Life Sciences Commons^™

Verbena Stricta Vent., John E. Ebinger

Specimens by Name

No abstract provided.

Involvement Of Thromboxane A2 And Tyrosine Kinase In The Synergistic Interaction Of Platelet Activating Factor And Calcium Ionophore A23187 In Human Platelet Aggregation, Huma Rasheed, Sheikh Arshad Saeed

Department of Biological & Biomedical Sciences

The present study was carried out to examine the mechanisms of the synergistic interaction of PAF and A23187 mediated platelet aggregation. We found that platelet aggregation mediated by subthreshold concentrations of PAF (5 nM) and A23187 (1 mM) was inhibited by PAF receptor blocker (WEB 2086, IC50 = 0.65 mM) and calcium channel blockers, diltiazem (IC50 = 13 mM) and verapamil (IC50 = 18 mM). Pretreatment of platelets with PAF and A23187 induced rise in intracellular calcium and this effect was also blocked by verapamil. While examining the role of the down stream signaling pathways, we found that platelet aggregation …

Quantification And Visualization Of Ld Patterns And Identification Of Haplotype Blocks, Yan Wang, Sandrine Dudoit

U.C. Berkeley Division of Biostatistics Working Paper Series

Classical measures of linkage disequilibrium (LD) between two loci, based only on the joint distribution of alleles at these loci, present noisy patterns. In this paper, we propose a new distance-based LD measure, R, which takes into account multilocus haplotypes around the two loci in order to exploit information from neighboring loci. The LD measure R yields a matrix of pairwise distances between markers, based on the correlation between the lengths of shared haplotypes among chromosomes around these markers. Data analysis demonstrates that visualization of LD patterns through the R matrix reveals more deterministic patterns, with much less noise, than …

Efficacy Of Quality Criteria To Identify Potentially Harmful Information: A Cross-Sectional Survey Of Complementary And Alternative Medicine Web Sites, Craig Johnson, Nadeem Q Mirza, Elmer V Bernstam

Faculty, Staff and Student Publications

BACKGROUND: Many users search the Internet for answers to health questions. Complementary and alternative medicine (CAM) is a particularly common search topic. Because many CAM therapies do not require a clinician's prescription, false or misleading CAM information may be more dangerous than information about traditional therapies. Many quality criteria have been suggested to filter out potentially harmful online health information. However, assessing the accuracy of CAM information is uniquely challenging since CAM is generally not supported by conventional literature. OBJECTIVE: The purpose of this study is to determine whether domain-independent technical quality criteria can identify potentially harmful online CAM content. …

Acer Ginnala Maxim., Gordon C. Tucker

Specimens by Name

No abstract provided.

New Seed Varieties, Larry A. Sagers

All Archived Publications

No abstract provided.

Growing Bulbs In Utah, Larry A. Sagers

All Archived Publications

No abstract provided.

High Polymorphism In The K-Casein (Csn3) Gene From Wild And Domestic Caprine Species Revealed By Dna Sequencing, Oliver C. Jann, Eva-Maria Prinzenberg, Gordon Luikart, Ana Caroli, Georg Erhardt

Biological Sciences Faculty Publications

We assessed polymorphisms in exon IV of the k-casein gene (CSN3) in ten different breeds of domestic goat (Capra hircus) from three continents and in three related wild caprine taxa (Capra ibex, Capra sibirica and Capra aegagrus). Thirty-five DNA samples were sequenced within a 558 bp fragment of exon IV. Nine polymorphic sites were identified in domestic goat, including four new polymorphisms. In addition to four previously described polymorphic positions, a total of 13 polymorphisms allowed the identification of 13 DNA variants, corresponding to 10 protein variants. Because of conflicting nomenclature of these variants, we propose …

Pressurized Hot Water And Dtpa-Sorbitol, Viable Alternatives For Soil Boron Extraction, Amanda Kathryn Shiffler

Theses and Dissertations

Pressurized hot water and DTPA-Sorbitol are two relatively new soil boron (B) extraction methods with potential to replace the cumbersome hot water extraction. The objective of this research is to produce data in support of acceptance or rejection of these two alternative B extractions. The three soil tests were used to extract B from samples of calcareous sand and silt loam and limed, loamy fine sand treated with 10 levels of B and incubated for 7 and 28 d. As B application increased so did extractable B with each extraction method. High correlations (r of 0.977 to 0.999) were observed …

Mechanism Governing The Cellular Susceptibility To Secretory Phospholipase A2, Lauren Blackburn Jensen

