Life Sciences Commons^™

Use Of A Novel Oleaginous Microorganism As A Potential Source Of Lipids For Weanling Pigs, Jeffery A. Carroll, Ty B. Schmidt, T.R. Callaway, J.G. Wilson, Janet R. Donaldson

Faculty Publications

Weanling pigs are at risk of succumbing to illness due to an immature immune system and insufficient supply of available energy at the time of weaning. This study was aimed at determining whether oleaginous bacteria could serve as a source of lipids to weanling pigs. Weanling pigs were provided a daily dose of 1×109 colony fomring unit (CFU) = kg−1 of the novel oleaginous Enterobacter cloacae strain JD6301 or JD8715 (which is a variant form of JD6301 capable of producing extracellular triglycerides) via oral gavage for 5 d. Serum was collected every 6 h and intestinal samples were collected at …

Neuroscience Changes More Than You Can Think, Paul S. Davies, Peter A. Alces

Faculty Publications

In this Essay, we consider the contribution of a startling new book, Law & Neuroscience (L&N), by Owen Jones, Jeffrey Schall, and Francis Shen. It is a law school course book (a genre not often the focus of a scholarly review essay) that supports fundamental inquiry into the relationship between emerging neuroscientific insights and doctrinal conceptions in the law. We believe that the book shifts the paradigm and so may profoundly affect the course of normative evaluation of law. In this Essay, we trace and evaluate the “argument” of the book and suggest ways in which its contribution to the …

Relationships Between Root Pathogen Resistance, Abundance And Expression Of Pseudomonas Antimicrobial Genes, And Soil Properties In Representative Swiss Agricultural Soils, Nicola Imperiali, Francesca Dennert, Jana Schneider, Titouan Laessle, Christelle Velatta, Marie Fesselet, Michele Wyler, Fabio Mascher, Olga Mavrodi, Dmitri Mavrodi, Monika Maurhofer, Christoph Keel

Faculty Publications

Strains of Pseudomonas that produce antimicrobial metabolites and control soilborne plant diseases have often been isolated from soils defined as disease-suppressive, i.e., soils, in which specific plant pathogens are present, but plants show no or reduced disease symptoms. Moreover, it is assumed that pseudomonads producing antimicrobial compounds such as 2,4-diacetylphloroglucinol (DAPG) or phenazines (PHZ) contribute to the specific disease resistance of suppressive soils. However, pseudomonads producing antimicrobial metabolites are also present in soils that are conducive to disease. Currently, it is still unknown whether and to which extent the abundance of antimicrobials-producing pseudomonads is related to the general disease resistance …

Hierarchical Corannulene-Based Materials: Energy Transfer And Solid-State Photophysics, Allison M. Rice, W. Brett Fellows, Ekaterina A. Dolgopolova, Andrew B. Greytak, Aaron K. Vannucci, Mark D. Smith, Stavros G. Karakalos, Jeanette A. Krause, Stanislav M. Avdoshenko, Alexey A. Popov, Natalia B. Shustova Prof. Dr.

Faculty Publications

We report the first example of a donor–acceptor corannulene-containing hybrid material with rapid ligand-to-ligand energy transfer (ET). Additionally, we provide the first time-resolved photoluminescence (PL) data for any corannulene-based compounds in the solid state. Comprehensive analysis of PL data in combination with theoretical calculations of donor–acceptor exciton coupling was employed to estimate ET rate and efficiency in the prepared material. The ligand-to-ligand ET rate calculated using two models is comparable with that observed in fullerene-containing materials, which are generally considered for molecular electronics development. Thus, the presented studies not only demonstrate the possibility of merging the intrinsic properties of π-bowls, …

Data-Driven Identification Of Potential Zika Virus Vectors, Michelle V. Evans, Tad Dallas, Barbara A. Han, Courtney C. Murdock, John M. Drake

Faculty Publications

Zika is an emerging virus whose rapid spread is of great public health concern. Knowledge about transmission remains incomplete, especially concerning potential transmission in geographic areas in which it has not yet been introduced. To identify unknown vectors of Zika, we developed a data-driven model linking vector species and the Zika virus via vector-virus trait combinations that confer a propensity toward associations in an ecological network connecting flaviviruses and their mosquito vectors. Our model predicts that thirty-five species may be able to transmit the virus, seven of which are found in the continental United States, including Culex quinquefasciatus and Cx. …

Vegetative Comunitiy Development Over 30 Years Within Pine Plantations On Reclaimed Mine Land In East Texas., Christy Christian, Brian P. Oswald, Hans M. Williams, Kenneth W. Farrish

Faculty Publications

No abstract provided.

