Life Sciences Commons^™

Understanding The Mechanisms Of Bio-Effects Of Carbon-Based Nanomaterials In Planta Using “Omics” Approach, Sajedeh Rezaei Cherati

Theses and Dissertations

Carbon-based nanomaterials (CBNs) are recognized as versatile and promising nanomaterials for various applications across multiple fields, including medicine, genetic engineering, plant biology, and agriculture. Notably, carbon nanotubes have been identified as effective in regulating plant growth, reducing plant diseases, and facilitating the targeted delivery of molecules such as DNA and proteins into plant cells and tissues. Despite these advancements, the comprehensive understanding of CBNs' biological impacts, particularly their role in enhancing plant growth and stress tolerance, remains incomplete. Moreover, the use of CBNs in agriculture raises concerns regarding the safety of consuming contaminated plant products and the implications of CBNs …

Laying Framework For A Novel In Vitro Eukaryotic System To Measure Rate Of Transcription Elongation, John Lucas Ramirez

Theses and Dissertations

Within each cell, genetic material is stored in the form of DNA. This DNA is compacted around proteins to form higher order structures called chromatin. The basic unit of chromatin is a histone protein octamer bound with DNA called a nucleosome. A nucleosome consists of eight core proteins, four pairs of histone proteins H2A, H2B, H3, and H4, wrapped by DNA. The DNA wraps around the histone protein roughly 1.7 times, helping facilitate the compaction of DNA within the nucleus of the cell. The location of nucleosomes makes genetic material that encodes various elements, such as promoters or enhancers, accessible …

Connecting Hiv-1 Viral Protein R Polymorphisms To Changes In Inflammatory Signals And Efficacy Testing Of Essential Oils As Disinfectants Against Sars-Cov-2, J. Brandon Lopez

Theses and Dissertations

Human Immunodeficiency Virus (HIV-1) is the causative agent for acquired immunodeficiency syndrome (AIDS). Different strains of HIV-1 have been linked to a long term non-progressor (LTNP) or rapid progressor (RP) form of disease depending on rate of AIDS progression. Viral protein R (Vpr) is a viral protein that has been linked to varying rates of AIDS progression depending on the sequence. In this work, the effects of two polymorphisms, a LTNP and a RP, on different cells are studied. The LTNP virus was linked to lower release of pro-inflammatory cytokines, such as TNF and IL-6, and an increase in apoptotic …

Potential Contributions Of Xenobiotics To P-Glycoprotein Clearance Of Amyloid Β-Peptide From The Brain, Joseph Jr Asante

Theses and Dissertations

Alzheimer’s disease (AD) is an example of a neurodegenerative disease, mostly age related and characterized by cognitive decline. Currently there is no effective treatment that can prevent or slow progression of the disease. Roughly 95% of cases are sporadic, with unknown etiology. A distinguishing characteristic of the Alzheimer’s brain is the presence of amyloid plaques, with their constituent amyloid-β (Aβ) peptides implicated in causing synaptic dysfunction, memory impairment, and neurotoxicity. Although extensive research has explored the role of Aβ peptides in AD, understanding their metabolism in health versus disease remains insufficient. P-glycoprotein (P-gp), a member of the ATP-binding cassette transporter …

The Effects Of People, Time Of Day, And Season On Affiliative And Stereotypic Behaviors In Captive Rhinoptera Bonasus And Other Rays Across Two Human-Interactive Enclosures, Wren C. A. Newman

Theses and Dissertations

Cownose rays (Rhinoptera bonasus) are among the most common species found in aquaria, yet the impact of touch enclosures on their welfare remains largely unknown. While research on animal-visitor interactions has produced mixed results for other species, the lack of studies focusing on fish welfare poses a risk of overlooking potential welfare concerns. Therefore, we aimed to establish a baseline for cownose rays regarding stereotypic behaviors, sociality, and activity in captivity, and to examine the influence of human interaction on these behaviors. We collected over 700 hours of footage from two enclosures at Adventure Aquarium in Camden, NJ …

Sex Differences In The Diets Of Forest-Dwelling Baboons (Papio Anubis), Kara Hartunian

Theses and Dissertations

The ability to eat and switch between many food sources is an adaptative feeding strategy utilized for meeting nutritional needs across different environments, seasons, and physiological conditions. Baboons (genus Papio) excel at both dietary flexibility and foraging selectively, and consequently have one of the most widespread geographic distributions in the Order. To further expand to our understanding of baboon feeding ecology, I analyzed foraging activity and the nutritional characteristics of the diets of the relatively understudied rainforest baboons (Papio anubis) living in Kibale National Park, Uganda. I also investigated if there are differences in food type choice …

