Life Sciences Commons^™

The Geometry And Sensitivity Of Ion-Beam Sculpted Nanopores For Single Molecule Dna Analysis, Ryan Connor Rollings

Graduate Theses and Dissertations

In this dissertation, the relationship between the geometry of ion-beam sculpted solid-state nanopores and their ability to analyze single DNA molecules using resistive pulse sensing is investigated. To accomplish this, the three dimensional shape of the nanopore is determined using energy filtered and tomographic transmission electron microscopy. It is shown that this information enables the prediction of the ionic current passing through a voltage biased nanopore and improves the prediction of the magnitude of current drop signals when the nanopore interacts with single DNA molecules. The dimensional stability of nanopores in solution is monitored using this information and is improved …

Measuring The Energy Required To Dry Rice In Commercial Rice Dryers, Maria Alejandra Billiris

Graduate Theses and Dissertations

The objective of this research was to quantify and assess the energy use and efficiency of commercial cross-flow dryers when drying rice using a range of drying and ambient conditions. First, equations that predict the theoretical energy required to dry rice from any given initial moisture content to a desired final moisture content were developed for several rice cultivars using a semi-theoretical approach to obtain a basis for comparison to calculate energy efficiency. Theoretical energy requirements, expressed as the energy required per unit mass of water removed, increased exponentially as initial moisture content decreased. Additionally, medium-grains required more energy to …

Litter Conditioning Is Differentially Affected By Leaf Species, Phosphorus Enrichment, And Light Availability, Erin E. Scott

Graduate Theses and Dissertations

Anthropogenic enrichment of nitrogen and phosphorus is one of the most pervasive and detrimental threats to aquatic ecosystems worldwide. In streams that rely on allochthonous basal food resources, such as leaves, nutrient pollution can result in altered food quality and decreased carbon (C) standing stocks. However, the magnitude and mechanisms of this change in quality are poorly understood. Laboratory microcosm studies were conducted to 1) quantify the response of litter C:P to a gradient of phosphorus (P) enrichment (0, 0.05, and 0.5 mg SRP/L) across leaf species with variable levels of degradability (sugar maple and oak), and 2) quantify the …

The Life History Of Larinus Minutus, A Biological Control Agent Of Invasive Knapweeds, And Its Dispersal From Release Sites In Arkansas, Adam M. Alford

Graduate Theses and Dissertations

Larinus minutus Gyllenhal, a biological control agent of invasive knapweeds, has become established in several states and provinces since initial North American introduction in 1991. In order to reduce growing spotted knapweed populations in Northwest Arkansas, Larinus minutus (a biological control agent of spotted knapweed) was released annually from 2008-2011. Little is known about the larval development of this species, although the widespread use of this insect has provided research describing detailed host range and generalized life history. The speed and extent of the spread of this weevil from release sites following introduction have not been reported. This research described …

Glyphosate-Resistant Palmer Amaranth (Amaranthus Palmeri) In Arkansas: Resistance Mechanisms And Management Strategies, Griff Michael Griffith

Graduate Theses and Dissertations

Since 2000, there have been thirteen weed species confirmed resistant (R) to glyphosate in the United States, six of those resistant species are present in Arkansas. The goal of this research was to confirm and to determine the level of resistance in two R Palmer amaranth biotypes from Mississippi (MC-R) and Lincoln (LC-R) Counties, Arkansas, and one susceptible (S) biotype from Clarendon County, South Carolina, which had never been exposed to glyphosate. Shikimic acid concentration over time was significantly greater in the S biotype than both the MC-R and LC-R biotypes. The lethal dose required to kill 50% (LD_{50 …}

Effects Of Using Canola Meal As A Protein Source In Broiler Diets, Charles Danny Bradley Jr

Graduate Theses and Dissertations

Six experiments were conducted to evaluate the response of broilers fed canola meal. Experiment 1 assessed performance and carcass yields when broilers were fed various combinations of canola and soybean meal in nutritionally balanced diets based on digestible amino acid values. The results suggested that canola meal can be used in isocaloric diets as a partial replacement for Soybean meal.

