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Faculty Publications

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Full-Text Articles in Life Sciences

Exposure Characterization Of Haloacetic Acids In Humans For Exposure And Risk Assessment Applications: An Exploratory Study, Shahid Parvez, Jeffrey L. Ashby, Susana Y. Kimura, Susan D. Richardson Feb 2019

Exposure Characterization Of Haloacetic Acids In Humans For Exposure And Risk Assessment Applications: An Exploratory Study, Shahid Parvez, Jeffrey L. Ashby, Susana Y. Kimura, Susan D. Richardson

Faculty Publications

Disinfected water is the major source of haloacetic acids (HAAs) in humans, but their inter- and intra-individual variability for exposure and risk assessment applications is under-researched. Thus, we measured HAAs in cross-sectional and longitudinal urine and water specimens from 17 individuals. Five regulated HAAs—mono-, di-, and trichloroacetic acid (MCAA, DCAA, and TCAA) and mono- and dibromoacetic acid (MBAA and DBAA)—and one unregulated HAA—bromochloroacetic acid (BCAA)—were measured. Urinary DCAA, MBAA, DBAA, and BCAA levels were always below the limits of detection (LOD). Measured levels and interindividual variability of urinary MCAA were higher than urinary TCAA. Longitudinal urinary specimens showed MCAA levels …


Retrieval Of Phytoplankton Pigments From Underway Spectrophotometry In The Fram Strait, Yangyang Liu, Emmanuel Boss, Alison Chase, Hongyan Xi, Xiaodong Zhang, Rüdiger Röttgers, Yanqun Pan, Astrid Bracher Feb 2019

Retrieval Of Phytoplankton Pigments From Underway Spectrophotometry In The Fram Strait, Yangyang Liu, Emmanuel Boss, Alison Chase, Hongyan Xi, Xiaodong Zhang, Rüdiger Röttgers, Yanqun Pan, Astrid Bracher

Faculty Publications

Phytoplankton in the ocean are extremely diverse. The abundance of various intracellular pigments are often used to study phytoplankton physiology and ecology, and identify and quantify different phytoplankton groups. In this study, phytoplankton absorption spectra (αph(λ)) derived from underway flow-through AC-S measurements in the Fram Strait are combined with phytoplankton pigment measurements analyzed by high-performance liquid chromatography (HPLC) to evaluate the retrieval of various pigment concentrations at high spatial resolution. The performances of two approaches, Gaussian decomposition and the matrix inversion technique are investigated and compared. Our study is the first to apply the matrix inversion …


Vegetation Phenology And Nest Survival: Diagnosing Heterogeneous Effects Through Time, Kevin M. Ringelman Feb 2019

Vegetation Phenology And Nest Survival: Diagnosing Heterogeneous Effects Through Time, Kevin M. Ringelman

Faculty Publications

bias; duck; grassland; mallard; prairie; Robel; waterfowl; WATERFOWL PRODUCTION; HABITAT SELECTION; ARTIFICIAL NESTS; MOTTLED DUCKS; WINTER-WHEAT; SUCCESS; NORTH; PREDATION; CONCEALMENT; FIELDS


Deepdrug3d: Classification Of Ligand-Binding Pockets In Proteins With A Convolutional Neural Network, Michal Brylinski, Limeng Pu, Rajiv Gandhi Govindaraj, Jeffrey Mitchell Lemoine Feb 2019

Deepdrug3d: Classification Of Ligand-Binding Pockets In Proteins With A Convolutional Neural Network, Michal Brylinski, Limeng Pu, Rajiv Gandhi Govindaraj, Jeffrey Mitchell Lemoine

Faculty Publications

Comprehensive characterization of ligand-binding sites is invaluable to infer molecular functions of hypothetical proteins, trace evolutionary relationships between proteins, engineer enzymes to achieve a desired substrate specificity, and develop drugs with improved selectivity profiles. These research efforts pose significant challenges owing to the fact that similar pockets are commonly observed across different folds, leading to the high degree of promiscuity of ligand-protein interactions at the system-level. On that account, novel algorithms to accurately classify binding sites are needed. Deep learning is attracting a significant attention due to its successful applications in a wide range of disciplines. In this communication, we …


Host Sex, Size, And Hemoparasite Infection Influence The Effects Of Ectoparasitic Burdens On Free-Ranging Iguanas, Christine Lattin Feb 2019

Host Sex, Size, And Hemoparasite Infection Influence The Effects Of Ectoparasitic Burdens On Free-Ranging Iguanas, Christine Lattin

Faculty Publications

Investigations focusing on host-ectoparasite interactions in animals have revealed asymptomatic to severe health and fitness consequences suggesting that species mobilize different interspecific response mechanisms. Fewer studies, however, have examined intraspecific responses to ectoparasitic burdens. In this study, we analyzed host health and fitness responses to increasing ectoparasite burdens along with the presence/absence of hemoparasites of free-ranging insular rock iguanas (Cyclura cychlura) in The Bahamas. Using hematology, plasma biochemistry, as well as body condition and growth rate comparisons, we failed to find significant associations of tick burdens with annual growth rate, corticosterone, packed cell volume, total white blood cell, and heterophil, …