Assessment Of Tripeptides Self-Assembly & Er Stress On Cell Viability And Exosome Secretion In Mda-Mb231, Azmat Parveen

Theses and Dissertations

This study delves into the effects of tripeptides KYpF and WYpK(NBD) on MDA-MB-231 cells, uncovering KYpF's ability to reduce cell proliferation and exosome secretion in peptide treated cells. Conversely, WYpK(NBD) demonstrated significant toxicity at 10 μM. These insights pave the way for optimizing peptide-based cellular treatments for exosome secretion purposes.

Maternal And Other Social Influences On Signature Whistle Structure Of A Captive Group Of Bottlenose Dolphins (Tursiops Truncatus), Riley Synan

Theses and Dissertations

Bottlenose dolphins (Tursiops truncatus) are social animals that use acoustics as a major method of communicating across a marine environment. They also live in fission-fusion groups and thus interact with many conspecifics over a lifetime. Individual dolphins have a signature whistle that functions as an identity call and serves to maintain group cohesion in murky waters or during reconciliation. Dolphins exhibit vocal learning and the signature whistle of a calf may be modeled after the whistle of their mother or another individual in the pod as they develop. Mother-calf pairs or other related animals sometimes have similar whistle types. Some …

Assessing Comprehension And Competence In Bottlenose Dolphins (Tursiops Truncatus) On The Concept: Do Something Different, Charlotte M. Mulligan

Theses and Dissertations

Many studies have been conducted using a training paradigm based on the research of Pryor et al. (1969) wherein the participants are trained on the abstract concept: do something different. This paradigm challenges working memory and requires the participants to respond with a behavior, either previously trained or novel, which has not yet been offered within the session. The work of Braslau-Schneck (1994) expanded this concept and demonstrated the ability of dolphins to successfully complete this task in synchronized pairs, though the method of accomplishing this task remained unclear. The present research was conducted as part of a broader …

Mapping Urban Tree Canopy Using Publicly Available Satellite Data, Rosemary Mcguinness

Theses and Dissertations

This project addresses the need for accessible, cost-effective tools for quantifying spatial and temporal changes in tree canopy cover in urban areas. Urban tree canopy provides a wide range of ecosystem services, including lowering air temperatures, reducing pollution, and mitigating stormwater runoff. Cities around the world have placed the expansion of their urban forests at the center of their sustainability goals. Consistent and timely data on urban tree canopy is essential for urban greening initiatives to succeed. Existing methods of accessing information about urban tree canopy are highly technical, costly, and labor-intensive, while the freely available source of tree canopy …

An Analysis Of Fish Assemblages And Flow Regimes Upstream And Downstream Of Falcon Reservoir, Christopher J. Austin

Theses and Dissertations

The lower Rio Grande is regulated by Falcon and Amistad dams. Native fish species rely on the natural flow regime for habitat and spawning. I analyzed streamflow discharge and fish assemblages above and below Falcon Reservoir to assess potential impacts of dam impoundment. Fish collections were conducted by seine, and river discharge data was provided by the International Boundaries and Water Commission. I found significant differences in fish assemblages above vs below Falcon Reservoir, and the flow regime was significantly more altered downstream of Falcon Reservoir. I also identified two Species of Greatest Concern for Texas above Falcon Reservoir (Notropis …

Utilizing Unmanned Aerial Systems (Uas) And Computer Software To Assess Effects Of Cover Crops On Cash Crop Volumetric Mass And Plant Height, Carlos Andres Garcia Patlan

Theses and Dissertations

Sustainability in agriculture starts with the health of soil-- from its productivity and fertility, to its ability to retain water during droughts and allow for drainage during rain. One approach of improving soil health is the use of cover crops, a practice associated with improved nutrient availability in soils, the promotion of soil biodiversity and organic matter to improve density and structure, effective weed management, and ultimately improved yields of subsequent cash crops. Assessing the cumulative impacts of cover crops is difficult, with various metrics and indicators. Crop dry weight may be a way to predict the effects cover crops …

Documenting The Spatial And Temporal Dynamics Of Pair-Rule Genes In The Early Tribolium Embryo, Hasan Mahmud