Experiment 2 assessed broiler performance and carcass yields when using various levels of canola meal in broiler diets with a constant level of supplemental poultry oil. The resulting data suggested when diets are formulated with a constant level of supplemental …

Qcm Aptasensor For Rapid And Specific Detection Of Avian Influenza Virus, Luke Brockman

Graduate Theses and Dissertations

There has been a need for rapid detection of avian influenza virus (AIV) H5N1 due to it being a potential pandemic threat. Most of the current methods, including culture isolation and PCR, are very sensitive and specific but require specialized laboratories and trained personnel in order to complete the tests and are time-consuming. The goal of this study was to design a biosensor that would be able to rapidly detect AIV H5N1 using aptamers as biosensing material and a quartz crystal microbalance (QCM) for transducing method. Specific DNA aptamers against AIV H5N1 were immobilized, through biotin and streptavidin conjugation, onto …

Interactions Between Ions And Lysenin Nanochannels And Their Potential Applications As Biosensors, Radwan Awwad Al Faouri

Graduate Theses and Dissertations

Lysenin is classified as a pore-forming toxin protein that is isolated from the earthworm Eisenia fetida and consists of 297 amino acids [1]. Lysenin inserts large conducting pores (3.0-4.7 nm in diameter) into artificial membranes (BLM) which include sphingomyelin. These pores (channels) are open and oriented upon insertion into the bilayer lipid membrane. Lysenin channels gate at positive voltages (voltage-induced gating), but not at negative voltages. Lysenin pores also exhibit activity modulation in response to changes in ionic strength and pH, indicating that electrostatic interaction is responsible for Lysenin conductance activities. In this line of inquiries, and by modulating Lysenin …

Development Of A Predictive Modeling System For Validation Of The Cumulative Mirobial Inactivation Of The Salmonellae In Pepperoni Utilizing A Non-Pathogenic Surrogate Microorganism (Enterococcus Faecalis), Scott Donald Stillwell

Graduate Theses and Dissertations

Salmonellosis is the most frequently occurring bacterial foodborne illness in the United States and the human case rate has not improved for the past two decades. The federal agency responsible for oversight of meat and poultry processors has announced the intent to extend existing pathogen reduction performance standards for Salmonella spp. to cover all classes of products including fermented sausages that are currently produced under HACCP plans that are validated for control of Escherichia coli O157:H7. The proposed regulatory modifications will require processors to revalidate HACCP plan controls to achieve either a 6.5 or a 7.0 log10 inactivation of the …

Ecology And Flock-Following Behavior Of The Wedge-Billed Woodcreeper In Eastern Ecuador, Abigail Darrah

Graduate Theses and Dissertations

The wedge-billed woodcreeper (Glyphorynchus spirurus) is a common understory suboscine passerine of lowland Neotropical rainforests. It frequently joins mixed-species understory flocks but also regularly forages alone, and thus is an excellent model species on which to conduct comparative behavioral observations to examine the hypothesized costs and benefits of flock-following. Individuals exhibit variable flocking propensities (proportion of time spent with flocks), and thus observing the correlations between flocking propensity and physical and environmental factors can provide further insight into the importance of flock-following to the ecology of this species. Despite its abundance at many sites and its wide geographic range, surprisingly …

Resistance Screening And Control Options For Glyphosate-Resistant Palmer Amaranth (Amaranthus Palmeri) In Cotton (Gossypium Hirsutum), Ryan Christopher Doherty

Graduate Theses and Dissertations

In the mid-2000's, glyphosate-resistant Palmer amaranth biotypes began to emerge in many southern states. In 2006, glyphosate-resistant Palmer amaranth was identified in a field in Mississippi County, Arkansas. A greenhouse experiment was conducted in 2008 to screen Palmer amaranth accessions, collected in this survey, for glyphosate resistance. Inflorescence were collected from a total of 276 plants from fields were glyphosate failure occurred, representing 74 accessions in 14 counties, including Clay, Craighead, Crittenden, Greene, Jackson, Jefferson, Lawrence, Lee, Mississippi, Phillips, Poinsett, Randolph, St. Francis, and White Counties. Eight of the 74 accessions did not produce viable seed. In the greenhouse, 32 …

Characterization And Epidemiology Of Soybean Vein Necrosis Associated Virus, Jing Zhou

Graduate Theses and Dissertations

Soybean vein necrosis disease (SVND) is widespread in major soybean-producing areas in the U.S. The typical disease symptoms exhibit as vein clearing along the main vein, which turn into chlorosis or necrosis as season progresses. Double-stranded RNA isolation and shot gun cloning of symptomatic tissues revealed the presence of a new tospovirus, provisionally named as Soybean vein necrosis associated virus (SVNaV). The presence of the virus has been confirmed in 12 states: Arkansas, Illinois, Missouri, Kansas, Tennessee, Kentucky, Mississippi, Maryland, Delaware, Virginia and New York. Symptomatic samples collected from eight states (AR, IL, MO, MS, KS, TN, MD and DE), …