Predator-Prey Dynamics Of Bald Eagles And Glaucous-Winged Gulls At Protection Island, Washington, Usa, Shandelle M. Henson, Robert A. Desharnais, Eric T. Funasaki, Joseph G. Galusha, James W. Watson, James L. Hayward Feb 2019

Predator-Prey Dynamics Of Bald Eagles And Glaucous-Winged Gulls At Protection Island, Washington, Usa, Shandelle M. Henson, Robert A. Desharnais, Eric T. Funasaki, Joseph G. Galusha, James W. Watson, James L. Hayward

Faculty Publications

1. Bald eagle (Haliaeetus leucocephalus) populations in North America rebounded in the latter part of the twentieth century, the result of tightened protection and outlawing of pesticides such as DDT. An unintended consequence of recovery may be a negative impact on seabirds. During the 1980s, few bald eagles disturbed a large glaucous‐winged gull (Larus glaucescens) colony on Protection Island, Washington, USA, in the Salish Sea. Breeding gull numbers in this colony rose nearly 50% during the 1980s and early 1990s. Beginning in the 1990s, a dramatic increase in bald eagle activity ensued within the colony, after which began a significant …


Exposure To Environmental Radionuclides Associates With Tissue-Specific Impacts On Telomerase Expression And Telomere Length, Jenni Kesaniemi, Anton Lavrinienko, Eugene Tukalenko, Zbyszek Boratynski, Kati Kivisaari, Tapio Mappes, Gennadi Milinevsky, Anders Pape Moller, Timothy A. Mousseau, Phillip C. Watts Jan 2019

Exposure To Environmental Radionuclides Associates With Tissue-Specific Impacts On Telomerase Expression And Telomere Length, Jenni Kesaniemi, Anton Lavrinienko, Eugene Tukalenko, Zbyszek Boratynski, Kati Kivisaari, Tapio Mappes, Gennadi Milinevsky, Anders Pape Moller, Timothy A. Mousseau, Phillip C. Watts

Faculty Publications

Telomeres, the protective structures at the ends of chromosomes, can be shortened when individuals are exposed to stress. In some species, the enzyme telomerase is expressed in adult somatic tissues, and potentially protects or lengthens telomeres. Telomeres can be damaged by ionizing radiation and oxidative stress, although the effect of chronic exposure to elevated levels of radiation on telomere maintenance is unknown for natural populations. We quantified telomerase expression and telomere length (TL) in different tissues of the bank vole Myodes glareolus, collected from the Chernobyl Exclusion Zone, an environment heterogeneously contaminated with radionuclides, and from uncontaminated control sites …


Potential New Biomarkers For Endometrial Cancer, Michelle H. Townsend, Zac E. Ence, Abigail M. Felsted, Alyssa C. Parker, Stephen R. Piccolo, Richard A. Robison, Kim L. O'Neill Jan 2019

Potential New Biomarkers For Endometrial Cancer, Michelle H. Townsend, Zac E. Ence, Abigail M. Felsted, Alyssa C. Parker, Stephen R. Piccolo, Richard A. Robison, Kim L. O'Neill

Faculty Publications

Abstract

Background: Incidence of endometrial cancer are rising both in the United States and worldwide. As endometrial cancer becomes more prominent, the need to develop and characterize biomarkers for early stage diagnosis and the treatment of endometrial cancer has become an important priority. Several biomarkers currently used to diagnose endometrial cancer are directly related to obesity. Although epigenetic and mutational biomarkers have been identified and have resulted in treatment options for patients with specific aberrations, many tumors do not harbor those specific aberrations. A promising alternative is to determine biomarkers based on differential gene expression, which can be used to …


Dietary Intake Reporting Accuracy Of The Bridge2u Mobile Application Food Log Compared To Control Meal And Dietary Recall Methods, Jennifer Lemacks, Kristen Adams, Ashley Lovetere Jan 2019

Dietary Intake Reporting Accuracy Of The Bridge2u Mobile Application Food Log Compared To Control Meal And Dietary Recall Methods, Jennifer Lemacks, Kristen Adams, Ashley Lovetere

Faculty Publications

Mobile technology introduces opportunity for new methods of dietary assessment. The purpose of this study was to compare the reporting accuracy of a mobile food log application and 24 h recall method to a controlled meal among a convenience sample of adults (18 years of age or older). Participants were recruited from a community/university convenience sample. Participants consumed a pre-portioned control meal, completed mobile food log entry (mfood log), and participated in a dietary recall administered by a registered dietitian (24R). Height, weight, and application use survey data were collected. Sign test, Pearson’s correlation, and descriptive analyses were conducted to …


Effects Of Substrate On Movement Patterns And Behavior Of Stream Fish Through Culverts: An Experimental Approach, Kyla Johnson, Lindsay E. Wait, Suzanne K. Monk, Russell Rader, Rollin H. Hotchkiss, Mark C. Belk Jan 2019

