Life Sciences Commons^™

Exploring Secondary Metabolite Profiles Of Sloth Algae, Valerie Quach, Paige Smith

Honors Theses

In this experiment, we investigated the composition of the secondary metabolites in sloth algal cultures. Additionally, we investigated the effects of secondary metabolites in sloth algal cultures on insects. The three outlets of investigation include insect avoidance tests, sending samples to the Natural Center for Natural Products Research, and analyzing sequencing data with AntiSMASH to identify secondary metabolite biosynthetic gene clusters. While our data from the Drosophila fly tests were inconclusive, we found that our samples contain many different gene clusters for terpenes, NRPS, PKS, RiPPs, which are volatile compounds with a wide array of biosynthetic functions. This research can …

Evaluation Of The Effect Of The Humic Acid Inhibitor On Forensic Genetic Investigations Of Human Skeletal Remains, Madeline King

Honors Theses

Postmortem survival of DNA in human skeletal remains occurs due to the compact microstructure of the skeleton and its ability to provide a strong, protective physical barrier to environmental insults. On a molecular level, DNA preservation in bones/teeth involves electrostatic interactions between the negatively-charged DNA backbone and positively charged calcium residues in hydroxyapatite, the latter of which is one of the main components of bone microstructure. Despite these protections, over time endogenous DNA becomes damaged, limiting our ability to detect it and affecting its utility in making a positive identification. Hence, forensic genetic investigations of unidentified human remains (UHRs) are …

Extraction Of Human Dna From Soil In A Simulated Clandestine Grave, Arely Joaly Parra Lopez

Honors Theses

Locard’s Exchange Principle states that “every contact leaves a trace.” The same principle applies when a perpetrator of a homicide decides to bury a victim in a clandestine grave. If a perpetrator originally buried a murder victim in haste to prevent discovery and then decided to later move the victim’s body to a remote location for disposal, decomposition fluids from the victim’s body (which contain cellular material and therefore DNA) would remain in the surrounding grave soil at the original burial site. It is possible that investigators could: 1) prove that a human body had once laid in that location …

Ecology Of Estuarine Birds: Differences In Desensitization Of Year-Round And Transient Species, Sarah Thomas

Honors Theses

Huntington Beach State Park in Murrells Inlet, SC, USA is considered a “hotspot” for birds, according to the eBird database (eBird, 2020). The park is also visited by approximately 300,000 people, annually (Hobdy, 2019). The causeway at the park is an area of high human and wildlife activity. Here, the differences in desensitization, or lack thereof, of year-round and transient bird species to the stimuli of vehicles and humans were determined. Multiple surveys of the birds at Huntington Beach State Park were conducted from 22nd September, 2019 to 13th June, 2020. Desensitization was quantified by use of a range finder …

Research Towards Understanding Hox Regulation By Cdx, Joshua M. Fisher

Honors Theses

In this project, we aim to functionally test the contribution that individual Cdx binding sites have in hox gene regulation. We will achieve this by individually blocking Cdx binding sites using CRISPR/dCas9 in the zebrafish and then analyzing changes in the time, distribution, and levels of hox gene transcription.

We will focus our analysis in only one of the seven zebrafish hox clusters, the hoxca cluster. We are focusing on the hoxca gene cluster because it has lost the least number of genes relative to other clusters and is involved in specifying the axial identity of cells in …

Bringing Biochemistry Home: Transforming Milk Into Yogurt, Ashley King

Honors Theses

Communicating the beauty and complexity of biochemistry to students in a large classroom during the pandemic: what a challenge! We undertook a novel endeavor in the Department of Chemistry and Biochemistry by introducing a mandatory kitchen chemistry experiment in a lecture course. Milk, the epitome of our identity as mammals, also contains all of the major biochemical macromolecules studied in Biochemistry I. Further, the making of yogurt invokes physical processes that are the major processes and molecular forces that dominate the content of the course. Here, we report the results of massive parallel experiment conducted in the kitchens of the …

Determination Of Metals And Microplastics In Sediment From Oyster Reefs In The Mississippi Sound, Shelby Goza

