Life Sciences Commons^™

27 | Shoham (North): Late Chalcolithic Burial Caves In The Lod Valley, Israel, Edwin C.M. Van Den Brink, Ram Gophna

IAA Reports—Monograph Series of the Israel Antiquities Authority

The IAA salvage excavations at Shoham in the Lod Valley revealed four interconnected karstic caves that were used for burial as well as domestic purposes during the Chalcolithic period and the Early Bronze Age I and Intermediate Bronze Age. They are part of an entire system of cemeteries located within the karstic caves in the limestone foothills of the region. The finds include rich assemblages of burial goods, particularly the ceramic ossuaries of the Chalcolithic period. The finds enable a better understanding of Chalcolithic mortuary behavior in the region, and the relationship between the settlements and the cemeteries––the living and …

The Mineral Status And Health Of Sheep Grazing On Neutralised Used Acid Amended Pasture, Gerard Smith

Animal production and livestock published reports

No abstract provided.

Different Catalytic Mechanisms In Mammalian Selenocysteine- And Cysteine-Containing Methionine-R-Sulfoxide Reductases, Hwa-Young Kim, Vadim Gladyshev

Vadim Gladyshev Publications

Selenocysteine (Sec) is found in active sites of several oxidoreductases in which this residue is essential for catalytic activity. However, many selenoproteins have fully functional orthologs, wherein cysteine (Cys) occupies the position of Sec. The reason why some enzymes evolve into selenoproteins if the Cys versions may be sufficient is not understood. Among three mammalian methionine-R-sulfoxide reductases (MsrBs), MsrB1 is a Sec-containing protein, whereas MsrB2 and MsrB3 contain Cys in the active site, making these enzymes an excellent system for addressing the question of why Sec is used in biological systems. In this study, we found that residues, which are …

Paper Substrates For Electronic Printing, Laura K. Wood

Masters Theses

Printed Radio Frequency Identification (RFID) labels utilize conductive inks to provide the means for wireless flow of electronic signals. An RFID label is an identification label with an integrated circuit and antenna that transmits data via radio waves to a reader, which sends the data to a computer for processing. RFID labels allow manufacturers and retailers to accurately track their inventory more efficiently than previously possible with bar codes. However, etched metal RFID labels are too expensive for widespread implementation. The key to reducing the cost of RFID technology is replacing etched metal tags with tags printed with conducting ink. …

Validity Of Frozen Section In The Diagnosis Of Breast Lumps: 5 Years Experience At The Aga Khan University Hospital., Naila Kayani, Nuzhat Sultana

Department of Pathology and Laboratory Medicine

Abstract

Objective: To determine the accuracy of frozen section in the diagnosis of breast lump. Methods: Frozen section diagnosis given in consecutive breast biopsies performed in 5 years in our laboratory was evaluated against the final pathology report of permanent sections. Results: The Aga Khan University Hospital Lab receives more than 400 cases per year for frozen section. Three hundred and nineteen consecutive frozen sections of breast lumps examined from 1999-2003 were considered for analysis. Age of patients ranged between 22 and 90 years (mean age 49 years). In 316 cases (99%) there was no difference between the frozen section …

Effects Of Common Forage Phenolic Acids On Escherichia Coli O157:H7 Viability In Bovine Feces, J. E. Wells, E. D. Berry, V.H. Varel

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Ruminant animals are carriers of Escherichia coli O157:H7, and the transmission of E. coli O157:H7 from cattle to the environment and to humans is a concern. It is unclear if diet can influence the survivability of E. coliO157:H7 in the gastrointestinal system or in feces in the environment. Feces from cattle fed bromegrass hay or corn silage diets were inoculated with E. coliO157:H7, and the survival of this pathogen was analyzed. When animals consumed bromegrass hay for <1 month, viable E. coliO157:H7 was not recovered after 28 days postinoculation, but when animals consumed the diet for >1 month, E. coli …

Emerging Research Techniques & New Instrumentation For Plant Biology, Bruce Bugbee

Techniques and Instruments

We have not achieved an efficient food production system in US Agriculture by manipulating only the environment.