Reliability Of Pulse Waveform Separation Analysis: Effects Of Posture And Fasting, Lee Stoner, Daniel Credeur, Simon Fryer, James Faulkner, Danielle Lambrick, Bathany Barone Gibbs

Faculty Publications

Objective: Oscillometric pulse wave analysis devices enable, with relative simplicity and objectivity, the measurement of central hemodynamic parameters. The important parameters are central blood pressures and indices of arterial wave reflection, including wave separation analysis (backward pressure component P_b and reflection magnitude). This study sought to determine whether the measurement precision (between-day reliability) of P_b and reflection magnitude: exceeds the criterion for acceptable reliability; and is affected by posture (supine, seated) and fasting state.

Methods: Twenty healthy adults (50% female, 27.9 years, 24.2 kg/m²) were tested on six different mornings: 3 days fasted, 3 …

Effects Of Smartphone Texting On The Visual Perception And Dynamic Walking Stability, Jongil Lim, Seung Ho Chang, Jihyun Lee, Kijeong Kim

Faculty Publications

Mobile phone use while walking can cause dual-task interference and increases safety risks by increasing attentional and cognitive demands. While the interference effect on cognitive function has been examined extensively, how perception of the environment and walking dynamics are affected by mobile phone use while walking is not well understood. The amount of visual information loss and its consequent impact on dynamic walking stability was examined in this study. Young adults (mean, 20.3 years) volunteered and walked on a treadmill while texting and attending to visual tasks simultaneously. Performance of visual task, field of regard loss, and margin of stability …

The Molecular Basis For The Lack Of Inflammatory Responses In Mouse Embryonic Stem Cells And Their Differentiated Cells, William D'Angelo, Chandan Gurung, Dhiraj Acharya, Natalya Ortolano, Fengwei Bai, Yan-Lin Guo

Faculty Publications

We reported previously that mouse embryonic stem cells do not have a functional IFN-based antiviral mechanism. The current study extends our investigation to the inflammatory response in mouse embryonic stem cells and mouse embryonic stem cell–differentiated cells. We demonstrate that LPS, TNF-α, and viral infection, all of which induce robust inflammatory responses in naturally differentiated cells, failed to activate NF-κB, the key transcription factor that mediates inflammatory responses, and were unable to induce the expression of inflammatory genes in mouse embryonic stem cells. Similar results were obtained in human embryonic stem cells. In addition to the inactive state of NF-κB, …

Small Grants Make A Big Difference, Susan Walsh

Faculty Publications

No abstract provided.

Naturally-Occurring Changes In Social-Cognitive Factors Modify Change In Physical Activity During Early Adolescence, Rod K. Dishman, Marsha Dowda, Kerry L. Mciver, Ruth P. Saunders, Russell R. Pate

Faculty Publications

Purpose

To determine whether naturally-occurring changes in children’s motives and beliefs are associated with the steep decline in physical activity observed from childhood to early adolescence.

Methods

Latent growth modeling was applied in longitudinal tests of social-cognitive influences, and their interactions, on physical activity in a large cohort of boys and girls evaluated annually between 5th and 7th grades.

Results

Measurement equivalence of motives and beliefs was confirmed between boys and girls. After adjustment for gender and maturity differences, physical activity declined less in children who reported the least decreases in self-efficacy for overcoming barriers to activity and perceived parental …

Repeated Hapten Exposure Induces Persistent Tactile Sensitivity In Mice Modeling Localized Provoked Vulvodynia, Tijana Martinov, Jasmine Landry, Hanna Mengistu, Jyothi Dhanwada, Charles J. Benck, Jacyln Kline, Beebie Boo, Linnea Swanson, Elena Tonc, Randy Daughters, Brian T. Fife, Devavani Chatterjea

Faculty Publications

BACKGROUND:
Vulvodynia is a remarkably prevalent chronic pain condition of unknown etiology. Epidemiologic studies associate the risk of vulvodynia with a history of atopic disease. We used an established model of hapten-driven contact hypersensitivity to investigate the underlying mechanisms of allergy-provoked prolonged sensitivity to pressure.

METHODS:
We sensitized female ND4 Swiss mice to the hapten oxazolone on their flanks, and subsequently challenged them four days later with oxazolone or vehicle for ten consecutive days on the labia. We evaluated labiar sensitivity to touch, local mast cell accumulation, and hyperinnervation after ten challenges.

