Life Sciences Commons^™

Upregulation Of Mir21 And Repression Of Grhl3 By Leptin Mediates Sinusoidal Endothelial Injury In Experimental Nonalcoholic Steatohepatitis, Sahar Pourhoseini, Ratanesh K. Seth, Suvarthi Das, Diptadip Dattaroy, Maria B. Kadiiska, Guanhua Xie, Gregory A. Michelotti, Mitzi Nagarkatti, Anna Mae Diehl, Saurabh Chatterjee

Faculty Publications

Sinusoidal endothelial dysfunction (SED) has been found to be an early event in nonalcoholic steatohepatitis (NASH) progression but the molecular mechanisms underlying its causation remains elusive. We hypothesized that adipokine leptin worsens sinusoidal injury by decreasing functionally active nitric oxide synthase 3 (NOS)3 via miR21. Using rodent models of NASH, and transgenic mice lacking leptin and leptin receptor, results showed that hyperleptinemia caused a 4-5 fold upregulation of hepatic miR21 as assessed by qRTPCR. The upregulation of miR21 led to a time-dependent repression of its target protein Grhl3 levels as shown by western blot analyses. NOS3-p/NOS3 ratio which is controlled …

First Record Of The Invasive Asian Fish Tapeworm Bothriocephalus Acheilognathi In Honduras, Central America, Guillermo Salgado-Maldonado, Wilfredo A. Matamoros, Brian R. Kreiser, Juan Manuel Caspeta-Mandujano, Edgar F. Mendoza-Franco

Faculty Publications

This paper provides the first report of the invasive Asian fish tapeworm, Bothriocephalus acheilognathi Yamaguti, 1934, in Honduras. The cestode was found in Profundulus portillorum (Cyprinodontiformes: Profundulidae), which represents a new host record, and which is a member of a genus faced with a variety of conservation challenges, now potentially complicated by the presence of this pathogenic cestode. Nearly complete sequence data from the ITS-1 5.8S and ITS-2 regions corroborate the determination based on morphological characteristics. Several species of carp were introduced to Honduras for aquaculture purposes in the early 1980s and the presence of the Asian fish tapeworm in …

Seasonal And Interannual Oxygen Variability On The Washington And Oregon Continental Shelves, S. Siedlecki, N. Banas, K. Davis, S. Giddings, B. Hickey, P. Maccready, Thomas Connolly, S. Geier

Faculty Publications

The coastal waters of the northern portion of the California Current System experience a seasonal decline in oxygen concentrations and hypoxia over the summer upwelling season that results in negative impacts on habitat for many organisms. Using a regional model extending from 43°N to 50°N, with an oxygen component developed in this study, drivers of seasonal and regional oxygen variability are identified. The model includes two pools of detritus, which was an essential addition in order to achieve good agreement with the observations. The model was validated using an extensive array of hydrographic and moored observations. The model captures the …

Sex Differences In Whole Body Gait Kinematics At Preferred Speeds, Dustin A. Bruening, R. Frimenko, C. Goodyear, A. Fullenkamp

Faculty Publications

Studies on human perception have identified pelvis and torso motion as key discriminators between male and female gaits. However, while most observers would advocate that men and women walk differently, consistent findings and explanations of sex differences in gait kinematics across modern empirical studies are rare. In the present study we evaluated sex differences in whole body gait kinematics from a large sample of subjects (55 men, 36 women) walking at self selected speeds. We analyzed the data through comparisons of discrete metrics and whole curve analyses. Results showed that in the frontal plane, women walked with greater pelvic obliquity …

The Candidate Cancer Gene Database: A Database Of Cancer Driver Genes From Forward Genetic Screens In Mice, Kenneth L. Abbott, Erik T. Nyre, Juan Abrahante, Yen Yi Ho, Rachel Isaksson Vogel, Timothy K. Starr