Genetic engineering techniques now allow us to quickly develop new crop cultivars.

Agro-Pastoralists’ Wrath For The Prosopis Tree: The Case Of The Il Chamus Of Baringo District, Kenya, D. Layne Coppock, Abdillahi A. Aboud, Phillip K. Kisoyan

Environment and Society Faculty Publications

Indigenous to Peru, Chile, and Argentina, the woody plant called Prosopis juliflora (also known by the American common name of “Honey Mesquite”) has spread world-wide in recent decades, including rangelands throughout Latin America, North America, south and central Asia, Australia, and sub-Saharan Africa. A species known for rapid establishment, high adaptability, and fast rates of growth, its dispersal has primarily been a consequence of intentional introduction by well- meaning “technical experts” who wanted to provide a new source of fodder, fuel wood, or a means to combat desertification in arid and semi-arid lands. One problem, however, is that unless Prosopis …

Linking Pastoralists And Exporters In A Livestock Marketing Chain: Recent Experiences From Ethiopia, D. Layne Coppock, Solomon Desta, Getachew Gebru, Seyoum Tezera

Environment and Society Faculty Publications

The Boran of southern Ethiopia have been traditionally viewed as unwilling or unable to engage in large scale, commercialized livestock trade. Here we report on the creation of a new livestock marketing chain from the Borana Plateau to export outlets largely serving the Gulf States. Since 2003 various meetings and exchange tours were organized by collaborating agencies and PARIMA to directly link pastoral producers with livestock exporters and policy makers. This occurred against a backdrop of growing export demand for small ruminants, rapid development of private export industry, formation of well-trained pastoral marketing groups (often dominated by women), and provision …

Degree Of Sedentarization Affects Risks And Conflicts For The Waso Boran In Northern Kenya, D. Layne Coppock, Abdullahi D. Jillo, Mark N. Mutinda, Abdilla A. Aboud

Environment and Society Faculty Publications

The Waso Borana have lived for over a century in northern Kenya. In the last few decades, however, their ability to maintain their traditions has been severely challenged. Here we report survey results from 540 households in Isiolo District, stratified among three groups differing in terms of lifestyle: sedentary, semi-sedentary, and mobile. In some cases these groups vary with respect to important perceived risks, causes of natural-resource related conflict, and possible solutions to conflict. For example, sedentary respondents often noted concerns over land tenure problems, human diseases, and political incitement. Mobile respondents, in contrast, often noted primary concerns over drought, …

Intramuscular Tenderness Variation Within Four Muscles Of The Beef Chuck, G.A. Searls, R.J. Maddock, D.M. Wulf

Animal Science Faculty Publications

The i.m. tenderness variation was examined within four beef chuck muscles, the infraspinatus (IF), supraspinatus (SS), triceps brachii (TB), and serratus ventralis (SV). The IF, SS, TB, and SV muscles were cut into 2.5 cm thick steaks perpendicular to the long axis of the muscle. An identification tag was placed on each steak, consisting of a muscle identification number, steak number, and orientation of the steak. Steaks were vacuum-packaged and stored at −22°C until subsequent analysis. Steaks were thawed at 1°C and cooked on electric broilers to an internal temperature of 71°C. One core was removed from each 2.5-cm × …

Comparing Immune Responses Of Juvenile And Adult Northern Fence Lizards, Sceloporus Undulatus, Zaïna Sandrine Kabange

All-Inclusive List of Electronic Theses and Dissertations

Sex steroid hormones affect behavior and morphological traits important in sexual selection. Steroid hormones also play a role in the development and functioning of immune system components. The immunocompetence handicap hypothesis (Folstad and Karter, 1992) proposes that tradeoffs, mediated by plasma levels of testosterone, exist between the immune system and elaboration of secondary sexual traits. Endocrine-immune interactions are well documented in birds and mammals, and steroid hormones can be immunoenhancing or immunosuppressive. Relatively little work has examined the ontogeny of immune function, and the interactions between steroid hormones and the immune system in reptiles. The first experiment addressed the question …