RESULTS:
Oxazolone-challenged mice developed significant tactile sensitivity that …

Climate Warming Can Accelerate Carbon Fluxes Without Changing Soil Carbon Stocks, Susan E. Ziegler, Ronald Benner, Sharon A. Billings, Kate A. Edwards, Michael Philben, Xinbiao Zhu, Jerome Laganière

Faculty Publications

Climate warming enhances multiple ecosystem C fluxes, but the net impact of changing C fluxes on soil organic carbon (SOC) stocks over decadal to centennial time scales remains unclear. We investigated the effects of climate on C fluxes and soil C stocks using space-for-time substitution along a boreal forest climate gradient encompassing spatially replicated sites at each of three latitudes. All regions had similar SOC concentrations and stocks (5.6 to 6.7 kg C m−2). The three lowest latitude forests exhibited the highest productivity across the transect, with tree biomass:age ratios and litterfall rates 300 and 125% higher than those in …

Yeast Pro- And Paraprobiotics Have The Capability To Bind Pathogenic Bacteria Associated With Animal Disease, Gabriel A. Posadas, Paul R. Broadway, Justin A. Thornton, Jeffery A. Carroll, Amanda Lawrence, Jimmie R. Corley, Amber Thompson, Janet R. Donaldson

Faculty Publications

Live yeast probiotics and yeast cell wall components (paraprobiotics) may serve as an alternative to the use of antibiotics in prevention and treatment of infections caused by pathogenic bacteria. Probiotics and paraprobiotics can bind directly to pathogens, which limits binding of the pathogens to the intestinal cells and also facilitates removal from the host. However, knowledge of bacterial binding, specificity, and/or capability is limited with regard to probiotics or paraprobiotics. The goal of this study was to characterize the qualitative and quantitative nature of two Saccharomyces cerevisiae probiotics and three S. cerevisiae paraprobiotics to adhere to thirteen different pathogenic bacteria …

Deuterateer: A Tool For Quantifying Peptide Isotope Precision And Kinetic Proteomics, Bradley C. Naylor, Michael T. Porter, Elise Wilson, Adam Herring, Spencer Lofthouse, Austin Hannemann, Stephen R. Piccolo, Alan L. Rockwood, John C. Price

Faculty Publications

Motivation

Using mass spectrometry to measure the concentration and turnover of the individual proteins in a proteome, enables the calculation of individual synthesis and degradation rates for each protein. Software to analyze concentration is readily available, but software to analyze turnover is lacking. Data analysis workflows typically don’t access the full breadth of information about instrument precision and accuracy that is present in each peptide isotopic envelope measurement. This method utilizes both isotope distribution and changes in neutromer spacing, which benefits the analysis of both concentration and turnover.

Results

We have developed a data analysis tool, DeuteRater, to measure protein …

Seasonal Survival Of Adult Female Mottled Ducks, Jena A. Moon, David A. Haukos, Warren C. Conway

Faculty Publications

The mottled duck (Anas fulgivula) is a non‐migratory duck dependent on coastal habitats to meet all of its life cycle requirements in the Western Gulf Coast (WGC) of Texas and Louisiana, USA. This population of mottled ducks has experienced a moderate decline during the past 2 decades. Adult survival has been identified as an important factor influencing population demography. Previous work based on band‐recovery data has provided only annual estimates of survival. We assessed seasonal patterns of female mottled duck survival from 2009 to 2012 using individuals marked with satellite platform transmitter terminals (PTTs). We used temperature and …

Responses To Prescribed Fire At Big Thicket National Preserve, Texas, Usa, B. P. Oswald, D. M. Boensch, H. M. Williams, I-Kuai Hung

Faculty Publications

US Federal land managers have utilized hand ignited prescribed fire at Big Thicket National Preserve in efforts to restore the structure and diversity of the longleaf pine (Pinus palustris) forest. A fire ecology study was initiated by Rice University in the early 1990’s and the National Park Service has continued monitoring the plots. Ordination was applied to species abundance data to examine changes in vegetation communities from a variety of prescribed fire treatments and controls. The vegetation data was separated by size class to include overstory, small tree, large sapling and seedling data. Across the size classes and treatments, the …

Using Wireless Pedometers To Measure Children’S Physical Activity: How Reliable Is The Fitbit Zip?, Tingting Xu, Erik Jon Byker, Monica Rae Gonzales