Theses and Dissertations

Secretory phospholipase A2 (sPLA2) is an important part of apoptosis and disposal of damaged and dying cells. However, healthy cells are not susceptible to attack by sPLA2. Recent studies have focused on membrane properties necessary to induce susceptibility in both artificial and biological membranes. Hydrolysis of phospholipids by sPLA2 requires at least two preliminary steps: first, adsorption of the enzyme to the cellular membrane, and second, movement of a phospholipid into the active site of the enzyme. We determined the effects of susceptibility on each of the two steps and determined the contributions changing the equilibrium constants have on susceptibility. …

Accuracy Of Msi Testing In Predicting Germline Mutations Of Msh2 And Mlh1: A Case Study In Bayesian Meta-Analysis Of Diagnostic Tests Without A Gold Standard, Sining Chen, Patrice Watson, Giovanni Parmigiani

Johns Hopkins University, Dept. of Biostatistics Working Papers

Microsatellite instability (MSI) testing is a common screening procedure used to identify families that may harbor mutations of a mismatch repair gene and therefore may be at high risk for hereditary colorectal cancer. A reliable estimate of sensitivity and specificity of MSI for detecting germline mutations of mismatch repair genes is critical in genetic counseling and colorectal cancer prevention. Several studies published results of both MSI and mutation analysis on the same subjects. In this article we perform a meta-analysis of these studies and obtain estimates that can be directly used in counseling and screening. In particular we estimate the …

Shirley Watkins Bowden, Shirley Watkins Bowden, Institute Of Child Nutrition. Child Nutrition Archives.

Oral History Project (all interviews)

Shirley Watkins served as Under Secretary for Food, Nutrition, and Consumer Services at the U.S. Department of Agriculture from 1997 – 2001, the first African-American woman to hold that position. Prior to that she was Director of Child Nutrition Programs for Memphis City Schools for seventeen years. She served as president of ASFSA from 1988 – 1989. She now works with Southern Educational Services, a consulting business concerned primarily with environment friendly school food service cafeteria operations.

Shirley Watkins Bowden sat for an update to her oral history interview with Jeffrey Boyce on May 22, 2014, at the National Food …

Lysimachia Terrestris (L.) Britton, Sterns & Poggenb., Kerry Barringer

Specimens by Name

No abstract provided.

Food Relocation Behavior And Synopsis Of The Southern South American Genus Glyphoderus Westwood (Scarabaeidae: Scarabaeinae: Eucraniini), Federico C. Ocampo

University of Nebraska State Museum: Entomology Papers

The Argentinean endemic Eucraniini genus Glyphoderus Westwood is redescribed, a key to species and a synopsis of the three known species, . centralis Burmeister, G. monticola Burmeister, and G. sterquilinus (Westwood) is presented. The biology and food relocation behavior of the three species are described. A key to genera of the tribe Eucranini is also presented.

Exceptional Record Of Mid-Pleistocene Vertebrates Helps Differentiate Climatic From Anthropogenic Ecosystem Perturbations, Anthony D. Barnosky, Christopher J. Bell, Steven D, Emslie, H. Thomas Goodwin, Jim I. Mead, Charles A. Repenning, Eric Scott, Alan B. Shabel

Faculty Publications

Mid-Pleistocene vertebrates in North America are scarce but important for recognizing the ecological effects of climatic change in the absence of humans. We report on a uniquely rich mid-Pleistocene vertebrate sequence from Porcupine Cave, Colorado, which records at least 127 species and the earliest appearances of 30 mammals and birds. By analyzing >20,000 mammal fossils in relation to modern species and independent climatic proxies, we determined how mammal communities reacted to presumed glacial-interglacial transitions between 1,000,000 and 600,000 years ago. We conclude that climatic warming primarily affected mammals of lower trophic and size categories, in contrast to documented human impacts …

Smokejumper Obituary: Brennan, Robert J. (Missoula 1941), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Identification And Functional Analysis Of The Essential And Regulatory Light Chains Of The Only Type Ii Myosin Myo1p In Saccharomyces Cerevisiae, J. Luo, Elizabeth Ann Vallen, C. Dravis, S. E. Tcheperegine, B. Drees, E. Bi

Biology Faculty Works

Cytokinesis in Saccharomyces cerevisiae involves coordination between actomyosin ring contraction and septum formation and/or targeted membrane deposition. We show that Mlc1p, a light chain for Myo2p (type V myosin) and lqg1p (IQGAP), is the essential light chain for Myo1p, the only type 11 myosin in S. cerevisiae. However, disruption or reduction of Mlc1p-Myo1p interaction by deleting the Mlc1p binding site on Myo1p or by a point mutation in MLC1, mlc1-93, did not cause any obvious defect in cytokinesis. In contrast, a different point mutation, mlc1-11, displayed defects in cytokinesis and in interactions with Myo2p and lqg1p. These data suggest that …