Effects Of Substrate On Movement Patterns And Behavior Of Stream Fish Through Culverts: An Experimental Approach, Kyla Johnson, Lindsay E. Wait, Suzanne K. Monk, Russell Rader, Rollin H. Hotchkiss, Mark C. Belk

Faculty Publications

Culverts can provide a significant barrier to fish passage by fragmenting fish habitats and impeding the passage success of small-bodied fish. Geographical connectivity is critical to the maintenance of diverse fish assemblages. Culverts with high cross-sectional velocity can cause population fragmentation by impeding passage of small, freshwater fish. Behavioral responses of small fish to high velocities can differ among functional groups, and swimming behavior of many species is not well known. We tested effects of substrate type on swimming behavior in two small, freshwater fish species—southern leatherside chub (Lepidomeda aliciae, a midwater species), and longnose dace (Rhinichthys …


A Scientific Name For Pacific Oysters, Brian Bayne, Marc Anglès D'Auriac, Thierry Backeljau, Peter Beninger, Pierre Boudry, Ryan B. Carnegie, Jonathan P. Davis, Ximing Guo, Dennis Hedgecock, Maureen Krause, Chris Langdon, Sylvie Lapègue, Donal Manahan, Roger Mann, Eric Powell, Sandra Shumway Jan 2019

A Scientific Name For Pacific Oysters, Brian Bayne, Marc Anglès D'Auriac, Thierry Backeljau, Peter Beninger, Pierre Boudry, Ryan B. Carnegie, Jonathan P. Davis, Ximing Guo, Dennis Hedgecock, Maureen Krause, Chris Langdon, Sylvie Lapègue, Donal Manahan, Roger Mann, Eric Powell, Sandra Shumway

Faculty Publications

No abstract provided.


Global Patterns And Drivers Of Ecosystem Functioning In Rivers And Riparian Zones, Scott D. Tiegs, David M. Costello, Mark W. Isken, Guy Woodward, Peter B. Mcintyre, Mark O. Gessner, Eric Chauvet, Natalie A. Griffiths, Alex S. Flecker, Vicenç Acuña, Ricardo Albariño, Daniel C. Allen, Cecilia Alonso, Patricio Andino, Clay Arango, Jukka Aroviita, Marcus V.M. Barbosa, Leon A. Barmuta, Denise A. Bruesewitz, Francis J. Burdon, Marcos Callisto, Cristina Canhoto, Krista A. Capps, Maria M. Castillo, Joanne Clapcott, Fanny Colas, Checo Checo Colón-Gaud, Julien Cornut, Verónica Crespo-Pérez, Wyatt F. Cross, Joseph M. Culp, Michael Danger, Olivier Dangles, Elvira De Eyto, Alison M. Derry, Veronica Díaz Villanueva, Michael M. Douglas, Arturo Elosegi, Andrea C. Encalada, Sally Entrekin, Rodrigo Espinosa, Diana Ethaiya, Verónica Ferreira, Carmen Ferriol, Kyla M. Flanagan, Tadeusz Fleituch, Jennifer J. Follstad Shah, André Frainer, Nikolai Friberg, Paul C. Frost, Erica A. Garcia, Liliana García Lago, Pavel Ernesto García Soto, Sudeep Ghate, Darren P. Giling, Alan Gilmer, José Franciso Gonçalves Jr., Rosario Karina Gonzales, Manuel A.S. Graça, Mike Grace, Hans-Peter Grossart, François Guérold, Vlad Gulis, Luiz U. Hepp, Scott Higgins, Takuo Hishi, Joseph Huddart, John Hudson, Samantha Imberger, Carlos Iñiguez-Armijos, Tomoya Iwata, David J. Janetski, Eleanor Jennings, Andrea E. Kirkwood, Aaron A. Koning, Sarian Kosten, Kevin A. Kuehn, Hjalmar Laudon, Peter R. Leavitt, Aurea L. Lemes Da Silva, Shawn G. Leroux, Carri J. Leroy, Peter J. Lisi, Richard Mackenzie, Amy M. Marcarelli, Frank O. Masese, Brendan G. Mckie, Adriana Oliveira Medeiros, Kristian Meissner, Marko Miliša, Shailendra Mishra, Yo Miyake, Ashley Moerke, Shorok Mombrikotb, Rob Mooney, Tim Moulton, Timo Muotka, Junjiro N. Negishi, Vinicius Neres-Lima, Mika L. Nieminen, Jorge Nimptsch, Jakub Ondruch, Riku Paavola, Isabel Pardo, Christopher J. Patrick, Edwin T.H.M. Peeters, Jesus Pozo, Catherine Pringle, Aaron Prussian, Estefania Quenta, Antonio Quesada, Brian Reid, John S. Richardson, Anna Rigosi, José Rincón, Geta Rîșnoveanu, Christopher T. Robinson, Lorena Rodríguez-Gallego, Todd V. Royer, James A. Rusak, Anna C. Santamans, Géza B. Selmeczy, Gelas Simiyu, Agnija Skuja, Jerzy Smykla, Kandikere R. Sridhar, Ryan Sponseller, Aaron Stoler, Christopher M. Swan, David Szlag, Franco Teixera-De Mello, Jonathan D. Tonkin, Sari Uusheimo, Allison M. Veach, Sirje Vilbaste, Lena B.M. Vought, Chiao-Ping Wang, Jackon R. Webster, Paul B. Wilson, Stefan Woelfl, Marguerite A. Xenopolous, Adam G. Yates, Chihiro Yoshimura, Catherine M. Yule, Yixin X. Zhang, Jacob A. Zwart Jan 2019

