Life Sciences Commons^™

Ecosystem Resistance In The Face Of Climate Change: A Case Study From The Freshwater Marshes Of The Florida Everglades, Sparkle L. Malone, Cynthia Keough, Christina L. Staudhammer, Michael G. Ryan, William J. Parton, Paulo Olivas, Steven F. Overbauer, Jessica L. Schedlbauer, Gregory Starr

Biology Faculty Publications

No abstract provided.

Maria Sibylla Merian (1647-1717): Pioneering Naturalist, Artist, And Inspiration For Catesby, Kay Etheridge, Florence F.J.M. Pieters

Biology Faculty Publications

Book Summary: While accessible to the interested general reader, it is a technical standard that is usable academically. Containing significant new information, this work is the most comprehensive and accurate book written about Catesby and is the legacy of the Catesby Commemorative Trust’s Mark Catesby Tercentennial symposium held in 2012.

Chapter Summary: Merian's books on European and Surinamese insects and plants provided new models for representing nature that were echoed in the work of artists and naturalists working in the eighteenth century and beyond. This chapter discusses how Mark Catesby, the subject of the book, was particularly influenced by Merian.

Kinematics Of Terrestrial Locomotion In Harbor Seals And Gray Seals: Importance Of Spinal Flexion By Amphibious Phocids, Jennifer N. Garrett, Frank E. Fish

Biology Faculty Publications

No abstract provided.

Estimation Of Shape Of The Sea Lion For Hydrodynamic Analysis. Response To 'Cambered Profile Of A California Sea Lion's Body', Frank E. Fish

Biology Faculty Publications

No abstract provided.

The Evolutionary Origination And Diversification Of A Dimorphic Gene Regulatory Network Through Parallel Innovations In Cis And Trans, Eric M. Camino, John C. Butts, Alison J. Ordway, Jordan E. Vellky, Mark Rebeiz, Thomas M. Williams

Biology Faculty Publications

The origination and diversification of morphological characteristics represents a key problem in understanding the evolution of development. Morphological traits result from gene regulatory networks (GRNs) that form a web of transcription factors, which regulate multiple cis-regulatory element (CRE) sequences to control the coordinated expression of differentiation genes. The formation and modification of GRNs must ultimately be understood at the level of individual regulatory linkages (i.e., transcription factor binding sites within CREs) that constitute the network. Here, we investigate how elements within a network originated and diversified to generate a broad range of abdominal pigmentation phenotypes among Sophophora fruit flies. …

Cell Type-Specific Responses To Wingless, Hedgehog And Decapentaplegic Are Essential For Patterning Early Eye-Antenna Disc In Drosophila, Jong-Hoon Won, Orkhon Tsogtbartarr, Wonseok Son, Amit Singh, Kwang-Wook Choi, Kyung-Ok Cho

Biology Faculty Publications

The Drosophila eye-antenna imaginal disc (ead) is a flattened sac of two-layered epithelia, from which most head structures are derived. Secreted morphogens like Wingless (Wg), Hedgehog (Hh), and Decapentaplegic (Dpp) are important for early patterning of ead, but the underlying mechanisms are still largely unknown. To understand how these morphogens function in the ead of early larval stages, we used wg-LacZ and dpp-Gal4 markers for the examination of wild-type and mutant eads. We found that the ead immediately after hatching was crescent-shaped with the Bolwig’s nerve at the ventral edge, suggesting that it consists of dorsal domain. In a subsequent …

Upside-Down Anthers Of Clethra Stand Out, W. John Hayden

Biology Faculty Publications

For the most part, the flowers of the 2015 VNPS Wildflower of the Year, Clethra alnifolia (Sweet Pepperbush), are unremarkable. Five separate sepals, 5 sepa rate petals, 10 stamens in 2 whorls, and a 3-carpellate superior ovary—an organization that can only be considered prosaic among the dicots. One floral feature, however, stands out: the anthers in the open flowers are upside-down! (See Figure 1A.) Further, these upside-down anthers open by pores (Figures 1B, 1C) rather than longitudinal slits, as in most flowering plants. These pores initially form on what would normally be the lowermost extremity of the anther, the inversion …