Variations In Races Of The Honeybee Apis Mellifera (Hymenoptera: Apidae) In Kenya, S. K. Raina, D. M. Kimbu

All Peer-Reviewed Publications

The three races of the honeybee Apis mellifera Linnaeus in Kenya (A. m. scutellata, A. m. monticola and A. m. litorea) differ from each other with respect to size, cubital index and abdominal colour banding pattern. These differences were used to assess the extent of interbreeding and hybridization between the races. This was verified on the basis of selected morphometric traits. Bee samples were collected from traditional log hives in seven geographical locations throughout Kenya ranging from lowland Mombasa in the coastal region to the highland Kinangop ranges. The length and width of the right forewing, length of proboscis, right …

The Effect Of Nitrogen Fertilizer Application To Maize And Sorghum On The Bionomics Of Chilo Partellus (Lepidoptera: Crambidae) And The Performance Of Its Larval Parasitoid Cotesia Flavipes (Hymenoptera: Braconidae), N. Jiang, F. Schulthess

All Peer-Reviewed Publications

Laboratory and field trials were conducted to evaluate the effect of plant species (maize, sorghum), plant age (young, middle, old) and four different nitrogen fertilization levels (N0-N3) on the bionomics of the invasive crambid Chilo partellus and the performance of its braconid larval parasitoid Cotesia flavipes. Plant N varied significantly between N0 and N1-N3, but the differences among the latter were not significant. Intrinsic rates of increase and net-reproductive rates of C. partellus followed the same trends: they were lowest with N0 and similar among the other treatments. On maize only, mortality of C. partellus and parasitism by C. flavipes …

Fall Field Report, August–November 2005, W. Ross Silcock

Nebraska Bird Review

This fall was notable for its lack of notable events; numbers of migrants reported in all species groups, especially waterfowl, shorebirds, and warblers, were low. Lingering birds were both insectivores and seed-eaters, and, coupled with a rather stable fall weather-wise, it seems that there were no disturbances to concentrate birds or otherwise impede a steady flow of migrants through the state. Without concentrations, migrants are often not noticed or, more accurately here, not reported by observers.

The best Western Grebe count was 2500, very low relative to expected high fall counts of at least 20,000. Mergansers were the only bright …

Fall Field Days At Harlan County Reservoir

Nebraska Bird Review

The annual Fall Field Days were held on September 9–11, 2005, at the 4-H Camp near Alma. Field trip destinations included Harlan County Reservoir and various other points of interest in Furnas, Harlan, Franklin, Phelps, Kearney, and Adams Counties. The total tally was 119 species, including Snowy Egret, Yellow-crowned Night-Heron, Mississippi Kite, Prairie Falcon, and Olive-sided Flycatcher.

Fifty-four members and guests attended. On Friday the group heard from Dr. Josef Kren on the topic of obligate brood parasites, species that have lost the ability to construct nests and incubate eggs and instead lay eggs in the nests of other species, …

Nebraska Bird Review (December 2005) 73(4), Whole Issue

Nebraska Bird Review

Fall Field Report, August–November 2005 ... 134

Fall Field Days at Harlan County Reservoir ... 150

Snowy Plover Nesting at Lake McConaughy in 2004 and 2005 ... 154

Suggested Areas for Study ... 157

Index to Volume 73 ... 160

Subscription and Organization Information ... 171

Index To Volume 73

Nebraska Bird Review

Adams, Chris 32

Alexander,

George 32

Irene 32

Amiotte, Sue 97, 136

Anderson,

Kari 31

Riley 28

Anhinga 46, 51

Armknecht, Henry 4, 32, 96

Audubon Society 22

Aughey, Samuel 125

Avocet, American 46, 54, 87, 102, 140

Aids And Associated Malignancies, Charles Wood, William Harrington Jr.