Honors Theses

This research centers on the determination of metals (Cd, Pb, V, Cr, Mn, Fe, Co, Ni, Cu) and microplastics (MPs) in marine sediment from oyster reefs in the Mississippi Sound Estuary. Oysters (Crassostrea virginica) are a vital part of the Gulf Coast economy, but their population has dramatically declined in recent years due to multiple stressors, including oil spills and fluctuations in salinity from flooding. Increasingly frequent flooding events also introduce high loads of MPs and sediments containing heavy metals from the Mississippi River. These pollutants can have deleterious effects on oyster biology; however, they have not been adequately …

Composition And Oxidative Potential Of Fine Particulate Matter From Pascagoula, Ms, Madison Smith

Honors Theses

Air pollution is one of the top-ranking risk factors for death and disability around the world, accounting for nearly 4.9 million deaths worldwide (State of Global Air, 2019). Specifically, fine particulate matter (PM_2.5) has been linked to many adverse effects on human health, yet there is very little known about what characteristics exactly cause these adverse health effects and how they cause them. Samples for this study were collected from Pascagoula, MS, a small town located on the Mississippi Gulf Coast that is home to many industrial yards, from September 2013 to December 2013. Black carbon (BC) analysis …

Predator-Prey Interactions Between Escherichia Coli Strains And Caenorhabditis Elegans At Various Temperatures And Resource Levels, Elizabeth Haynes Whitaker

Honors Theses

Predation is an important component of both evolutionary and ecological interactions across nature. The predator-prey relationship can be altered by differential species’ responses to changes in abiotic factors. The purpose of this study was to examine the effect of temperature, resource levels, and their potential interactions using two strains of Escherichia coli prey and a Caenorhabditis elegans predator. It is concluded that an interaction exists between temperature and resource level on this predator-prey relationship however further testing must be done to confirm results due to contamination in the results.

Covalent Modification Of Genetically Engineered Polymers With Bodipy Fluorophores, Emilie Smith

Honors Theses

Osteoarthritis and other debilitating diseases cause chronic pain that is difficult to manage. Nonsteroidal Anti-inflammatory Drugs (NSAIDs) are the current standard of treatment for many long-term pain management, but there are potential systemic effects when using NSAIDs long-term. Therefore, it isnecessary to have an alternative option for NSAID delivery that doesn’t include these systemic effects. Hydrogels can be that alternative option. Hydrogels’ distinct characteristics allow them to be viable in the body, degrade under unique conditions, and be modified through many different chemistries. Additionally, hydrogels can be engineered and their properties optimized for the use as a drug depot inside …

Chemical And Co-Solute Effects Of Polyethylene Glycol On I-Motif Formation, Lindsey Rutherford

Honors Theses

DNA typically forms Watson and Crick double helix structures in which adenine, thymine, guanine, and cytosine pair with their complimentary DNA base. However, DNA i-motif structures can form in cytosine rich DNA, typically under slightly acidic conditions (~pH 6). DNA i-motifs are four stranded secondary structures in which cytosine pairs with cytosine to form a quadruplex. The i-motifs are typically formed in acidic conditions because of the protonation in the C•C base pair between one of the three hydrogen bases. Recent studies have suggested i-motifs can also form under neutral conditions, which is more realistic for a cell. It is …

Systematic Review Of Race/Ethnicity In Parkinson's Disease, Amia Fisher

Honors Theses

The goal of this study was to examine race/ethnicity with an emphasis on African Ancestry in Parkinson’s Disease (PD) through a systematic review. Out of 448 scholarly articles that were originally extracted from the search, 445 were excluded due to their irrelevance regarding race/ethnicity and African ancestry in PD. Three scholarly articles were obtained through a PubMed/MEDLINE search for the review. Amongst the three sources that were chosen, there were more than 450,000 participants with PD that ranged in ages 40-65+; each case of PD within these studies were reported from 1993-2005. The varying races/ethnicities of White/non-Hispanic White, Black/African American, …