Faculty Publications

Identification of cancer driver gene mutations is crucial for advancing cancer therapeutics. Due to the overwhelming number of passenger mutations in the human tumor genome, it is difficult to pinpoint causative driver genes. Using transposon mutagenesis in mice many laboratories have conducted forward genetic screens and identified thousands of candidate driver genes that are highly relevant to human cancer. Unfortunately, this information is difficult to access and utilize because it is scattered across multiple publications using different mouse genome builds and strength metrics. To improve access to these findings and facilitate metaanalyses, we developed the Candidate Cancer Gene Database (CCGD, …

Assign: Context-Specific Genomic Profiling Of Multiple Heterogeneous Biological Pathways, Ying Shen, Mumtahena Rahman, Stephen R. Piccolo, Daniel Gusenleitner, Nader N. El-Chaar, Luis Cheng, Stefano Monti, Andrea H. Bild, W. Evan Johnson

Faculty Publications

Motivation: Although gene-expression signature-based biomarkers are often developed for clinical diagnosis, many promising signatures fail to replicate during validation. One major challenge is that biological samples used to generate and validate the signature are often from heterogeneous biological contexts—controlled or in vitro samples may be used to generate the signature, but patient samples may be used for validation. In addition, systematic technical biases from multiple genome-profiling platforms often mask true biological variation. Addressing such challenges will enable us to better elucidate disease mechanisms and provide improved guidance for personalized therapeutics.

Results: Here, we present a pathway profiling toolkit, Adaptive Signature …

Dairy Consumption And Insulin Resistance: The Role Of Body Fat, Physical Activity, And Energy Intake, Larry A. Tucker, Andrea Erickson, James D. Lecheminant, Bruce W. Bailey

Faculty Publications

The relationship between dairy consumption and insulin resistance was ascertained in 272 middle-aged, nondiabetic women using a cross-sectional design. Participants kept 7-day, weighed food records to report their diets, including dairy intake. Insulin resistance was assessed using the homeostatic model assessment (HOMA). The Bod Pod was used to measure body fat percentage, and accelerometry for 7 days was used to objectively index physical activity. Regression analysis was used to determine the extent to which mean HOMA levels differed across low, moderate, and high dairy intake categories. Results showed that women in the highest quartile of dairy consumption had significantly greater …

Satrat: Staphylococcus Aureus Transcript Regulatory Network Analysis Tool, Tamilselvi Gopal, Vijayaraj Nagarajan, Mohamed O. Elasri

Faculty Publications

Staphylococcus aureus is a commensal organism that primarily colonizes the nose of healthy individuals. S. aureus causes a spectrum of infections that range from skin and soft-tissue infections to fatal invasive diseases. S. aureus uses a large number of virulence factors that are regulated in a coordinated fashion. The complex regulatory mechanisms have been investigated in numerous high-throughput experiments. Access to this data is critical to studying this pathogen. Previously, we developed a compilation of microarray experimental data to enable researchers to search, browse, compare, and contrast transcript profiles. We have substantially updated this database and have built a novel …

Effects Of Competing Vegetation On Growth Of Loblolly Pine Plantations In The West Gulf Coastal Plain, Dean W. Coble

Faculty Publications

No abstract provided.

Integrating Hands-On Undergraduate Research In An Applied Spatial Science Senior Level Capstone Course, David Kulhavy, Daniel Unger, I-Kuai Hung, David Douglass

Faculty Publications

A senior within a spatial science Ecological Planning capstone course designed an undergraduate research project to increase his spatial science expertise and to assess the hands-on instruction methodology employed within the Bachelor of Science in Spatial Science program at Stephen F Austin State University. The height of 30 building features estimated remotely with LiDAR data, within the Pictometry remotely sensed web-based interface, and in situ with a laser rangefinder were compared to actual building feature height measurements. A comparison of estimated height with actual height indicated that all three estimation techniques tested were unbiased estimators of height. An ANOVA, conducted …

Urban Tree Height Assessment Using Pictometry Hyperspatial 4-Inch Multispectral Imagery, Daniel Unger, David Kulhavy, Jeffrey M. Williams, David Creech, I-Kuai Hung