False Smut Of Rice: Histological Analysis Of Infection, Liem Thi Thanh Nguyen

Graduate Theses and Dissertations

False smut of rice, caused by Ustilaginoidea virens (Cooke) Takahashi (Teleomorph: Villosiclava virens), has become a common disease in most major rice growing regions throughout the world. Considerable confusion exists regarding the infection process and the disease cycle. Therefore, a clearer understanding of pathogenesis caused by Ustilaginoidea virens is critical for future efforts to develop genetic and chemical tools to manage false smut in Arkansas and other regions of the world. The overall goal of this research was to clarify the infection process underlying false smut, with emphasis on comparing and contrasting the histological basis of root and foliar infections. …

Taxonomy And Dna Barcoding In The Genus Manfreda (Salisb.) Asparagaceae, William David Ritchie

Graduate Theses and Dissertations

The genus Manfreda Salisb. of Asparagaceae is a genus of potential horticultural interest and is currently subject to breeding efforts at the University of Arkansas. A lack of taxonomic clarity however undermines the classification of potential inter - and intrageneric hybrids. The study aims to assess existing species delimitation within the genus Manfreda employing morphology while investigating the potential utility of Consortium for the Barcode of Life Plant (CBOL) DNA Barcodes for identification of specific taxa and an External Transcribed Spacer (ETS) - Internal Transcribed Spacer (ITS) DNA barcode for developed hybridized taxa.

Observation of 855 herbarium specimens facilitated phylogenetic …

Expansion Of Human Induced Pluripotent Stem Cells On Synthetic Substrate In Defined Medium, Huantong Yao

Graduate Theses and Dissertations

Human induced pluripotent stem cells (hiPSCs) have the potential to generate patient-specific cells to treat many incurable diseases by cell replacement therapy. However, so far the culture of hiPSCs depends greatly on feeder cells or Matrigel which has safety issues. Thus, chemically defined substrates that could provide niches necessary for cell attachment and proliferation are preferred for clinical application of hiPSCs. Recently, Corning Life Sciences has developed synthetic peptide-functionalized cell culture surface, referred to as Corning® Synthemax that support self-renewal and differentiation of human embryonic stem cell (hESC). In this work, we have collaborated with Corning to investigate the attachment, …

Response Of Broiler Chickens To Variation In Dietary Nutrient Content, Sarah Diane Goodgame

Graduate Theses and Dissertations

Rising feed costs, environmental pollution concerns targeted at animal agriculture, a worldwide focus on sustainability and the never ending battle to improve production and efficiency within the poultry industry challenges nutritionists to focus on products to improve nutrient digestibility and decrease feed costs while at the same time maximizing performance. The research presented in this dissertation focuses on improving nutrient utilization of protein sources with protein liberating enzymes currently available commercially. The research also conducted addresses the addition of crystalline amino acids valine and isoleucine and their effect on improving efficiency of broilers.

The first research project compared the efficacy …

Predictability Of Food And Wine Pairing Using A Sensory Approach, Rebeckah L. Koone

Graduate Theses and Dissertations

The purpose of this study was to explore significant differences in perception of match for a variety of food and wine styles; evaluate the impacts of wine sweetness level, wine acidity level, and wine tannin level on perception of match; and to investigate the impact of food and wine expertise on perceived level of match. A field research design was used to explore expert recommendations of food and wine combinations to obtain broader feedback on consumer perceptions. The population consisted of a convenience sample of 248 students enrolled in a continuing education course in food and wine pairing at George …

Effect Of Body Size And Exercise On Mood State, Alexandra Lachance

Graduate Theses and Dissertations

Exercising in the presence of nature (i.e., "green exercise"), has been shown to heighten the physiological and mental benefits of traditional exercise on non-obese individuals. The effects of green exercise on obese individuals are unknown. It is hypothesized that green exercise is more beneficial for obese (greater positive improvements in mental health scores), compared to non-obese individuals. For example, the benefits of green exercise could help lower feelings of depression, improve mood and self-esteem to increase the propensity of obese individuals to meet exercise recommendations. Accordingly, this study investigated the physiological and psychological effects of green exercise on 12 obese …

Meta-Analysis Of Wheat Qtl Regions Associated With Heat And Drought Stress, Marlovi Andrea Acuna Galindo