Seagrass Deterrence To Mesograzer Herbivory: Evidence From Mesocosm Experiments And Feeding Preference Trials, Latina Steele, John F. Valentine

Biology Faculty Publications

Two laboratory experiments documented the effects of mesograzers (i.e. the gastropod Crepidula ustulatulina and the isopod Paracerceis caudata) on phenolic acid and condensed tannin production in 2 regionally abundant seagrasses—Thalassia testudinum (turtlegrass) and Halodule wrightii (shoalgrass). Subsequent paired choice experiments tested the hypothesis that phenolic acids and condensed tannins produced by these seagrasses deter mesograzer feeding. At the scale of the shoot, grazing by gastropods and isopods led to ~40 to 50% decreases in concentrations of some phenolic acids and ~20% decreases in condensed tannins in turtlegrass leaves. At a more refined spatial scale, concentrations of 2 of these compounds …

Isaw: Integrating Structure, Actors, And Water To Study Socio-Hydro-Ecological Systems, Rebecca L. Hale, Andrea Armstrong, Michelle A. Baker, Sean Bedingfield, David Betts, Caleb Buahin, Martin Buchert, Todd Crowl, Ryan Dupont, James R. Ehleringer, Joanna Endter-Wada, Susannah S. French, Jacqualine Grant, Sarah Hinners, Jeffery S. Horsburgh, Douglas Jackson-Smith, Amber S. Jones, Erica S. Limb, Sarah E. Null, Augustina Odame, Diane E. Pataki, David Rosenberg, Madyln Runburg, Philip Stoker, Courtenay Strong

Biology Faculty Publications

Urbanization, climate, and ecosystem change represent major challenges for managing water resources. Although water systems are complex, a need exists for a generalized representation of these systems to identify important components and linkages to guide scientific inquiry and aid water management. We developed an integrated Structure-Actor-Water framework (iSAW) to facilitate the understanding of and transitions to sustainable water systems. Our goal was to produce an interdisciplinary framework for water resources research that could address management challenges across scales (e.g., plot to region) and domains (e.g., water supply and quality, transitioning, and urban landscapes). The framework was designed to be generalizable …

Further Examination Of The Geographic Range Of Eriogonum Corymbosum Var. Nilesii (Polygonaceae, Eriogoneae), Mark W. Ellis, Paul G. Wolf, Shannon Bardot, James A. Walton, Carol Rowe, Sarah Kulpa, Karen E. Mock

Biology Faculty Publications

The wild buckwheat Eriogonum corymbosum is widely distributed throughout the southwestern United States, forming a complex of eight varieties. E. corymbosum var. nilesii is a predominantly yellow-flowered variant reported primarily from Clark Co., Nevada. A previous genetic study by our research group found that var. nilesii is genetically distinct from other E. corymbosum varieties, based on a limited number of populations. Here, we assess genetic variation in 14 newly sampled yellow-flowered populations from southern Nevada, southern Utah, and northern Arizona, and compare them to genetic variation in six populations of previously determined E. corymbosum varieties. Of the new populations, we …

Integrating Interactive Computational Modeling In Biology Curricula, Tomáš Helikar, Christine E. Cutucache, Lauren M. Dahlquist, Tyler A. Herek, Joshua J. Larson, Jim A. Rogers

Biology Faculty Publications

While the use of computer tools to simulate complex processes such as computer circuits is normal practice in fields like engineering, the majority of life sciences/biological sciences courses continue to rely on the traditional textbook and memorization approach. To address this issue, we explored the use of the Cell Collective platform as a novel, interactive, and evolving pedagogical tool to foster student engagement, creativity, and higher-level thinking. Cell Collective is a Web-based platform used to create and simulate dynamical models of various biological processes. Students can create models of cells, diseases, or pathways themselves or explore existing models. This technology …