Melanoma Chondroitin Sulfate Proteoglycan Enhances Fak And Erk Activation By Distinct Mechanisms, Jianbo Yang, Matthew A. Price, Cheryl L. Neudauer, Christopher Wilson, Soldano Ferrone, Hong Xia, Joji Iida, Melanie A. Simpson, James B. Mccarthy

Department of Biochemistry: Faculty Publications

Melanoma chondroitin sulfate proteoglycan (MCSP) is an early cell surface melanoma progression marker implicated in stimulating tumor cell proliferation, migration, and invasion. Focal adhesion kinase (FAK) plays a pivotal role in integrating growth factor and adhesion-related signaling pathways, facilitating cell spreading and migration. Extracellular signal–regulated kinase (ERK) 1 and 2, implicated in tumor growth and survival, has also been linked to clinical melanoma progression. We have cloned the MCSP core protein and expressed it in the MCSP-negative melanoma cell line WM1552C. Expression of MCSP enhances integrin-mediated cell spreading, FAK phosphorylation, and activation of ERK1/2. MCSP transfectants exhibit extensive MCSP-rich microspikes …

Differential Expression With The Bioconductor Project, Anja Von Heydebreck, Wolfgang Huber, Robert Gentleman

Bioconductor Project Working Papers

A basic, yet challenging task in the analysis of microarray gene expression data is the identification of changes in gene expression that are associated with particular biological conditions. We discuss different approaches to this task and illustrate how they can be applied using software from the Bioconductor Project. A central problem is the high dimensionality of gene expression space, which prohibits a comprehensive statistical analysis without focusing on particular aspects of the joint distribution of the genes expression levels. Possible strategies are to do univariate gene-by-gene analysis, and to perform data-driven nonspecific filtering of genes before the actual statistical analysis. …

Meeting Minutes, June 18th, 2004, National Smokejumper Association Board Of Directors

National Smokejumper Association Meeting Minutes

Agenda: The Pledge of Allegiance.; Special Studies.; Smokejumper Data Base.; Nomination of Additional Board Members and Positions.; Minutes of Prior Meeting.; Treasurer's Report.; Investment Strategy.; Merchandising.; Membership.; Folk Life Festival.; Smokejumper Reunion 2004 Status Report.; Recognition of Effort.; Contributing Membership.; Cold Missouri Waters.; University of Montana Archives Memorandum of Understanding.; Evergreen Museum Display Dedication.; CPS-103 Reunion.; Strategic Plan.; Membership at Jump Bases.; Passing the Gavel.; meeting be adjourned.; Attachment 1 Membership Recruitment Campaign.; Attachment 2 Memorandum of Understanding.; Attachment 3 Resolutions.;

A Physiochemically Constrained Seawater Culturing System For Production Of Benthic Foraminifera, Christopher J. Hintz, G. Thomas Chandler, Jay M. Bernhardt, Daniel C. Mccorkle, Suzanne M. Havach, Jessica K. Blanks, Timothy J. Shaw

Faculty Publications

No abstract provided.

Natural Selection Drives Altitudinal Divergence At The Albumin Locus In Deer Mice, Peromyscus Maniculatus, Jay F. Storz, Jean M. Dubach

Jay F. Storz Publications

In populations that are distributed across steep environmental gradients, the potential for local adaptation is largely determined by the spatial scale of fitness variation relative to dispersal distance. Since altitudinal gradients are generally characterized by dramatic ecological transitions over relatively short linear distances, adaptive divergence across such gradients will typically require especially strong selection to counterbalance the homogenizing effect of gene flow. Here we report the results of a study that was designed to test for evidence of adaptive divergence across an altitudinal gradient in a natural population of deer mice, Peromyscus maniculatus. We conducted a multilocus survey of …

Morus Rubra L., Kerry Barringer

Specimens by Name

No abstract provided.

Lysimachia Quadrifolia L., Kerry Barringer

Specimens by Name

No abstract provided.