Global Patterns And Drivers Of Ecosystem Functioning In Rivers And Riparian Zones, Scott D. Tiegs, David M. Costello, Mark W. Isken, Guy Woodward, Peter B. Mcintyre, Mark O. Gessner, Eric Chauvet, Natalie A. Griffiths, Alex S. Flecker, Vicenç Acuña, Ricardo Albariño, Daniel C. Allen, Cecilia Alonso, Patricio Andino, Clay Arango, Jukka Aroviita, Marcus V.M. Barbosa, Leon A. Barmuta, Denise A. Bruesewitz, Francis J. Burdon, Marcos Callisto, Cristina Canhoto, Krista A. Capps, Maria M. Castillo, Joanne Clapcott, Fanny Colas, Checo Checo Colón-Gaud, Julien Cornut, Verónica Crespo-Pérez, Wyatt F. Cross, Joseph M. Culp, Michael Danger, Olivier Dangles, Elvira De Eyto, Alison M. Derry, Veronica Díaz Villanueva, Michael M. Douglas, Arturo Elosegi, Andrea C. Encalada, Sally Entrekin, Rodrigo Espinosa, Diana Ethaiya, Verónica Ferreira, Carmen Ferriol, Kyla M. Flanagan, Tadeusz Fleituch, Jennifer J. Follstad Shah, André Frainer, Nikolai Friberg, Paul C. Frost, Erica A. Garcia, Liliana García Lago, Pavel Ernesto García Soto, Sudeep Ghate, Darren P. Giling, Alan Gilmer, José Franciso Gonçalves Jr., Rosario Karina Gonzales, Manuel A.S. Graça, Mike Grace, Hans-Peter Grossart, François Guérold, Vlad Gulis, Luiz U. Hepp, Scott Higgins, Takuo Hishi, Joseph Huddart, John Hudson, Samantha Imberger, Carlos Iñiguez-Armijos, Tomoya Iwata, David J. Janetski, Eleanor Jennings, Andrea E. Kirkwood, Aaron A. Koning, Sarian Kosten, Kevin A. Kuehn, Hjalmar Laudon, Peter R. Leavitt, Aurea L. Lemes Da Silva, Shawn G. Leroux, Carri J. Leroy, Peter J. Lisi, Richard Mackenzie, Amy M. Marcarelli, Frank O. Masese, Brendan G. Mckie, Adriana Oliveira Medeiros, Kristian Meissner, Marko Miliša, Shailendra Mishra, Yo Miyake, Ashley Moerke, Shorok Mombrikotb, Rob Mooney, Tim Moulton, Timo Muotka, Junjiro N. Negishi, Vinicius Neres-Lima, Mika L. Nieminen, Jorge Nimptsch, Jakub Ondruch, Riku Paavola, Isabel Pardo, Christopher J. Patrick, Edwin T.H.M. Peeters, Jesus Pozo, Catherine Pringle, Aaron Prussian, Estefania Quenta, Antonio Quesada, Brian Reid, John S. Richardson, Anna Rigosi, José Rincón, Geta Rîșnoveanu, Christopher T. Robinson, Lorena Rodríguez-Gallego, Todd V. Royer, James A. Rusak, Anna C. Santamans, Géza B. Selmeczy, Gelas Simiyu, Agnija Skuja, Jerzy Smykla, Kandikere R. Sridhar, Ryan Sponseller, Aaron Stoler, Christopher M. Swan, David Szlag, Franco Teixera-De Mello, Jonathan D. Tonkin, Sari Uusheimo, Allison M. Veach, Sirje Vilbaste, Lena B.M. Vought, Chiao-Ping Wang, Jackon R. Webster, Paul B. Wilson, Stefan Woelfl, Marguerite A. Xenopolous, Adam G. Yates, Chihiro Yoshimura, Catherine M. Yule, Yixin X. Zhang, Jacob A. Zwart

Faculty Publications

River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to conduct a global-scale field experiment in greater than 1000 river and riparian sites. We found that Earth’s biomes have distinct carbon processing signatures. Slow processing is evident across latitudes, whereas rapid rates are restricted to lower latitudes. Both the mean rate and variability decline with latitude, suggesting temperature constraints …


Effectiveness Of Plant Species For Removing Atmospheric Ammonia, Marife B. Anunciado, Sheryll B. Jerez, Hans Williams, Joey Bray, Dean W. Coble, Rena Saito Jan 2019