Faculty Publications

The purpose of this study is to examine the reliability of wireless pedometers in measuring elementary school children’s physical activity. Activity measurement using a wireless pedometer Fitbit Zip^TM was compared to activity measurement using Yamax Digi-Walker^TM SW701 for a group of randomly selected 25 children in Grades 3, 4, and 5. Fitbit Zip^TM wireless pedometers were found to have an appropriate degree (Nunnally & Bernstein, 1994) of accuracy and reliability compared to the Yamax Digi-Walker^TM SW701 pedometer. The Fitbit Zip^TM wireless pedometer collected more step counts than the Yamax Digi-Walker^TM SW701 pedometer; however, the …

Seed Yield Prediction Models Of Four Common Moist-Soil Plant Species In Texas, Daniel P. Collins, Warren C. Conway, Corey D. Mason, Jeffrey W. Gunnels

Faculty Publications

Seed production by moist-soil plant species often varies within and among managed wetlands and on larger landscapes. Quantifying seed production of moist-soil plants can be used to evaluate wetland management strategies and estimate wetland energetic carrying capacity, specifically for waterfowl. In the past, direct estimation techniques were used, but due to excessive personnel and time costs, other indirect methods have been developed. Because indirect seed yield models do not exist for moist-soil plant species in east-central or coastal Texas, we developed direct and indirect methods to model seed production on regional managed wetlands. In September 2004 and 2005, we collected …

Utilization Of Pyrosequencing To Monitor The Microbiome Dynamics Of Probiotic Treated Poultry (Gallus Gallus Domesticus) During Downstream Poultry Processing, Vamsy Priya Guttala, Enrique G. Medrano, Joey Bray, Beatrice Clack

Faculty Publications

Antibiotic growth promoters that have been historically employed to control pathogens and increase the rate of animal development for human consumption are currently banned in many countries. Probiotics have been proposed as an alternative to control pathogenic bacteria. Traditional culture methods typically used to monitor probiotic effects on pathogens possess significant limitations such as a lack in sensitivity to detect fastidious and non-culturable bacteria, and are both time consuming and costly. Here, we tested next generation pyrosequencing technology as a streamline and economical method to monitor the effects of a probiotic on microbial communities in juvenile poultry (Gallus gallus …

Digital Preservation And Access Of Natural Resources Documents, David Kulhavy, R Philip Reynolds, Daniel Unger, Steven H. Bullard, Matthew W. Mcbroom

Faculty Publications

Digitization and preservation of natural resource documents were reviewed and the current status of digitization presented for a North American university. It is important to present the status of the digitation process for natural resources and to advocate for increased collections of digital material for ease of reference and exchange of information. Digital collections need to include both published documents and ancillary material for research projects and data for future use and interpretation. The methods in this paper can be applied to other natural resource collections increasing their use and distribution. The process of decision making for documents and their …

Mechanisms Of Chinese Tallow (Triadica Sebifera) Invasion And Their Management Implications – A Review, Lauren S. Pile, G. Geoff Wang, Jeremy P. Stovall, Evan Siemann, Gregory S. Wheeler, Christopher A. Gabler

Faculty Publications

Ecosystems are under increasing stress from environmental change, including invasion by non-native species that can disrupt ecological processes and functions. Chinese tallow [Triadica sebifera (L.) Small] is a highly invasive tree species in southeastern US forests, prairies, and wetlands, and effectively managing this invasive species is a significant challenge for scientists and land managers. In this review, we synthesize the literature on invasion ecology and management of Chinese tallow. Our review suggests that the invaded range of Chinese tallow is currently limited by dispersal in many areas and by low temperatures and low soil moisture, and by high soil …

A Comparison Of Tree Growth In Loblolly Pine (Pinus Taeda) Plantations And Silvopasture Settings In East Texas, B. P. Oswald, Y. Weng, K. W. Farrish, J. Grogan, W. Kruckeberg, T. Barton

Faculty Publications

A desire by landowners to diversify potential income sources has resulted in an increased interest in silvopasture. This intensive land management option allows for the production of timber, livestock and/or forage on the same land base. With traditional plantation systems featuring loblolly pine (Pinus taeda) common in the western gulf coast region of the southeastern United States, comparisons of tree growth are needed to justify the use of silvopasture. This study evaluated the height, diameter and volume growth 13 years post-establishment of loblolly pine in both silvopasture and plantation spacings on a single site in east Texas. Individual trees in …

Site Index Prediction For Willow And Cherrybark Oaks In East Texas Bottomland Forests, B. P. Oswald, Y. Weng, G. D. Kronrad

Faculty Publications

Estimating site quality for a specific tree species is an important tool in forest management. While intensively managed pine species are often the focus of site quality studies using site index, hardwood species found in bottomland hardwood sites are often lacking in quality growth prediction equations. Two valuable hardwood species, willow oak (Quercus phellos) and cherrybark oak (Q. pagoda), are of interest for forest managers of east Texas bottomland sites. The objective of this study was to develop site index prediction equations and curves for these two species. Using height and age data from 267 cherrybark oaks and 460 willow …