Faculty Publications

Tree height is a critical variable of forest inventory assessments, and estimating the height of trees has been a component of forest inventory assessments for decades. The actual tree height of 60 open-grown baldcypress (Taxodium distichum) trees measured with a telescopic height pole were compared to Pictometry hyperspatial 4-in. multispectral imagery estimated tree height on the campus of Stephen F. Austin State University, Nacogdoches, Texas. Linear correlation coefficients (r) between actual tree height and Pictometry-estimated tree height for all 60 trees and the shortest 30 and tallest 30 trees were [1]0.997 for all r values. Pictometry estimated tree …

The Relationship Of Female Physical Attractiveness To Body Fatness, Guanlin Wang, Kurosh Djafarian, Chima A. Egedigwe, Asmaa El Hamdouchi, Robert Ojiambo, Harris Ramuth, Sandra Johanna Wallner-Liebmann, Sonja Lackner, Adama Diouf, Justina Sauciuvenaite, Catherine Hambly, Lobke M. Vaanholt, Mark D. Faries, John R. Speakman

Faculty Publications

Aspects of the female body may be attractive because they signal evolutionary fitness. Greater body fatness might reflect greater potential to survive famines, but individuals carrying larger fat stores may have poor health and lower fertility in non-famine conditions. A mathematical statistical model using epidemiological data linking fatness to fitness traits, predicted a peaked relationship between fatness and attractiveness (maximum at body mass index (BMI) = 22.8 to 24.8 depending on ethnicity and assumptions). Participants from three Caucasian populations (Austria, Lithuania and the UK), three Asian populations (China, Iran and Mauritius) and four African populations (Kenya, Morocco, Nigeria and Senegal) …

Egg Intake And Dietary Quality Among Overweight And Obese Mexican-American Postpartum Women, Sonia Sonia Vega-López, Giselle Pignotti, Michael Todd, Colleen Keller

Faculty Publications

Despite their low cost and high nutrient density, the contribution of eggs to nutrient intake and dietary quality among Mexican-American postpartum women has not been evaluated. Nutrient intake and dietary quality, as assessed by the Healthy Eating Index 2010 (HEI-2010), were measured in habitually sedentary overweight/obese (body mass index (BMI) = 29.7 ± 3.5 kg/m2) Mexican-American postpartum women (28 ± 6 years) and compared between egg consumers (n = 82; any egg intake reported in at least one of three 24-h dietary recalls) and non-consumers (n = 57). Egg consumers had greater intake of energy (+808 kJ (193 kcal) or …

The Frequency Of Ticks Carrying Rickettsia Sp., Sarah C. Canterberry, Daniel J. Bennett, Robert J. Wiggers

Faculty Publications

No abstract provided.

Effects Of Urbanization On The Occurrence Of Batrachochytrium Dendrobatidis: Do Urban Environments Provide Refuge From The Amphibian Chytrid Fungus?, Daniel Saenz, Taylor L. Hall, Matthew Kwiatkowski

Faculty Publications

Batrachochytrium dendrobatidis (Bd) is a widespread pathogenic fungus that is known to cause the disease, chytridiomycosis, which can be lethal to many amphibians. We compared occurrence rates on spring peepers (Pseudacris crucifer) in urban and forested breeding sites in eastern Texas, USA. All study sites were at approximately the same latitude and altitude, and samples were collected at the same time of year to isolate differences in Bd infection rates between habitat types. We found significant differences (p<0.001) in the occurrence of Bd between habitats; with dramatically lower rates of occurrence at urban sites (19.5 %), compared to forested sites (62.9 …

Morphologic And Taxonomic Analysis Of The Weedy And Cultivated Amaranthus Hybridus Species Complex, Dinesh Adhikary, Donald B. Pratt

Faculty Publications

The hybridus species complex of the genus Amaranthus is a group of weedy and cultivated plants from the New World that are considered difficult to identify. Classification schemes have varied between a single species approach, Amaranthus hybridus s.l., and a five species approach that recognizes the widespread weedy A. hybridus s.s., the South American endemic A. quitensis, and the three cultivated taxa (A. hypochondriacus, A. cruentus, and A. caudatus) as distinct species. The goals of this study were to analyze patterns of floral variation within the species complex and to determine distinguishing morphological features of …