Effectiveness Of Plant Species For Removing Atmospheric Ammonia, Marife B. Anunciado, Sheryll B. Jerez, Hans Williams, Joey Bray, Dean W. Coble, Rena Saito

Faculty Publications

Six plant species of Yaupon, Eastern red cedar, American holly, Arizona cypress, Arborvitae and Roughleaf dogwood were utilized to determine their effectiveness in the removal of atmospheric ammonia. All species were exposed to three ammonia levels (1, 5 and 10 ppm) in an environmental chamber. Foliar ammonia content was quantified using an enzymatic technique. The effects of exposure to ammonia on the physiological responses (e.g. photosynthetic activity, stomatal conductance, and transpiration rate) of plants in ambient condition were also determined using an open design photosynthetic gas exchange system. Foliar ammonia content was significantly different among the six plant species (p<0.0001) with Eastern red cedar exhibiting the highest content. The physiological responses differed significantly depending on the plant species and the ammonia treatment level. The photosynthetic response of plants to the presence of ammonia was mixed. At low exposure level, all species except Arborvitae had decreased photosynthetic activity, reducing by as much as 44.5% for Yaupon. At the highest concentration, however, Yaupon’s photosynthetic activity improved by about 10%. Exposure to ammonia caused increased stomatal conductance and transpiration rate on American holly and Arizona cypress, making them more susceptible to water loss.


Weed Control And Overstory Reduction Improve Survival And Growth Of Under‐Planted Oak And Hickory Seedlings, Luke B. Oliver, Jeremy Stovall, Chris E. Comer, Hans Williams, Matt E. Symmank Jan 2019

Weed Control And Overstory Reduction Improve Survival And Growth Of Under‐Planted Oak And Hickory Seedlings, Luke B. Oliver, Jeremy Stovall, Chris E. Comer, Hans Williams, Matt E. Symmank

Faculty Publications

Weed control and overstory reduction are important silvicultural treatments for improving survival and growth of under‐planted oak and hickory seedlings. Mast‐producing trees in the bottomland forests of the blackland prairie and Post Oak Savannah ecoregions of Texas have declined in abundance. Oaks and hickories have been replaced by more shade‐tolerant species, including green ash (Fraxinus pennsylvanica Marshall) and sugarberry (Celtis laevigata Willd.), which do not produce significant hard mast for priority wildlife species. A split‐plot experiment design was installed on three sites at Richland Creek Wildlife Management Area in Freestone County, Texas, studying the effects of canopy coverage …


Student Led Area Measurement Assessments Using Virtual Globes And Pictometry Web-Based Interface Within An Undergraduate Spatial Science Curriculum, David Kulhavy, I-Kuai Hung, Daniel Unger, Yanli Zhang Jan 2019

Student Led Area Measurement Assessments Using Virtual Globes And Pictometry Web-Based Interface Within An Undergraduate Spatial Science Curriculum, David Kulhavy, I-Kuai Hung, Daniel Unger, Yanli Zhang

Faculty Publications

The use of Virtual Globes and Pictometry continues to expand and develop in undergraduate spatial science education. Spatial science undergraduates measured the area of 30 rectangles on the earth’s surface and compared them to Pictometry hyperspectral imagery measurements within a web-based interface and the Google Earth interface compared to ArcGIS Explorer, Map Developers and ArcMap using the ArcMap 10.5.2 interface. An analysis of variance of the absolute mean area errors (p-value of 0.009271) concluded the accuracy of the five area measurements were statistically different at the 95% confidence interval. A Tukey pair-wise test found that the Pictometry and Google Earth …


Distribution Of Contaminants In The Environment And Wildlife Habitat Use: A Case Study With Lead And Waterfowl On The Upper Texas Coast, Brian Kearns, Stephen Mcdowell, Jena A. Moon, Elizabeth Rigby, Warren C. Conway, David A. Haukos Jan 2019

Distribution Of Contaminants In The Environment And Wildlife Habitat Use: A Case Study With Lead And Waterfowl On The Upper Texas Coast, Brian Kearns, Stephen Mcdowell, Jena A. Moon, Elizabeth Rigby, Warren C. Conway, David A. Haukos

Faculty Publications

The magnitude and distribution of lead contamination remain unknown in wetland systems. Anthropogenic deposition of lead may be contributing to negative population-level effects in waterfowl and other organisms that depend on dynamic wetland habitats, particularly if they are unable to detect and differentiate levels of environmental contamination by lead. Detection of lead and behavioral response to elevated lead levels by waterfowl is poorly understood, but necessary to characterize the risk of lead-contaminated habitats. We measured the relationship between lead contamination of wetland soils and habitat use by mottled ducks (Anas fulvigula) on the Upper Texas Coast, USA. Mottled …


A Validation Study Of A Noninvasive Lactate Threshold Device, Rebecca M. Mcmorries, Dustin P. Joubert, Eric J. Jones, Mark D. Faries Jan 2019