Investigations Involving Mononuclear And Dinuclear Transition Metal Catalysts For Photochemical Carbon Dioxide Reduction, Ansu Edwards

Honors Theses

There is currently a global energy crisis, which is in desperate need of solutions. New energy sources are required that will not pollute as much as our longstanding reliance on nonrenewable fossil fuels as an energy source. This pollution involves large amounts of greenhouse gas emissions, predominantly carbon dioxide (CO₂), that contribute to environmental problems such as climate change. In this context, a fairly recent research direction to address this problem is the development of transition metal catalysts that can convert CO₂ into reduced carbon products that can serve as chemical fuels. This work focuses on the …

Diagnostic Approaches To Combat Antibiotic Resistance In Bacteria, Alexander Oliveri, Shade Smith, Anshul Anugu

Honors Theses

The threat of antibiotic resistance is a major problem faced by the healthcare field affecting millions of people and costing tens of thousands of lives annually. Of the potential ways to mitigate this issue the field of antibiotic resistance testing presents an opportunity for significant improvement and benefits. Several methods of such diagnostic processes can yield more informative results than the current commonly used Kirby-Bauer test. However, there are benefits and limitations to each method. In the context of a clinically relevant diagnostic for antibiotic resistance, the microarray platform exhibits the necessary breadth with opportunities to overcome some limitations with …

Purification Of Pcbp2 And Its Effect On The Formation Of Dna I-Motifs And Secondary Structures, Nathan Redden

Honors Theses

Several secondary, non-B forms of DNA are associated with the promoter regions of many oncogenes, including the intensely studied c-MYC gene that codes for a transcription factor. Two such secondary structures, G-quadruplexes, and i-motifs, have become topics of interest due to their prevalence within oncogenic promoters, as well as their potential accessibility for drug targeting. B-form DNA can adopt alternative structures under certain conditions. These alternative structures are favored when there is an asymmetric distribution of guanosine and cytosine on complimentary DNA strands. The strand rich in guanosine is able to form a quadruple stranded DNA complex termed a G-quadruplex. …

Effects Of Crowding Agents On I-Motif Dna, Hayden Brines

Honors Theses

Deoxyribonucleic acid (DNA) is a well-known double stranded, helical, biological molecule. In addition to its more commonly known structure, DNA can also form more complicated structures like G-quadruplexes and i-motifs (iM). The iMs are formed by cytosine rich DNA and are a four stranded structure that is typically looped around itself. The iM formation is typically pH-dependent and is favored in more acidic conditions; the pKa value is approximately 6.5. This pKa value allows for potential in vivo formation, since the cells have a pH of approximately 7.3. Due to this, iMs are thought to be powerful, innovative molecules for …

Impact Of Covid-19 On Physical Activity And Health Influences Among College Students, Rachael Larkin

Honors Theses

Objective: To assess the associations between physical activity, subjective well-being (SWB), and social media influences before, during, and after the 2020 COVID-19 period among college-aged students. Participants: Male and female students from the University of Mississippi who were between the ages of 18-25 volunteered to participate in this study. Out of 10,000 invitation emails distributed, a total of 290 individuals responded and were used for the subsequent analysis. Results: Almost half of the respondents (46.1%) noted a decrease in physical activity from before March-May (M-M) 2020 to during M-M 2020. In addition, 41% of the respondents reported an increase in …

Responses Of The Carnivorous Pink Spoonleaf Sundew (Drosera Capillaris) To Nitrogen Addition, Phosphorus Addition, And Simulated Fire, Karina Rodriguez Castillo

Honors Theses

This study investigated how the carnivorous plant, Drosera capillaris(pink sundew), responded to changes in the resources of its habitat, the fire-prone, nutrient-poor wet savannas. It is of interest to determine what soil nutrient(s), nitrogen or phosphorus, limits the survival and growth of pink sundew, and to what extent, if any, does fire affect the survival and growth of this carnivorous plant. My field experiments had twenty plots with two replicate groups consisting of four pink sundews in each plot. From the fall of 2017 to the fall of 2019, only half of the plots were clipped annually, and there …