Theses and Dissertations

Although Insects and vertebrates have different anatomical structures, they possess similar mechanisms for segmenting during embryogenesis. Clock and wavefront model exhibit a similar pattern of division as observed in Drosophila, like vertebrates, which emphasizes fundamental principles in the field of developmental biology. In contrast to Drosophila, the insect Tribolium castaneum exhibits posterior segmentation originating from the growth zone. The pair-rule genes’ expression is characterized by oscillatory patterns, which are controlled by a segmentation clock. Researchers found that the speed regulation model combines oscillatory and sequential gene activities to shape both elongating and non-elongating embryonic tissues. The adaptability of this model …

Impacts Of Managed Honeybee Apiaries On Native Bee Populations, Trapping Efficiencies Of Bee Sampling Methods, And Drone Based Floral Cover Analysis In High Elevation Tall Forb Communities In Central Utah, Nicholas Val Anderson

Theses and Dissertations

This dissertation investigates the impact of honeybee introductions on native bee populations, evaluates the efficiency of traditional bee sampling and monitoring methods, and explores the use of drone technology for assessing floral resources on federal lands in the United States. Federal lands, managed for multiple uses, present a valuable opportunity for the summer pasturing of honeybees. These lands produce vast floral resources and are largely free from pesticides and other pollutants that could weaken honeybee populations. The potential use of this resource is significant given the economic and agricultural concerns presented by declining pollinator trends and Colony Collapse Disorder (CCD). …

Functional & Evolutionary Analysis Of Tbx2a And Tbx2b In Zebrafish Heart Development, Maliha Tasnim

Theses and Dissertations

Congenital Heart Disease (CHD) is the most common birth defect, affecting approximately 1% of live births. This dissertation explores the genetic mechanisms underlying CHD, focusing on the T-box transcription factors Tbx2a and Tbx2b in zebrafish. Utilizing advanced bioinformatics techniques, we reconstructed the ancestral sequences of these genes to understand their evolutionary trajectory and functional divergence. Our analysis highlights the evolutionary conservation of the DNA-binding domain in tbx2a and tbx2b, suggesting its crucial role in maintaining correct gene expression patterns during development. We observed unique and shared amino acid substitutions in these proteins, indicating potential adaptive changes and conserved functions. Comparative …

Takiri Ake Nga Haeata: Lighting A Path To Increased Indigenous Leadership In Aotearoa, Kaylee Ihimaera

Theses and Dissertations

This thesis addresses the underrepresentation of indigenous Māori people in leadership positions and pursues the need to develop a Māori leadership framework aimed at empowering the next generation of indigenous people. Several frameworks have attempted to exhibit Māori leadership dynamics, each offering unique insights into the cultural and relational aspects of Māori leadership. However, existing frameworks often exhibit limitations in fully encapsulating the breadth of Māori leadership values and practices, necessitating the development of a comprehensive Māori leadership model independent of Western frameworks. Through an extensive review of existing literature and engaging with Māori experts, I synthesized key insights to …

Development Of Anti-Fibrotic Agents For Potential Use In Glaucoma Filtration Surgery To Prevent Scar Formation, Nikhala Shree S

Theses and Dissertations

Glaucoma is the second leading cause of blindness with irreversible vision loss. It is marked by the degeneration of retinal ganglion cells, which results in optic nerve head damage. Intraocular pressure (IOP) is a prime risk factor of glaucoma controlled by various treatment regimens i.e., medication, laser, and/ or surgery. It is reported that longterm exposure to anti-glaucoma medications (AGM) may subtle the surgical success rate leading to postoperative fibrosis. Transforming growth factor beta (TGF-β) is a growth factor that plays an important role in the development of glaucoma and promotes fibrosis.

This study is aimed at developing peptides to …

Interleukin 24 Induces Apoptosis Through Glycogen Synthase Kinase-3 Beta Inactivation In Prostate Cancer Cells, Sual J. Lopez, Moira Sauane

Theses and Dissertations

Interleukin 24 (IL-24) is a tumor-suppressing protein currently in clinical trials. IL-24 induces cancer-specific apoptosis by activating endoplasmic reticulum (ER) stress and mitochondria dysfunction. We have previously demonstrated that IL-24 leads to apoptosis in cancer cells by protein kinase A (PKA) activation in human breast cancer cells. To further understand the mechanism by which IL-24 induces apoptosis, I analyzed the role of glycogen synthase kinase-3 (GSK3), a highly conserved and normally active serine/threonine kinase in cancer cells and downstream target of PKA. The work reported here provides direct evidence that GSK3 was inhibited following IL-24 treatment in human prostate cancer …