Graduate Theses and Dissertations

Heat and drought are the two most important environmental constraints to wheat production globally, are often present simultaneously and will become more severe with global climate change. This presents a unique challenge to wheat scientists who must work to develop wheat cultivars that are productive and adapted to future environmental conditions. A number of recent studies have reported quantitative trait loci (QTL) associated with heat and drought tolerance, as well as QTL for stress adaptive traits such as the availability of stem carbohydrates or crop canopy temperature. The objective of this study was to perform a meta-analysis of these QTL …

Evaluation Of The Recombination Efficiencies Of Flp Proteins, Linh Duy Nguyen

Graduate Theses and Dissertations

Site-specific recombination systems are powerful tools for genetic modification. They have been used to integrate a transgene into a pre-defined locus and to remove marker genes from a transgene locus. Two of the most widely used site-specific recombination systems in plants are the Cre/lox system from the bacteriophage P1 and the FLP/FRT system from the yeast Saccharomyces cerevisiae. The Cre/lox system is well-characterized and is the first choice in application of site-specific recombination system. However, some applications such as marker-free site-specific gene integration require the use of two recombination systems. In addition, the availability of alternative recombination systems can offer …

Long-Term Effects Of Rice Rotation, Tillage, And Fertility On Near-Surface Soil Carbon And Nitrogen Cycling, Jill Marie Motschenbacher

Graduate Theses and Dissertations

Rice (Oryza sativa L.)-based cropping systems are different from other row crops due to the flood-irrigation scheme used from about one month after planting to a few weeks prior to harvest. The frequent cycling between anaerobic (i.e., flooding during the growing season) and aerobic (i.e., generally, the remainder of the year) conditions can influence the rate of soil organic matter (SOM) decomposition, which can greatly influence carbon (C) and nitrogen (N) storage and sequestration in the soil over time. Therefore, a study was conducted on a silt-loam soil (fine, smectitic, thermic, Typic Albaqualf) at the Rice Research and Extension Center …

Documentation And Control Of Acetolactate Synthase-Resistant Barnyardgrass (Echinochloa Crus-Galli) In Arkansas Rice, Michael Joshua Wilson

Graduate Theses and Dissertations

Barnyardgrass, the most problematic grass weed of Arkansas rice, was found resistant to propanil in 1990, and since then, it has evolved resistance to quinclorac and clomazone. Barnyardgrass is now believed to have evolved resistance to acetolactate synthase (ALS)-inhibiting herbicides. The goal of this research was to confirm and determine the level of resistance of the putative resistant biotype to the ALS-inhibiting herbicides imazethapyr, bispyribac, and penoxsulam and to develop herbicide programs for controlling ALS-, propanil-, quinclorac-, and clomazone-resistant barnyardgrass. The lethal dose needed to kill 50% of the putative ALS-resistant plants was higher than that of the susceptible biotype …

Effects Of Obesity On Thermoregulation And Cardiovascular Function During Exercise In Females, Jon David Adams

Graduate Theses and Dissertations

Previous research has shown that obese individuals are at greater risk for heat illnesses because of impaired thermoregulation. However, laboratory studies investigating cardiovascular and thermoregulatory function in obese individuals are difficult to interpret because of low sample sizes and methodological concerns. The purpose of this study was to determine if there are differences in thermoregulatory and cardiovascular function between obese and non-obese females. Twenty-four females, 13 obese (43.3 ± 4 .3 % fat, 77.2 ± 13.7 kg) and 11 non-obese (27.8 ± 6.0 % fat, 55.7±6.7 kg), cycled for 60 min in a warm environment (~40°C, 30% humidity) at a …

Breeding For Modified Seed Composition In Soybean: Selection Of Genotypes, Yield Stability, And Environmental Effects, Luciano Miguel Jaureguy

Graduate Theses and Dissertations

The development of cultivars with modified seed composition represents an excellent alternative to cope with the world's need for more nutritious food. Understanding the genetic and environmental factors controlling crop seed quality traits is of crucial importance for such an endeavor. The objectives of this study were: a) to evaluate the efficiency of phenotype and marker-assisted selection for low stachyose and low phytate soybean breeding lines, and their yield stability, b) to study the effect of management practices planting date and delayed harvest on soybean seed composition, and c) to study the potential association between soil properties and leaf chemical …

Capillary And Microchip Electrophoresis For The Monitoring Of Disease Causing Amyloid Proteins, Elizabeth Nancy Pryor

Graduate Theses and Dissertations

The detection of oligomers and aggregates formed by two amyloid proteins, insulin and amyloid-beta (AB), is of particular importance due to the role which these species play in Diabetes and Alzheimer's disease, respectively. However, existing techniques are limited in the ability to detect insulin and AB; oligomers due to the fact that these early aggregates are transient, present at low concentrations, and difficult to isolate. Improvements must be made to existing techniques or alternative techniques must be explored in order to identify and quantify the size of these oligomeric and aggregate species without disrupting their structure.