Has Maize Overtaken Our Reality? A Personal Briefing, Biochemical Comparison, Agrigenomics, And History Of Maize, Nader Pahlevan

Honors Theses

Maize (Zea mays ssp. Mays) is a revolutionary cereal grain that has raced to the world’s most popular staple crop, transforming societies and impacting history. This paper aims to build and portray the story maize has created through its journey to world domination. The important details that encompass this literature are maize’s cultural significance in my life’s story, the comparison of various starches broken down into amylose and amylopectin ratios, a summative historical account on maize’s spread throughout numerous parts of the old world, and the genetical analysis of maize that explains the key features that have led …

Construction And Analysis Of Three Multi-Partite Synthetic Microbial Communities, Alexander J. Lazzara, Jacob K. Fanning

Honors Theses

Microbial Communities are of interest to molecular biologists hoping to understand the nature of metabolic interactions between co-existing, or possibly mutualistic, organisms. These interactions are ubiquitous in nature, but understanding the molecular mechanisms involved remains challenging and not well understood. Here, we design three tri-partite microbial circuits based on possible interactions among involved microbes, which are discussed and may suggest mutualistic interactions. Carbon and nitrogen molecular pathways and the intracellular metabolism of each microbe is discussed. We present minimal growth media that will ensure that organisms utilize available resources, which may originate from metabolic processes in neighboring microbes, simulating a …

Effectiveness Of Visual Representations In Undergraduate Human Anatomy And Physiology I & Ii, Mary Agnes Mestayer

Honors Theses

The objective of this project was to explore intersections between student preferences and student performance on anatomical visual representations in Human Anatomy and Physiology I and II. Visual representations are a critical resource for the formation of relationships between function and structure furthermore; students interpret these representations uniquely based on specific factors (learning objective, prior knowledge, the diagram studied, etc.). Phase I of this project gathered undergraduate responses to ten Likert-style questions on their opinions on diagrams and their use in the A&P classroom. Phase II of this project presented participants with twelve manipulated diagrams sourced from three diagram with …

Incorporating Demographic Structure And Variable Interaction Types Into Community Assembly Models, Akhil Reddy Alasandagutti, Nayan Chawla

Honors Theses

Theoretical studies of ecological food webs have allowed ecologists to remove the constraints of specific location and timescales from their study of ecological communities; food webs are generally complex and thus empirical study is difficult. Further, this theoretical approach allows ecologists to compare ecological processes and outcomes across any possible food web structures. However, these simulated communities are only as useful as the model from which they were constructed. Modifying existing considerations in these models, and generating new ones, are the jobs of theoretical ecologists that seek to achieve the shared goal of a majority of simulations: representation of real …

Responses To Fine Particulate Matter (Pm2.5) Exposures In Two Wild-Type Zebrafish Strains, Connor Necaise

Honors Theses

Atmospheric fine particulate matter (PM_2.5) exposure poses great health risks across the globe, causing both acute and chronic illnesses in humans. Therefore, a more complete understanding of the mechanisms in which PM_2.5 induces these adverse health effects is urgently needed. Oxidative stress due to PAHs and other common components of PM_2.5 is a proposed mechanism for its adverse health effects. However, little is known about the actual mechanisms of PM_2.5 damage in humans. This study aimed to distinguish behavioral differences in two lines of zebrafish (AB & 5D) as a result of developmental exposure to …

The Effect Of Agkistrodon Contortrix And Crotalus Horridus Venom Toxicity On Strike Locations With Live Prey., Chase Giese

Honors Theses

This paper aims to uncover if there is a significant difference in the strike location of snake species that have different values of LD50% venom. It is thought that most snakes strike their prey in the anterior (head) area in order for their venom to work quicker in killing them. Venom toxicity is measured by its LD50% value, which is the amount of venom, in mg/kg, to kill 50% of a test population. The Copperhead has an LD50% value of 10.9 mg/kg, and the Timber Rattlesnake has an LD50% value of 1.64 mg/kg. The hypothesis was that if venom toxicity …