Lactobacillus Rhamnosus Interactions With Foodborne Pathogens And Impact On Plant Productivity In A Model Hydroponic System, Esther Titilope Oginni

Theses and Dissertations

Food production is a global problem, and this has been further compounded with changes in weather patterns necessitating the need for a sustainable approach to production. Chapter 1 introduces the broad concept of the Control environment agriculture (CEA) and then narrows it doe to the hydroponic system its food safety risks. The CEA has been employed alongside conventional practices methods to improve meet the demand for food without placing pressure on the land available. Foodborne outbreaks have been recorded in the production medium and are therefore susceptible to contamination. In Chapter 2, the study focused on using Lactobacillus rhamnosus and …

Collegiate Student-Athlete Responses To The Covid-19 Pandemic, Alexa Jenny Chandler

Theses and Dissertations

Introduction: Exercise imposes a physiological stressor on the body which is amplified as training intensifies. Collegiate fall-sport student-athletes return after summer break (off-season) and have approximately two weeks of training (preseason) with coaching staff before competition begins. The 2020 fall season was preceded by a five-month period away from campus due to the timing of the coronavirus 2019 (COVID-19) pandemic. This also meant all commercial gyms and training facilities were closed, and student-athletes were forced to train with the resources they had at home. Upon return to campus, significant changes were made to practice and competition structures in attempt to …

Decisions, Decisions: Dna Damage Induced Modification Of P53 And The Effect Of Modifications On P53 Differential Binding To The Dna, Savannah Gabrielle Keating

Theses and Dissertations

p53 is the most frequently mutated tumor suppressor protein in cancer. It is highly regulated, most often via post-translational modifications (PTMs). Different pathways and target genes are differentially activated by p53 and there is much left to understand how this occurs. The regulation of p53 at the post-translational level is incredibly important to its DNA damage response, and, therefore, it is understood that PTMs are often involved in the differential activation of pathways by p53. This project aimed to identify some of the types and locations of post-translational modifications on p53 in response to different modes of DNA damage with …

Accessory Eyes And Dynamic Color Change In Palaemon Vulgaris, Nicholas Raymond Steichmann

Theses and Dissertations

Eyes are physiologically costly organs to produce and maintain, making the development of secondary eyes intriguing. Caridean shrimp possess reflecting superposition primary eyes, but some species across fourteen families possess an additional pair of eyes called accessory eyes along the dorso-posterior margin of the primary eyes. Secondary eyes are found in lizards, lampreys, and insects, where they often function as illumination detectors. Some shrimps may use accessory eyes to signal endocrine organs in their eyestalks to alter the pigmentation of their carapace providing better camouflage through disruptive coloration. To investigate the role of accessory eyes in dynamic color change we …

A Careful Examination Of The Parameters Impacting The Study Of Plant/Bacteria Interactions, Caroline Victoria Royals

Theses and Dissertations

Our laboratory has been studying how different Caulobacter strains impact Arabidopsis plant growth. While reading papers published by other laboratories, I noticed inconsistencies in the methods used by different plant/bacteria interaction studies. For example, a variety of different variables have been used for defining a bacterium as Plant Growth Promoting (PGP). To establish a baseline, I conducted longitudinal studies that examined the impact of bacteria on all phases of a plant’s life. I found that individual Caulobacter wild type strains impact different aspects of plant growth. In addition, I continuously encountered problems with within and between pot variation in plant …

Optimization Of A Nanotechnology-Based System For The Treatment Of Electroplating Wastewater, Madeleine Mary Meyer

Theses and Dissertations

To protect humans and the environment, human actions that may expose living organisms to toxic metals are heavily regulated in developed countries. The use and production of toxicants in commercial applications is tightly controlled in the United States of America by federal and state laws. Due to this fact, United States manufacturing companies are required to control the amount of regulated toxicants that leave their facilities. Toxic metals in wastewater are heavily regulated by federal and state law, with manufacturing facilities permitted individually for the concentrations of metals they are allowed to discharge via their wastewater. From previous research conducted …

Interface Between Sensorimotor Dynamics And Trunk-Hip Movement Control: Implications For Movement Assessment In Low Back Pain, John Ryan Gilliam