Nebraska Center for Virology: Faculty Publications

AIDS associated malignancies (ARL) is a major complication associated with AIDS patients upon immunosuppression. Chronically immunocompromised patients have a markedly increased risk of developing lymphoproliferative disease. In the era of potent antiretrovirals therapy (ARV), the malignant complications due to HIV-I infection have decreased in developed nations where ARV is administered, but still poses a major problem in developing countries where HIV-l incidence is high and ARV is still not yet widely available. Even in ARV treated individuals there is a concern that the prolonged survival of many HIV-l carriers is likely to eventually result in an increased number of malignancies …

Rdr6 Has A Broad-Spectrum But Temperature-Dependent Antiviral Defense Role In Nicotiana Benthamiana, Feng Qu, Xiaohong Ye, Guichuan Hou, Shirley Sato, Thomas E. Clemente, Thomas Jack Morris

Nebraska Center for Virology: Faculty Publications

SDE1/SGS2/RDR6, a putative RNA-dependent RNA polymerase (RdRP) from Arabidopsis thaliana, has previously been found to be indispensable for maintaining the posttranscriptional silencing of transgenes, but it is seemingly redundant for antiviral defense. To elucidate the antiviral role of this RdRP in a different host plant and to evaluate whether plant growth conditions affect its role, we down-regulated expression of the Nicotiana benthamiana homolog, NbRDR6, and examined the plants for altered susceptibility to various viruses at different growth temperatures. The results we describe here clearly show that plants with reduced expression of NbRDR6 were more susceptible to all viruses tested …

A New Species Of Petasiger (Digenea: Echinostomiformes: Echinostomatidae) In The Brown Pelican, Pelecanus Occidentalis, (Aves: Pelecaniformes: Pelecanidae), From The Área De Conservación Guanacaste, Costa Rica, David Zamparo, Daniel R. Brooks, Robin M. Overstreet

Harold W. Manter Laboratory of Parasitology: Faculty Publications

A new species of Petasiger inhabits Pelecanus occidentalis, from the Área de Conservación Guanacaste, Costa Rica. The new species most closely resembles Petasiger novemdecim Lutz 1929 and Petasiger caribbensis Nassi, 1980 by having 19 circumoral spines and vitelline follicles confluent between the ventral sucker and gonads. The new species differs from both of these species by having a cirrus sac that is anteroposteriorly elongate and that reaches posteriorly to the midventral sucker, an ovary and Mehlis' gland that overlap the anterior testis dorsally, a uterus that lies dorsal to the ventral sucker, and a dextromedial genital pore. In P. …

Introduction Of Gerardo Pérez-Ponce De León, The 2005 Henry Baldwin Ward Medalist, Scott Lyell Gardner

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Includes the text for the introduction for Gerardo Pérez-Ponce De León who was the 2005 recipient of the Henry Baldwin Ward Medal through the American Society of Parsitologists. [Note: The award introduction was not given in person due to the impending arrival of Hurricane Dennis in Mobile, Alabama, where the ASP meeting was being held that year.]

Disentangling Above‐ And Below‐Ground Competition Between Lianas And Trees In A Tropical Forest, Stefan A. Schnitzer, Mirjam E. Kuzee, Frans Bongers

Biological Sciences Faculty Research and Publications

1. Light is thought to be the most limiting resource in tropical forests, and thus above‐ground competition is commonly accepted as the mechanism that structures these communities. In many tropical forests, trees compete not only with other trees, but also with lianas, which compete aggressively for below‐ground resources and thus may limit tree growth and regeneration.
2. Using a replicated experiment, we tested the relative strengths of above‐ and below‐ground competition from lianas on tree saplings in a disturbed forest in Côte d’Ivoire with a heterogeneous canopy and relatively high light penetration. We planted seedlings of three tree species and subjected them …

Climatic Unpredictability And Parasitism Of Caterpillars: Implications Of Global Warming, John Stireman, Lee Dyer, D. Janzen, M. Singer, J. Lill, R. Marquis, R. Ricklefs, G. Gentry, W. Hallwachs, P. Coley, J. Barone, H. Greeney, H. Connahs, P. Barbosa, H. Morais, I. Diniz

Biology Department Faculty Works

Insect outbreaks are expected to increase in frequency and intensity with projected changes in global climate through direct effects of climate change on insect populations and through disruption of community interactions. Although there is much concern about mean changes in global climate, the impact of climatic variability itself on species interactions has been little explored. Here, we compare caterpillar–parasitoid interactions across a broad gradient of climatic variability and find that the combined data in 15 geographically dispersed databases show a decrease in levels of parasitism as climatic variability increases. The dominant contribution to this pattern by relatively specialized parasitoid wasps …