A Validation Study Of A Noninvasive Lactate Threshold Device, Rebecca M. Mcmorries, Dustin P. Joubert, Eric J. Jones, Mark D. Faries

Faculty Publications

International Journal of Exercise Science 12(2): 221-232, 2019. The lactate threshold is considered a key marker of endurance exercise performance and identification of this threshold is important in writing an exercise training program. Unfortunately, assessment of the lactate threshold has traditionally required venous or capillary blood samples and a specialized meter to assess blood lactate concentrations. Recently, a consumer grade, non-invasive device was developed to determine muscle oxygenation and estimate the lactate threshold. Purpose: The aim of this study was to assess the validity of a noninvasive lactate threshold device (NID) to determine lactate threshold heart rate (LTHR). Methods: Twenty-one …


Associations Between Residual Feed Intake And Apparent Nutrient Digestibility, In Vitro Methane-Producing Activity, And Volatile Fatty Acid Concentrations In Growing Beef Cattle, Jocelyn R. Johnson, Gordon E. Carstens, Wimberly K. Krueger, Phillip A. Lancaster, Erin G. Brown, Luis O. Tedeschi, Robin C. Anderson, Kristen A. Johnson, Arieh Brosh Jan 2019

Associations Between Residual Feed Intake And Apparent Nutrient Digestibility, In Vitro Methane-Producing Activity, And Volatile Fatty Acid Concentrations In Growing Beef Cattle, Jocelyn R. Johnson, Gordon E. Carstens, Wimberly K. Krueger, Phillip A. Lancaster, Erin G. Brown, Luis O. Tedeschi, Robin C. Anderson, Kristen A. Johnson, Arieh Brosh

Faculty Publications

The objectives of this study were to examine the relationship between residual feed intake (RFI) and DM and nutrient digestibility, in vitro methane production, and volatile fatty acid (VFA) concentrations in growing beef cattle. Residual feed intake was measured in growing Santa Gertrudis steers (Study 1; n = 57; initial BW = 291.1 ± 33.8 kg) and Brangus heifers (Study 2; n = 468; initial BW = 271.4 ± 26.1 kg) fed a high-roughage-based diet (ME = 2.1 Mcal/kg DM) for 70 d in a Calan-gate feeding barn. Animals were ranked by RFI based on performance and feed intake measured …


Diversity And Shifts Of The Bacterial Community Associated With Baikal Sponge Mass Mortalities, Sergei Belikov, Natalia Belkova, Tatiana Butina, Lubov Chernogor, Alexandra Martynova-Van Kley, Armen Nalian, Colin Rorex, Igor Khanaev, Olga Maikova, Sergey Feranchuk Jan 2019

Diversity And Shifts Of The Bacterial Community Associated With Baikal Sponge Mass Mortalities, Sergei Belikov, Natalia Belkova, Tatiana Butina, Lubov Chernogor, Alexandra Martynova-Van Kley, Armen Nalian, Colin Rorex, Igor Khanaev, Olga Maikova, Sergey Feranchuk

Faculty Publications

The disease of freshwater sponges was first discovered in 2011, when pink samples were found in the Central Basin of Lake Baikal. Subsequently, the visible signs of the disease have changed, and now sponges appear with various symptoms of damage to the body, such as discoloration, tissue necrosis, the formation of brown patches and dirty-purple biofilms on some branches. These signs of the disease are accompanied by the mass death of sponges. We identified differences in microbiomes by sequencing 16S rRNA genes and found changes in the consortium of microorganisms of freshwater Baikal sponges. We found that the observed imbalance …


Structural And Functional Determinants Of Rodent And Human Surfactant Protein A: A Synthesis Of Binding And Computational Data, Armen Nalian, Todd M. Umstead, Ching-Hui Yang, Patricia Silveyra, Neal J. Thomas, Joanna Floros, Francis X. Mccormack, Zissis C. Chroneos Jan 2019

Structural And Functional Determinants Of Rodent And Human Surfactant Protein A: A Synthesis Of Binding And Computational Data, Armen Nalian, Todd M. Umstead, Ching-Hui Yang, Patricia Silveyra, Neal J. Thomas, Joanna Floros, Francis X. Mccormack, Zissis C. Chroneos

Faculty Publications

Surfactant protein A (SP-A) provides surfactant stability, first line host defense, and lung homeostasis by binding surfactant phospholipids, pathogens, alveolar macrophages (AMs), and epithelial cells. Non-primates express one SP-A protein whereas humans express two: SP-A1 and SP-A2 with core intra- and inter-species differences in the collagen-like domain. Here, we used macrophages and solid phase binding assays to discern structural correlates of rat (r) and human (h) SP-A function. Binding assays using recombinant rSP-A expressed in insect cells showed that lack of proline hydroxylation, truncations of amino-terminal oligomerization domains, and site-directed serine (S) or alanine (A) mutagenesis of cysteine 6 (C6S), …


Whole Leaf Photosynthetic Light Response In A Carnivorous Plant Species Sarracenia Alata, K. A. Hopkins, Dennis A. Gravatt Jan 2019