Ship-Induced Solitary Riemann Waves Of Depression In Venice Lagoon, Kevin E. Parnall, Tarmo Soomere, Luca Zaggia, Artem Rodin, Giuliano Lorenzetti, John Rapaglia, Gian Marco Scarpaf

Biology Faculty Publications

We demonstrate that ships of moderate size, sailing at low depth Froude numbers (0.37–0.5) in a navigation channel surrounded by shallow banks, produce depressions with depths up to 2.5 m. These depressions (Bernoulli wakes) propagate as long-living strongly nonlinear solitary Riemann waves of depression substantial distances into Venice Lagoon. They gradually become strongly asymmetric with the rear of the depression becoming extremely steep, similar to a bore. As they are dynamically similar, air pressure fluctuations moving over variable-depth coastal areas could generate meteorological tsunamis with a leading depression wave followed by a devastating bore-like feature.

Long-Term Impacts Of Disturbance On Nitrogen-Cycling Bacteria In A New England Salt Marsh, Anne E. Bernhard, Courtney Dwyer, Adrian Idrizi, Geoffrey Bender, Rachel Zwick

Biology Faculty Publications

Recent studies on the impacts of disturbance on microbial communities indicate communities show differential responses to disturbance, yet our understanding of how different microbial communities may respond to and recover from disturbance is still rudimentary. We investigated impacts of tidal restriction followed by tidal restoration on abundance and diversity of denitrifying bacteria, ammonia-oxidizing bacteria (AOB), and ammonia-oxidizing archaea (AOA) in New England salt marshes by analyzing nirS and bacterial and archaeal amoA genes, respectively. TRFLP analysis of nirS and betaproteobacterial amoA genes revealed significant differences between restored and undisturbed marshes, with the greatest differences detected in …

The Critical Importance Of Large Expanses Of Continuous Forest For Bird Conservation, Robert A. Askins

Biology Faculty Publications

No abstract provided.

Smoking Accelerates Pancreatic Cancer Progression By Promoting Differentiation Of Mdscs And Inducing Hb-Egf Expression In Macrophages, S. Kumar, M. P. Torres, S. Kaur, S. Rachagani, S. Joshi, S. L. Johansson, N. Momi, M. J. Baine, Christine E. Cutucache, L. M. Smith, T. A. Wyatt, M. Jain, S. S. Joshi, S. K. Batra

Biology Faculty Publications

Smoking is an established risk factor for pancreatic cancer (PC), but late diagnosis limits the evaluation of its mechanistic role in the progression of PC. We used a well-established genetically engineered mouse model (LSL-K-rasG12D) of PC to elucidate the role of smoking during initiation and development of pancreatic intraepithelial neoplasia (PanIN). The 10-week-old floxed mice (K-rasG12D; Pdx-1cre) and their control unfloxed (LSL-K-rasG12D) littermates were exposed to cigarette smoke (total suspended particles: 150 mg/m3) for 20 weeks. Smoke exposure significantly accelerated the development of PanIN lesions in the floxed mice, which correlated with tenfold increase in the expression of cytokeratin19. The …

Habituation To Auditory Stimuli By Captive African Elephants (Loxodonta Africana), Sarah Elizabeth Goodyear, Bruce A. Schulte

Biology Faculty Publications

Habituation is a major concern for the development of effective, long-term human-wildlife conflict mitigation and zoo enrichment programs. Elephants are cognitive species that exhibit many types of learning, such as associative, social, and insight learning. However, no study has examined the habituation process in elephants. Elephants possess a well-developed sensory system and may habituate to stimuli that could be used for enrichment and/or management. The aim of this study was to examine their habituation process in response to repeated presentations of two auditory stimuli: buzzing by a disturbed beehive and the sound created by banging on pots and pans, and …