Capillary and microchip electrophoresis …

Effects Of Felled Shortleaf Pine (Pinus Echinata Mill.) Moisture Loss On Oviposition Preferences And Survival Of Sirex Nigricornis F. (Hymenoptera: Siricidae), Jessica Hartshorn

Graduate Theses and Dissertations

The European woodwasp, Sirex noctilio F. (Hymenoptera: Siricidae) utilizes pine as its host during larval development. Females drill through pine bark to deposit eggs, a symbiotic fungus, Amylostereum, and phytotoxic mucus into the tree. In their native range, these insects are not viewed as primary pests because they attack dead or dying trees. Over the last century, this woodwasp has been accidentally introduced into several countries in the southern hemisphere. Some regions have incurred millions of dollars in damage to large plantations of the widely planted pine species, radiata pine (Pinus radiata D. Don). Sirex noctilio was discovered …

Influence Of Nutritional Modifications On Sow, Litter, And Nursery Performance, Benjamin Edward Bass

Graduate Theses and Dissertations

Two separate series of experiments were conducted to determine: 1) the influence of dietary arginine supplementation in late gestation on reproductive performance, and 2) the impact of a whole yeast product in gestation, lactation, and weaned pig diets on reproductive, growth, and immune parameters.

In the first study 99 sows were provided a control diet, or the control diet supplemented with 1% L-arginine from gestation d 93 to 110. Compared to control-fed sows, no differences were observed in reproductive parameters, however a tendency for increased gestational weight gain was observed for sows provided supplemental arginine.

In a second study, 98 …

The Impact Of Bovine Spongiform Encephalopathy (Bse) On World Protein Supply, Jarrod Kersey

Graduate Theses and Dissertations

As world population, per capita income and urbanization increase, consumption of meat, poultry, milk and eggs will continue to rise to meet the needs of approximately nine billion people in 2050. Global beef, pig and chicken production and per capita consumption increased between 2000 and 2010, with growth in broiler production and consumption outpacing both beef and swine. The increased production and consumption requires readily available feed ingredients in regions where animal production is rapidly developing. Animal-based protein feed ingredients are often difficult to move from country to country due to real or perceived risk of animal disease. Zoosanitary standards …

Alternative Herbicide Control Options For Glyphosate-Resistant Palmer Amaranth (Amaranthus Palmeri), George Macmillan Botha

Graduate Theses and Dissertations

The occurrence of glyphosate-resistant (GR) Palmer amaranth has prompted a shift in weed management strategies worldwide. Studies were conducted with the aim to (1) establish and compare the degree of tolerance of GR Palmer amaranth populations; (2) assess the efficacy of glufosinate, tembotrione, 2,4-D or dicamba, applied alone or tank-mixed, on Palmer amaranth with higher tolerance to glufosinate in the greenhouse and corn field, and (3) establish the mechanism involved in the tolerance of Palmer amaranth to glufosinate. Tembotrione, 2,4-D, dicamba, and glufosinate applied at 1x controlled 80 to 100%, 98 to 100%, 84 to 100%, and 94 to 100% …

Habitat Modeling Of Three Endemic Crayfish Species In The Black River Drainage Of Missouri And Arkansas: Factors Affecting Distribution And Abundance, Matthew Stephen Nolen

Graduate Theses and Dissertations

The Ozark faunal region of Missouri and Arkansas harbors a high level of aquatic biological diversity, especially in regards to endemic crayfish. Orconectes eupunctus, Orconectes marchandi, and Cambarus hubbsi are three such endemics that are threatened by a limited natural distribution and the invasions of Orconectes neglectus. I sought to determine how natural and anthropogenic factors influence these three species across multiple spatial scales. Local and landscape data were used in decision tree analyses (CART) to determine their influence effect on presence/absence and density of the three species. Predictive models were validated using k-fold cross validation. O. eupunctus presence was …