Whole Leaf Photosynthetic Light Response In A Carnivorous Plant Species Sarracenia Alata, K. A. Hopkins, Dennis A. Gravatt

Faculty Publications

Photosynthetic light-response curves of mature leaves of Sarracenia alata were generated and characterized using a custom built chamber (2.79 L) capable of accommodating whole leaves, or pitchers, coupled to a LI-COR 6400XT Portable Photosynthesis System. In addition to generating light-response curves, chlorophyll content, leaf area, and dry mass measurements were obtained for each pitcher. Gas-exchange variables from the light-response curves are reported on a leaf area and dry mass basis. Calculated light-saturated photosynthesis was found to be 2.09 µmol(CO2) m-2 s-1 with a light-saturation point of 315.14 µmol(photon) m-2 s-1, light-compensation point of …


Arachidin-1 And Arachidin-3 Modulation Of Rotavirus-Infected Ma104 Cells, Caleb M. Witcher, Rebekah Napier-Jameson, Hannah N. Lockwood, Macie N. Mattila, Stormey B. Wisdom, Luanna L. Saade Ferreira, Josephine Taylor, Beatrice Clack, Fabricio Medina-Bolivar, Judith M. Ball, Rebecca D. Parr Jan 2019

Arachidin-1 And Arachidin-3 Modulation Of Rotavirus-Infected Ma104 Cells, Caleb M. Witcher, Rebekah Napier-Jameson, Hannah N. Lockwood, Macie N. Mattila, Stormey B. Wisdom, Luanna L. Saade Ferreira, Josephine Taylor, Beatrice Clack, Fabricio Medina-Bolivar, Judith M. Ball, Rebecca D. Parr

Faculty Publications

Rotavirus (RV) causes severe life-threatening diarrhea in young children and immunocompromised individuals. There are several licensed attenuated vaccines for young children, but there are no vaccines or antiviral therapeutics for immunocompromised patients of any age. Previously, our laboratory demonstrated that arachidin 1 (A1) and arachidin 3 (A3) decreases the number of infectious simian RV particles and RV non-structural protein 4 (NSP4) in a human intestinal cell line which suggests effects on RV replication. This study examined the effects of the arachidins on the human RV (Wa)-infected African green monkey kidney cell line, MA104. The addition of either A1 or A3 …


Move It Or Lose It: Interspecific Variation In Risk Response Of Pond-Breeding Anurans, Philip Matich, Christopher M. Schalk Jan 2019

Move It Or Lose It: Interspecific Variation In Risk Response Of Pond-Breeding Anurans, Philip Matich, Christopher M. Schalk

Faculty Publications

Changes in behavior are often the proximate response of animals to human disturbance, with variability in tolerance levels leading some species to exhibit striking shifts in life history, fitness, and/or survival. Thus, elucidating the effects of disturbance on animal behavior, and how this varies among taxonomically similar species with inherently different behaviors and life histories is of value for management and conservation. We evaluated the risk response of three anuran species—southern leopard frog (Lithobates sphenocephalus), Blanchard’s cricket frog (Acris blanchardi), and green tree frog (Hyla cinerea)—to determine how differences in microhabitat use (arboreal vs …


Positional Precision Analysis Of Orthomosaics Derived From Drone Captured Aerial Imagery, I-Kuai Hung, Daniel Unger, David Kulhavy, Yanli Zhang Jan 2019

Positional Precision Analysis Of Orthomosaics Derived From Drone Captured Aerial Imagery, I-Kuai Hung, Daniel Unger, David Kulhavy, Yanli Zhang

Faculty Publications

The advancement of drones has revolutionized the production of aerial imagery. Using a drone with its associated flight control and image processing applications, a high resolution orthorectified mosaic from multiple individual aerial images can be produced within just a few hours. However, the positional precision and accuracy of any orthomosaic produced should not be overlooked. In this project, we flew a DJI Phantom drone once a month over a seven-month period over Oak Grove Cemetery in Nacogdoches, Texas, USA resulting in seven orthomosaics of the same location. We identified 30 ground control points (GCPs) based on permanent features in the …


Correlates Of Snake Entanglement In Erosion Control Blankets, Sarah E. Ebert, Kasey L. Jobe, Christopher M. Schalk, Daniel Saenz, Cory K. Adams, Christopher E. Comer Jan 2019

Correlates Of Snake Entanglement In Erosion Control Blankets, Sarah E. Ebert, Kasey L. Jobe, Christopher M. Schalk, Daniel Saenz, Cory K. Adams, Christopher E. Comer

Faculty Publications

In road construction projects across the United States, erosion control methods (e.g., erosion control blankets [ECBs]), are mandated to stimulate seedbed regeneration and prevent soil loss. Previous reports have suggested that snakes are vulnerable to entanglement in ECBs. We conducted a literature review, field surveys, and an entanglement experiment to examine what factors increase a snake’s risk of ECB entanglement. Our literature review produced reports of 175 reptiles entangled in mesh products, 89.1% of which were snakes, with 43.6% of snake entanglements occurring in erosion control products. During our field surveys, we found 10 entangled snakes (n = 2 alive; …