Theses and Dissertations

Low back pain is the leading cause of activity limitation and work absence and results in billions of dollars in healthcare expenditures. Impaired trunk-hip movement control is associated with the development of back pain and the persistence of symptoms. Theories suggest a causal relationship between altered sensorimotor dynamics, including altered afferent somatosensory information from the periphery and neuroplastic central nervous system adaptations, and impaired trunk-hip movement patterns. We characterized trunk-hip movement patterns and their associated sensorimotor brain dynamics in people with and without chronic low back pain (cLBP). Supine, atop an instrumented system, 48 individuals with cLBP and 37 healthy …

Leaf Development In The Reproductive Phase Of Arabidopsis: Investigating The Mechanics Of Cauline Leaf Identity And Bract Suppression, Darren Paul Manuela

Theses and Dissertations

Leaves in the reproductive phase subtend inflorescences or flowers and exhibit diverse morphological modifications specialized for reproductive success, such as attracting pollinators, protecting flowers/fruit, and photosynthesis. Using the model organism Arabidopsis, we investigated the development of these specialized leaves. In Arabidopsis, uniquely shaped cauline leaves subtend inflorescences, protect young floral buds and exhibit increased photosynthetic activity crucial for seed production. As form affects function, we analyzed gene expression patterns by RT-qPCR and GUS reporter genes in cauline leaves and examined mutant phenotypes with defective cauline leaf morphology. Our results reveal that redundant miR156-targeted SPLs function to promote cauline leaf identity …

The Role Of Nr4a Transcription Factors In The Body And Their Effects In The Pancreatic Beta Cell, Jacob A. Herring

Theses and Dissertations

A central aspect of type 1 and type 2 diabetes is decreased functional β-cell mass which leads to systemic glucose dysregulation. Functional β-cell mass takes into account β-cell insulin secretion, β-cell proliferation, and β-cell survival. Several treatments are currently used to help maintain glucose levels in individuals with diabetes. However, cures for these diseases are not available due to inability to expand functional β-cell mass. Transcription factors control expression of target genes critical for various functions, and transcription factors that control β-cell function, proliferation and survival play a significant role in β-cell development and function. A more thorough examination of …

Development And Characterization Of Β-Cyclodextrin Inclusion Complexes With Enzalutamide For Easing Administration And Efficacy Of The Drug In Crpc, Meghana Kolli

Theses and Dissertations

Prostate cancer (PC) is prevalent among men in the US, often leading to castration-resistant prostate cancer (CRPC) with therapy. This is marked by androgen receptor (AR) overexpression, resistance, mutations, and splice variants. Enzalutamide (ENZ), a nonsteroidal antiandrogen, surpasses first-gen AR inhibitors like Bicalutamide. It's the go-to drug for CRPC. We explore ENZ for self-assembly complex formation, crucial for CRPC treatment. Using the solvent evaporation method, we developed β-cyclodextrin and ENZ self-assembly complexes (β-CD-ENZ). β-CD acts as both agent and solubilizer, FDA-approved and safe. Efficacy was tested on PC cell lines (C4-2B) and (22Rv1), including 3D cultures for cytotoxicity and a …

Characterizing The Quorum Sensing (Qs) System In The Model Eukaryote Chlamydomonas Reinhardtii, Kirstin Donnette Cutshaw

Theses and Dissertations

Group behaviors in microorganisms are often regulated by low-molecular weight molecules that enable them to sense population density, a signaling system known as quorum sensing (QS). QS in prokaryotes has provided insight into the role ‘social’ behaviors play in the bacterial world and refined our models of virulence, bacterial motility, and more. While less common, similar behaviors are observed in certain fungi, primarily yeasts, in which QS controls cell morphology, biofilm production, and other phenotypes. We have recently pursued the potential for QS to be more broadly distributed among unicellular eukaryotes, which could significantly alter our understanding of social behaviors …

Using Unmanned Aircraft Systems (Uas) To Assess Body Condition Of Common Bottlenose Dolphins (Tursiops Truncatus Truncatus) In The Indian River Lagoon, Florida, Jessica Jane Provenzano

Theses and Dissertations

Common bottlenose dolphins (Tursiops truncatus truncatus) in the Indian River Lagoon (IRL) have experienced four Unusual Mortality Events (UMEs). This stock is considered immunocompromised and is routinely subjected to persistent anthropogenic stressors such as fishing gear entanglement, vessel strikes, contaminants, and harmful algal blooms. Previous body condition assessments of this stock have involved invasive capture-release examinations or subjective methods using lateral body images. To improve precision, we investigated the use of photogrammetry data collected from noninvasive unmanned aircraft systems (UAS) combined with models developed from capture-release data to estimate morphometric parameters and subsequently determine the body condition of …