The Extinction And De-Extinction Of Species, Helena Siipi, Leonard Finkelman

Faculty Publications

In this paper, we discuss the following four alternative ways of understanding the outcomes of resurrection biology (also known as de-extinction). Implications of each of the ways are discussed with respect to concepts of species and extinction. (1) Replication: animals created by resurrection biology do not belong to the original species but are copies of it. The view is compatible with finality of extinction as well as with certain biological and ecological species concepts. (2) Re-creation: animals created are members of the original species but, despite their existence, the species remains extinct. The view is incompatible with all …

The Microbiome Of Neotropical Ticks Parasitizing On Passerine Migratory Birds, Khemraj Budachetri, Jaclyn Williams, Nabanita Mukherjee, Michael Sellers, Shahid Karim

Faculty Publications

Seasonal migration of passerine birds between temperate North America and tropical Central and South America is an ecological phenomenon. Migration of birds has been associated with the introduction of ectoparasites like ticks or tick-borne pathogens across the avian migration routes. In this study, the microbial diversity was determined in the ticks and bird DNA samples using 454 pyrosequencing of bacterial 16S rRNA gene. Tick DNA samples showed the dominance of genera Lactococcus, Francisella, Raoultella, Wolbachiaand Rickettsia across all the ticks, but birds DNA did not share common microbial diversity with ticks. Furthermore, “Candidatus Rickettsia amblyommii” …

Utilization Of Different Anti-Viral Mechanisms By Mammalian Embryonic Stem Cells And Differentiated Cells, Yan-Lin Guo

Faculty Publications

Embryonic stem cells (ESCs) have received tremendous attention because of their potential applications in regenerative medicine. Over the past two decades, intensive research has not only led to the generation of various types of cells from ESCs that can be potentially used for the treatment of human diseases but also led to the formation of new concepts and breakthroughs that have significantly impacted our understanding of basic cell biology and developmental biology. Recent studies have revealed that ESCs and other types of pluripotent cells do not have a functional interferon (IFN)-based anti-viral mechanism, challenging the idea that the IFN system …

Reproductive Strategy Of The Giant Electric Ray In The Southern Gulf Of California, María I. Burgos-Vázquez, Paola A. Mejía-Falla, Victor H. Cruz-Escalona, Nancy Brown-Peterson

Faculty Publications

The objective of the present study was to describe and characterize macroscopic and microscopic aspects of the reproductive biology of the Giant Electric Ray Narcine entemedor, a viviparous elasmobranch targeted by commercial fishers in Mexico. A total of 305 individual rays were captured (260 females, 45 males); all males were sexually mature. The median size at maturity for females was estimated to be 58.5 cm TL, the median size at pregnancy was 63.7 cm TL, and the median size at maternity was 66.2 cm TL. The range of ovarian follicles recorded per female was 1–69; the maximum ovarian fecundity of …

Reliability Of Doming And Toe Flexion Testing To Quantify Foot Muscle Strength, Sarah T. Ridge, J. William Myrer, Mark T. Olsen, Kevin Jurgensmeier, A. Wayne Johnson

Faculty Publications

Quantifying the strength of the intrinsic foot muscles has been a challenge for clinicians and researchers. The reliable measurement of this strength is important in order to assess weakness, which may contribute to a variety of functional issues in the foot and lower leg, including plantar fasciitis and hallux valgus. This study reports 3 novel methods for measuring foot strength – doming (previously unmeasured), hallux flexion, and flexion of the lesser toes.

Growth And Spawning Dynamics Of Southern Flounder In The North-Central Gulf Of Mexico, Morgan M. Corey, Robert T. Leaf, Nancy Brown-Peterson, Mark S. Peterson, Samuel D. Clardy, David Dippold

Faculty Publications

Southern Flounder Paralichthys lethostigma is the most commonly harvested flatfish in the north-central Gulf of Mexico (GOM), yet knowledge of this species’ growth and reproduction is limited for the Mississippi region. Given the offshore spawning migrations and likely mixing between state-managed units of the GOM Southern Flounder stock, small-scale environmental influences may constitute a major driver of life history dynamics during early life residency in nearshore estuaries. Therefore, estimates of local demographic characteristics are needed for effective fishery management. Here, we describe critical life history traits of Southern Flounder, including estimation of growth rates and maturity. The three-parameter von Bertalanffy …