Evaluation Of The Performance Of A Rural Municipal Wastewater Treatment Plant In Nacogdoches, East Texas (Usa) (Abstract), Kefa Karimu Onchoke, Michael Janusa, Salomey Asantewaa Sasu

Faculty Publications

The performance of a rural wastewater treatment facility, Nacogdoches Wastewater Treatment Plant

(NWWTP), in East Texas, USA, was assessed from January 2013 through June 2014. The elemental concentrations (Na, Mg, Ca, Ni, Pb, Mn, Cr, Mo, and Cu, Al, As, B, Ba, Ag, Cd, Fe, Hg, K, Se, Zn, Co, P, and S) were measured using inductively coupled plasma optical emission spectrometry. The anion concentrations (Br−, NO3- , NO2- , PO34-,F−, Cl−, and SO24−) were measured by ion chromatography. In general, the NWWTP was found efficient in removal to ≥ 96% for metals. The removal efficiency for anions was in …

If It Pays, It Stays - Rewarding Private Forest Landowners, Steven H. Bullard

Faculty Publications

Article discusses monetizing the "ecosystem services" provided by private landowner forests. It discusses the potential of "workable vehicles" for rewarding landowners of private forest landowners for the many benefits their forests provide.

Stereo Photo Series For Estimating Natural Fuels In The Netherlands Volume 3: Veen, Brian P. Oswald

Faculty Publications

The photo series is a collection of photos and associated field data representing a region of The Netherlands. Volume 3 includes peatland vegetation types located in Northumberland National Park in England. These sites were used to represent those found in The Netherlands since peatlands in the UK are larger and thereby better for the field research. For each vegetation type, sites were sampled with varying fuel loads. The description of the sites consists of a wide-angle site photo, supplemented with field data on the various fuel loads and vegetative layers. The photo series is an important ecological tool to assess …

Loblolly Pine Growth Patterns On Reclaimed Mineland: Allometry, Biomass, And Volume, Jeremy Priest, Jeremy Stovall, Dean Coble, Brian Oswald, Hans Williams

Faculty Publications

Surface lignite coal mines in east Texas are commonly reforested using loblolly pine (Pinus taeda L.) following mining and reclamation activities. Due to the nature of such an extreme disturbance, altered growth patterns, growth rates, and productivity could be expected. We destructively sampled above- and belowground tissue to develop prediction equations specific to these sites. These prediction equations differed statistically from those found in the literature regarding unmined land. At the stand level, biomass and volume productivity appeared similar with young stands on reclaimed mineland performing slightly poorer than similarly managed unmined sites. Allometric partitioning of above- and belowground biomass …

Decomposition Of Three Common Moist-Soil Managed Wetland Plant Species, Daniel P. Collins, Warren C. Conway, Corey D. Mason, Jeffrey W. Gunnels

Faculty Publications

Moist-soil wetland management is used to precisely control delivery, duration, and timing of water addition to, and removal from, managed wetlands with targeted responses including germination and growth of desirable moist-soil plant species. Similarly, water delivery and removal drives decomposition of moist-soil plants as well as nutrient cycling within these systems, which is a key driver of productivity in such managed wetlands. Through deployment of litter bags, we examined rate of mass loss and decay coefficients of three locally abundant moist-soil annual species that are potentially valuable wintering-waterfowl food sources (nodding smartweed Persicaria lapathifolia, red-rooted flatnut sedge Cyperus erythrorhizos …

Special Speciation, Lyn L. Countryman, Jill D. Maroo

Faculty Publications

Considerable anecdotal evidence indicates that some of the most difficult concepts that both high school and undergraduate elementary-education students struggle with are those surrounding evolutionary principles, especially speciation. It’s no wonder that entry-level biology students are confused, when biologists have multiple definitions of “species.” We developed this speciation activity to provide clarity and allow students a hands-on experience with a speciation model.