Developmental Sequences For Simulating Crop Phenology For Water-Limiting Conditions, Gregory S. Mcmaster, Wally Wilhelm, A. B. Frank

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The timing, duration, and pace of developmental events, or phenology, are among the many responses of plants to limited soil water. Understanding and predicting plant responses to availability of soil water are important in improving the efficacy of management practices. However, the first steps towards gaining this understanding, summarizing the complete developmental sequence of the shoot apex and correlating the timing of these events, have rarely been reported. Also, the effect of water-limiting conditions on crop phenology and shoot apex development is variable. The objective of this paper is to present the developmental sequence of the wheat (Triticum aestivum …

Optimal Feature Selection For Nearest Centroid Classifiers, With Applications To Gene Expression Microarrays, Alan R. Dabney, John D. Storey

UW Biostatistics Working Paper Series

Nearest centroid classifiers have recently been successfully employed in high-dimensional applications. A necessary step when building a classifier for high-dimensional data is feature selection. Feature selection is typically carried out by computing univariate statistics for each feature individually, without consideration for how a subset of features performs as a whole. For subsets of a given size, we characterize the optimal choice of features, corresponding to those yielding the smallest misclassification rate. Furthermore, we propose an algorithm for estimating this optimal subset in practice. Finally, we investigate the applicability of shrinkage ideas to nearest centroid classifiers. We use gene-expression microarrays for …

A New Approach To Intensity-Dependent Normalization Of Two-Channel Microarrays, Alan R. Dabney, John D. Storey

UW Biostatistics Working Paper Series

A two-channel microarray measures the relative expression levels of thousands of genes from a pair of biological samples. In order to reliably compare gene expression levels between and within arrays, it is necessary to remove systematic errors that distort the biological signal of interest. The standard for accomplishing this is smoothing "MA-plots" to remove intensity-dependent dye bias and array-specific effects. However, MA methods require strong assumptions. We review these assumptions and derive several practical scenarios in which they fail. The "dye-swap" normalization method has been much less frequently used because it requires two arrays per pair of samples. We show …

Ontoqa: Metric-Based Ontology Quality Analysis, Samir Tartir, I. Budak Arpinar, Michael Moore, Amit P. Sheth, Boanerges Aleman-Meza

Kno.e.sis Publications

As the Semantic Web gains importance for sharing knowledge on the Internet this has lead to the development and publishing of many ontologies in different domains. When trying to reuse existing ontologies into their applications, users are faced with the problem of determining if an ontology is suitable for their needs. In this paper, we introduce OntoQA, an approach that analyzes ontology schemas and their populations (i.e. knowledgebases) and describes them through a well defined set of metrics. These metrics can highlight key characteristics of an ontology schema as well as its population and enable users to make an informed …

Assessment Of Chenopodium Quinoa Willd. Genetic Diversity In The Usda And Cip-Fao Collections Using Ssr?S And Snp?S, Shawn A. Christensen

Theses and Dissertations

Quinoa (Chenopodium quinoa Willd.) is a staple grain for the indigenous people of the Andean region of South America with excellent nutritional qualities, including protein content. The objective of this study is to report on the development of fluorescence-tagged simple sequence repeats (SSRs) and single nucleotide polymorphisms (SNPs) to (1) genetically characterize the inherent diversity of 152 accessions of C. quinoa; (2) determine to what degree the CIP-FAO collection represents the range of genetic diversity in quinoa; and (3) test four hypotheses regarding quinoa?s center of diversity, Highland and Lowland clustering patterns, origin of Lowland varieties, and the …

Process For The Preparation Of Citalopram Intermediate, Aslam A. Malik, Hasan Palandoken, Joy A. Stringer, Dershing Huang, Antonio Romero, Olivier Dapremont

Chemistry and Biochemistry

The present invention provides, inter alia, a novel process for the preparation of Citalopram, a known antidepressant.