Cobblah

All Peer-Reviewed Publications

Three species of fruit fly parasitoids, Psyttalia concolor (Szépligeti), Psyttalia cosyrae (Wilkinson) and Psyttalia lounsburyi (Silvestri) (Hymenoptera: Braconidae) were reared on different host larvae to determine the effects of host species, size and colour on parasitoid development. Ovipositor, ovipositor sheath and hind tibia lengths were found to be different for progenies from preferred and non-preferred host larvae. Ratios of ovipositor-tibia and ovipositor sheath-tibia showed no difference when P. concolor was reared on a bigger host (Ceratitis cosyra (Walker) (Diptera: Tephritidae), whereas rearing P. cosyrae on a smaller host (C. capitata (Wiedemann) showed significant differences. Comparison of the linear measurements, ratios …

Repellency Of Essential Oils Of Some Plants From The Kenyan Coast Against Anopheles Gambiae, Josiah O. Odalo, Maurice O. Omolo, Hamisi Malebo, John Angira, Patrick M. Njeru, Isaiah O. Ndiege, Ahmed Hassanali

All Peer-Reviewed Publications

Volatile oils extracted by hydrodistillation from six plant species growing in the Kenyan coast, Croton pseudopulchellus Pax, Mkilua fragrans Verdc. (Annonaceae), Endostemon tereticaulis (poir.) Ashby, Ocimum forskolei Benth., Ocimum fischeri Guerke and Plectranthus longipes Baker (Labiateae), were evaluated for repellency on forearms of human volunteers against Anopheles gambiae sensu stricto. All oils were found to be more repellent (RC50 range = 0.67-9.21 × 10-5 mg cm-2) than DEET (RC50 = 33 × 10-5 mg cm-2). The individual components of the oils were identified by GC-MS and GC co-injections with authentic standards. The repellency of 15 of the main constituents of …

Complete Deletion Of Wheat Streak Mosaic Virus Hc-Pro: A Null Mutant Is Viable For Systemic Infection, Drake C. Stenger, Roy C. French, Frederick E. Gildow

Department of Plant Pathology: Faculty Publications

A Wheat streak mosaic virus (WSMV) genome lacking HC-Pro was constructed and confirmed by reverse transcription-PCR to systemically infect wheat, oat, and corn. Coupled in vitro transcription/translation reactions indicated that WSMV P1 proteinase cleaved the polyprotein at the P1/P3 junction of the HC-Pro null mutant. The WSMV HC-Pro null mutant was competent for virion formation, but the virus titer was reduced 4.5-fold relative to that of the wild type. Collectively, these results indicate that WSMV HC-Pro is dispensable for replication and movement, two essential processes that are disrupted by point and small-insertion mutations introduced into potyvirus HC-Pro.

Extraneural Prion Neuroinvasion Without Lymphoreticular System Infection, Jason C. Bartz, Crista Dejoia, Tammy Tucker, Anthony E. Kincaid, Richard A. Bessen

Nebraska Center for Virology: Faculty Publications

While prion infection of the lymphoreticular system (LRS) is necessary for neuroinvasion in many prion diseases, in bovine spongiform encephalopathy and atypical cases of sheep scrapie there is evidence to challenge that LRS infection is required for neuroinvasion. Here we investigated the role of prion infection of LRS tissues in neuroinvasion following extraneural inoculation with the HY and DY strains of the transmissible mink encephalopathy (TME) agent. DY TME agent infectivity was not detected in spleen or lymph nodes following intraperitoneal inoculation and clinical disease was not observed following inoculation into the peritoneum or lymph nodes, or after oral ingestion. …