Variation In Carbon Concentrations And Allocations Among Larix Olgensis Populations Growing In Three Field Environments, Jiang Ying, Yuhi Weng, Brian P. Oswald, Hanguo Zhang Jan 2019

Variation In Carbon Concentrations And Allocations Among Larix Olgensis Populations Growing In Three Field Environments, Jiang Ying, Yuhi Weng, Brian P. Oswald, Hanguo Zhang

Faculty Publications

Key message Variation in carbon concentration among Larix olgensis A. Henry provenances and tree tissues was significant, suggesting importance of such variation to carbon stock calculation. Provenance variation in carbon allocation was only significant in allocations to some tissues, including stem wood, and was strongly site-specific. Some allocation patterns correlated significantly with provenance growth and were related to geographic/climatic variables at the provenance origins.

Context Understanding variation in carbon concentrations and allocations to tree tissues among genetic entries is important for assessing carbon sequestration and understanding differential growth rates among the entries. However, this topic is poorly understood, in particular …


Temporal Changes In Fruit Production Between Recurrent Prescribed Burns In Pine Woodlands Of The Ouachita Mountains, Tamara B. Wood, Christopher E. Comer, Roger W. Perry, Brian P. Oswald Jan 2019

Temporal Changes In Fruit Production Between Recurrent Prescribed Burns In Pine Woodlands Of The Ouachita Mountains, Tamara B. Wood, Christopher E. Comer, Roger W. Perry, Brian P. Oswald

Faculty Publications

The use of prescribed fire is integral to the restoration of open woodlands and savannas, including shortleaf pine (Pinus echinata) woodlands in the Ouachita Mountains of Oklahoma and Arkansas. Fire offers many potential benefits to numerous wildlife; however, short-term implications for understory fruit production are not fully understood, especially in stands subjected to frequent, recurrent burns. We examined the effects of dormant season prescribed burns on woody fruit production (kg ha−1) and fruit producing vegetative cover in the understory of restored pine woodlands. We inventoried 32 stands during four temporal periods after dormant season prescribed fires: 1, 2, …


Individual Tree And Stand-Level Carbon And Nutrient Contents Across One Rotation Of Loblolly Pine Plantations On A Reclaimed Surface Mine, Hannah Z. Angel, Jeremy S. Priest, Jeremy P. Stovall, Brian P. Oswald, Hans M. Williams Jan 2019

Individual Tree And Stand-Level Carbon And Nutrient Contents Across One Rotation Of Loblolly Pine Plantations On A Reclaimed Surface Mine, Hannah Z. Angel, Jeremy S. Priest, Jeremy P. Stovall, Brian P. Oswald, Hans M. Williams

Faculty Publications

While reclaimed loblolly pine (Pinus taeda L.) plantations in east Texas, USA have demonstrated similar aboveground productivity levels relative to unmined forests, there is interest in assessing carbon (C) and nutrients in aboveground components of reclaimed trees. Numerous studies have previously documented aboveground biomass, C, and nutrient contents in loblolly pine plantations; however, similar data have not been collected on mined lands. We investigated C, N, P, K, Ca, and Mg aboveground contents for first-rotation loblolly pine growing on reclaimed mined lands in the Gulf Coastal Plain over a 32-year chronosequence and correlated elemental rates to stand age, stem …


Forest Measurements, Yuhi Weng Jan 2019

Forest Measurements, Yuhi Weng

Faculty Publications

Forest measurements, one of the cornerstones in the foundation of forestry, is the art and science of providing the quantitative information about trees and forest stands necessary for forest management, planning, and research. The updated edition (sixth edition) of this longstanding classic textbook, Forest Measurements, provides new and complete coverage of conventional and current measurement practices and technological applications that link the role of forest measurements with management of forest resources.


Resin Flow In Loblolly And Shortleaf Pines Used By Red-Cockaded Woodpeckers, David L. Kulhavy, W G. Ross, J H. Sun, Daniel Unger, I-Kuai Hung, Richard N. Conner Jan 2019

Resin Flow In Loblolly And Shortleaf Pines Used By Red-Cockaded Woodpeckers, David L. Kulhavy, W G. Ross, J H. Sun, Daniel Unger, I-Kuai Hung, Richard N. Conner

Faculty Publications

We measured resin flow in loblolly (Pinus taeda L.) and shortleaf (Pinus echinata Mill.) pines in stands used by red-cockaded woodpecker, Picoides borealis (Vieillot), in the Angelina and Davy Crockett National Forests in eastern Texas. We also measured resin flow in a mature loblolly pine stand not used by the woodpeckers. Resin flow varied by study area, species, and stand position. In woodpecker stands, pines experiencing low levels of competition seemed better able to tolerate the continual resin drainage associated with red-cockaded woodpecker resin well pecking. In the Angelina National Forest, all new cavity trees excavated during the study were …