Determine The Effects Of Propionate On The Interactions Between Macrophages And Listeria Monocytogenes, Stephanie M. Johnson

Honors Theses

Listeria monocytogenes is an opportunistic and intracellular foodborne pathogen that can be deadly in high risk populations. During infection in the human body, L. monocytogenes may encounter macrophages, a type of white blood cell that is critical in innate immune response both by directly targeting invading pathogens and by eliciting adaptive immune responses. During intestinal as well as peripheral infections, both L. monocytogenes and macrophages may encounter propionate, a common gut microbiome metabolite. Although propionate is shown to have various regulatory and nutritional functions, its effects on infection outcome is not well understood. Therefore, the goal of this research is …

An Exploration Of The Widely Observed Mechanisms Permitting Freeze Tolerance & The Potential Of Cope’S Gray Treefrog, Dryophytes Chrysoscelis, Samuel A. Ripley

Honors Theses

Over 80% of the Earth’s surface is exposed to seasonal cold temperatures less than 5.0oC. Ectotherms implement a variety of strategies to survive seasonal, or permanent, cold exposure. Some of the most common overwintering strategies are migration, hibernation, and freeze avoiding behavior. However, freeze tolerance is a minority choice among ectotherms. This strategy permits organisms to survive between 50.0 to 70.0% of their total body water volumes frozen primarily in extracellular spaces for up to several months at a time. Freeze tolerant organisms undergo minimal supercooling of their body fluids to ensure ice formation is slow and produce a wide …

Investigating The Effects Of A P53 Mutation And Various Tyrosine Kinase Inhibitors On Glioma Progression And Therapy Resistance In Drosophila, Kaitlyn M. Alleman

Honors Theses

Gliomas, which are brain tumors that arise from glial cells, are some of the most aggressive and lethal types of tumors. These brain tumors are difficult to treat because not enough information regarding the mutations present in these tumors exists. This project studies effects of a p53 mutation on Drosophila glioma progression and then will test to see if this results in resistance to current chemotherapy. The main goal of this endeavor is to investigate the numerous defects occurring at the cellular and biochemical level in gliomas, which will give insight into why these types of tumors are so difficult …

Leaf Phenology And Freeze Tolerance Of The Invasive Tree Pyrus Calleryana (Rosaceae) And Potential Native Competitors, Abby E. Hay

Honors Theses

Pyrus calleryana is quickly becoming one of the most problematic invasive species in the Eastern and Central part of the United States. Pyrus calleryana is an early successional species that quickly proliferates in highly disturbed soils such as old fields and younger prairies. Currently, this species poses a large threat to land managers as it changes the successional trajectories of forest and prairie systems, creating new novel ecosystems. Pyrus calleryana outcompetes most native early successional species and is relatively understudied. The mechanism in which Pyrus calleryana utilizes to dominate ecosystems are not fully understood, but one theory is Pyrus calleryana …

Determine The Effects Of Propionate On The Activation Of Macrophages Against The Intracellular Pathogen Listeria Monocytogenes, Leah O. Allen

Honors Theses

The main goal of this research is to see how propionate, a common food preservative and an important metabolite in humans, alters the activation of our immune system. The effects of propionate on macrophage activation will be determined by using nitrite and LDH assays. For these assays, different concentrations of propionate will be tested to determine how macrophages respond to the activation by LPS and interferon gamma. Another goal of this project is to determine the effects of propionate and macrophage activation on intracellular survival of L. monocytogenes. A gentamicin protection assay will be used to better establish the role …

Headache-Related Disability Among Individuals With And Without Migraine Aura, Delora Denney

Honors Theses

Migraine is a neurological disease marked by recurrent headache and migraine attacks. Migraine is one of the most common diseases in the world, and as a result of high prevalence and symptoms, migraine is also quite disabling. One-third of people who have migraine experience aura, and these individuals have a greater risk for stroke, psychiatric comorbidities, and suicide attempts. The present study aimed to evaluate if there was a difference in headache-related disability between those who have migraine with and without aura, and any headache or psychiatric factors that may account for observed difference in disability.

The present study is …