Estimating The Sex Composition Of The Summer Flounder Catch Using Fishery-Independent Data, Jason M. Morson, Eleanor A. Bochenek, Eric N. Powell, Emerson C. Hasbrouck, Jennifer E. Gius, Charles F. Cotton, Kristin Gerbino, Tara Froehlich

Faculty Publications

Models that account for sex-specific behavior and population dynamics are becoming more common in the stock assessment of sexually dimorphic fishes. However, such models can be data intensive and require some knowledge or assumptions about the sex ratio of fishery landings. A recent stock assessment review of Summer Flounder Paralichthys dentatus identified the need to account for sex-specific fishing mortality in the assessment model; however, no data on the sex composition of the catch were available. Fishery-independent, sex-specific information for this species is collected annually by the National Marine Fisheries Service's Northeast Fisheries Science Center during their bottom trawl survey. …

Data For Sandler Et Al. 2015, Amanda Sandler, Libby Megna, James Hayward, Shandelle Henson, Cynthia Tkachuck, Richard Tkachuck

Faculty Publications

These data are archived for the paper "Every-other-day clutch-initiation synchrony in ring-billed gulls (Larus delawarensis)" by Sandler et al., submitted

Diet Of Larval Ambystoma Altamiranoi From Llano De Los Axolotes, Mexico, J. A. Lemos-Espinal, Geoffrey R. Smith, G. A. Woolrich-Pina

Faculty Publications

No abstract provided.

Amphibians And Reptiles Of The State Of Hidalgo, Mexico, J. A. Lemos-Espinal, Geoffrey R. Smith

Faculty Publications

No abstract provided.

Thermal Ecology, Sexual Dimorphism, And Diet Of Xenosaurus Tzacualtipantecus From Hidalgo, Mexico, J. Garcia-Rico, A. Diaz De La Vega-Pere, Geoffrey R. Smith, J. A. Lemos-Espinal, G. A. Woolrich-Pina

Faculty Publications

No abstract provided.

Metazoan Parasites Of Antarctic Fishes, Mehmet Cemal Oğuz, Yahya Tepe, Mark C. Belk, Richard A. Heckmann, Burçak Aslan, Meryem Gürgen, Rodney A. Bray, Ülker Akgül

Faculty Publications

To date, there have been nearly 100 papers published on metazoan parasites of Antarctic fishes, but there has not yet been any compilation of a species list of fish parasites for this large geographic area. Herein, we provide a list of all documented occurrences of monogenean, cestode, digenean, acanthocephalan, nematode, and hirudinean parasites of Antarctic fishes. The list includes nearly 250 parasite species found in 142 species of host fishes. It is likely that there are more species of fish parasites, which are yet to be documented from Antarctic waters.

Application Of Otolith Chemical Signatures To Estimate Population Connectivity Of Red Snapper In The Western Gulf Of Mexico, Michelle Zapp Sluis, Beverly K. Barnett, William F. Patterson, James H. Cowan, Alan M. Shiller

Faculty Publications

Otolith chemical signatures of Red Snapper Lutjanus campechanus from six nursery regions were used to estimate the sources of recruits to four sampling regions in the western Gulf of Mexico (Gulf) and to estimate whether postsettlement mixing of Red Snapper occurs between the U.S. and Mexican portions of the western Gulf. In a previous study, region-specific otolith signatures (element : Ca ratios: Ba:Ca, Mg:Ca, Mn:Ca, Sr:Ca, and Li:Ca; stable isotope delta values: δ¹³C and δ¹⁸O) were developed based on age-0 Red Snapper (2005–2007 year-classes) sampled from the six nursery areas. In the present study, subadult and …

First Successful Capture And Satellite Tracking Of A West Indian Manatee (Trichechus Manatus) In Panama: Feasibility Of Capture And Telemetry Techniques, Daniel Gonzalez-Socoloske, James P. Reid, Carlos Espinoza-Marin, Kherson E. Ruiz, Kenneth E. Glander, Leon David Olivera-Gomez

Faculty Publications

It is currently unknown how important the Central American countries south of Belize are as a link between manatee populations in the north (Belize and Mexico) and populations in South America. Therefore, apart from knowing where manatees are found, it is important to understand how manatees are using these habitats and if they are moving between countries or distinct population centers. Here we report the results of a multi-national and multiinstitutional collaboration resulting in the first successful capture and satellite tracking of a West Indian manatee in southern Central America.