Nonparametric Methods For Analyzing Replication Origins In Genomewide Data, Debashis Ghosh

The University of Michigan Department of Biostatistics Working Paper Series

Due to the advent of high-throughput genomic technology, it has become possible to globally monitor cellular activities on a genomewide basis. With these new methods, scientists can begin to address important biological questions. One such question involves the identification of replication origins, which are regions in chromosomes where DNA replication is initiated. In addition, one hypothesis regarding replication origins is that their locations are non-random throughout the genome. In this article, we develop methods for identification of and cluster inference regarding replication origins involving genomewide expression data. We compare several nonparametric regression methods for the identification of replication origin locations. …

Genetic Control Of Branching In Foxtail Millet, Andrew Doust, Katrien Devos, Michael Gadberry, Mike Gale, Elizabeth Kellogg

Biology Department Faculty Works

Reduction in vegetative branching is commonplace when crops are domesticated from their wild progenitors. We have identified genetic loci responsible for these changes in foxtail millet (Setaria italica), a crop closely related to maize but whose genetics are little known. Quantitative trait locus (QTL) analysis and comparative genomics reveal that basal branching (tillering) and axillary branching are partially controlled by separate loci, and that the orthologue of teosinte branched1, the major gene controlling branching phenotype in maize, has only a minor and variable effect. We identify other candidate genes for control of branching, including a number of hormone biosynthesis pathway …

Kinetic Isotope Effects In Ras-Catalyzed Gtp Hydrolysis: Evidence For A Loose Transition State, Xinlin Du, Gavin E. Black, Paolo Lecchi, Fred P. Abramson, Stephen R. Sprang

Biological Sciences Faculty Publications

A remote labeling method has been developed to determine (18)O kinetic isotope effects (KIEs) in Ras-catalyzed GTP hydrolysis. Substrate mixtures consist of (13)C-depleted GTP and [(18)O,(13)C]GTP that contains (18)O at phosphoryl positions of mechanistic interest and (13)C at all carbon positions of the guanosine moiety. Isotope ratios of the nonvolatile substrates and products are measured by using a chemical reaction interface/isotope ratio mass spectrometer. The isotope effects are 1.0012 (0.0026) in the gamma nonbridge oxygens, 1.0194 (0.0025) in the leaving group oxygens (the beta-gamma oxygen and the two beta nonbridge oxygens), and 1.0105 (0.0016) in the two beta nonbridge oxygens. …

Compositions And Methods For Enhancing Fiber Digestion, Juan Tricárico, Karl A. Dawson

Animal and Food Sciences Faculty Patents

Methods and enzyme supplements for enhancing fiber digestion in mammals and birds are described. The supplement comprises an effective amount of acetyl esterase, formulated for feeding to animals consuming significant percentages of forages in the diet. The compositions of this invention improve dry matter and neutral detergent fiber disappearance rates, and are useful dietary supplements for improving fiber digestion. The compositions of this invention may be utilized alone or in combination with known exogenous fibrolytic enzyme supplement to improve fiber digestion in mammals and birds. The acetyl esterase advantageously used in the compositions and methods of the present invention is …

Oliver Ranch Core Group Meeting: June 15, 2004, Red Rock Desert Learning Center

Reports (RRLC)

1. Approval of Minutes from May 18 Meeting
2. UNLV/CESU Update – Peg Rees/Nancy Flagg
   A. ORSS History and Talking Points
   B. Presentations to Civic Groups
3. Line and Space Update – Les Wallach/Henry Tom
4. RRCNRA Capital Improvements Update – Mark Morse
5. ORSS Project Timeline – Michael Reiland
6. Linkages Between ORSS Curriculum and Building Design – Paul Buck
7. Video Interviews of CCSD 5th Graders – CCSD Staff
8. ORSS Sub-Committee Reports
   -- Status of Committee Mission Statements
   -- Committee Responses to L&S Draft
   -- Proposal to Establish a Building Committee
   A. Operations – Jack Ramsey
   B. Wild Horse & Burro – Billie Young
   C. …

Wheat Cultivar-Specific Selection Of 2,4-Diacetylphloroglucinol-Producing Fluorescent Pseudomonas Species From Resident Soil Populations, M. Mazzola, Deanna L. Funnell, J.M. Raaijmakers

Department of Plant Pathology: Faculty Publications

An emerging body of evidence indicates a role for plant genotype as a determinant of the species and genetic composition of the saprophytic microbial community resident to the rhizosphere. In this study, experiments were conducted to determine the capacity of five different wheat cultivars to enhance resident populations and support introduced strains of 2,4-diacetylphloroglucinol (2,4-DAPG)-producing fluorescent pseudomonads, a group of bacteria known to provide biological control of several soilborne diseases. When soils were cropped with three successive 28-day growth cycles of wheat, the 2,4- DAPG-producing strains were consistently recovered from the rhizosphere of the cultivar Lewjain, and commonly were present …