Limited Role Of Functional Differentiation In Early Diversification Of Animals, Matthew L. Knope, N A. Heim, L O. Frishkoff, J L. Payne

Biology Faculty Publications

The origin of most animal phyla and classes during the Cambrian explosion has been hypothesized to represent an ‘early burst’ of evolutionary exploration of functional ecological possibilities. However, the ecological history of marine animals has yet to be fully quantified, preventing an assessment of the early-burst model for functional ecology. Here we use ecological assignments for 18,621 marine animal genera to assess the relative timing of functional differentiation versus taxonomic diversification from the Cambrian to the present day. We find that functional diversity increased more slowly than would be expected given the history of taxonomic diversity. Contrary to previous inferences …

An Integrative Approach To Phylogeography: Investigating The Effects Of Ancient Seaways, Climate, And Historical Geology On Multi-Locus Phylogeographic Boundaries Of The Arboreal Salamander (Aneides Lugubris), S B. Reilly, Ammon Corl, D B. Wake

Biology Faculty Publications

Background: Phylogeography is an important tool that can be used to reveal cryptic biodiversity and to better understand the processes that promote lineage diversification. We studied the phylogeographic history of the Arboreal Salamander (Aneides lugubris), a wide-ranging species endemic to the California floristic province. We used multi-locus data to reconstruct the evolutionary history of A. lugubris and to discover the geographic location of major genetic breaks within the species. We also used species distribution modeling and comparative phylogeography to better understand the environmental factors that have shaped the genetic history of A. lugubris.

Results: We found six major mitochondrial clades …

Revised Distribution For Otomops Martiensseni (Chiroptera: Molossidae) In Southern Africa, Rick A. Adams, Frank J. Bonaccorso, John R. Winkelmann

Biology Faculty Publications

We provide new data on the distributional range and abundance of the giant mastiff bat,Otomops martiensseni for which information on distribution and ecology are sorely needed. Because this species can forage at high altitudes, it is difficult to capture and most observations have been from caves and buildings. With the advent of new sonar gathering devices and analysis software, recording of echolocation calls can give unprecedented information on evasive bat species. Previous records from South Africa were restricted to the Durban area where several colonies in buildings were documented. No published records were available for Botswana. Our data expand …

Clues To Aquatic Beetle Research In Southeast Asia: A Multitude Of Ecological Niches, Microhabitats And Deduced Field Sampling Techniques, Hendrik Freitag

Biology Faculty Publications

The basic ecological classification of Southeast Asian beetle families that are associated with aquatic habitats is reviewed. The microhabitat preferences of the taxa are examined on family level with generic examples. Suitable collection methods for quantitative and qualitative sampling are suggested which take into account the different ecological adaptation patterns and microhabitat preferences.

Expression And Regulatory Effects On Cancer Cell Behavior Of Nell1 And Nell2 In Human Renal Cell Carcinoma, Ritsuko Nakamura, Takeru Oyama, Ryosuke Tajiri, Atsushi Mizokami, Mikiko Namiki, Masaru Nakamoto, Akishi Ooi

Biology Faculty Publications

Neural epidermal growth factor-like like (NELL) 1 and 2 constitute a family of multimeric and multimodular extracellular glycoproteins. Although the osteogenic effects of NELL1 and functions of NELL2 in neural development have been reported, their expression and functions in cancer are largely unknown. In this study, we examined expression of NELL1 and NELL2 in renal cell carcinoma (RCC) using clinical specimens and cell lines. We show that, whereas NELL1 and NELL2 proteins are strongly expressed in renal tubules in non-cancerous areas of RCC specimens, their expression is significantly downregulated in cancerous areas. Silencing of NELL1 and NELL2 mRNA expression was …

2015 Virginia Wildflower Of The Year: Sweet Pepperbush, Clethra Alnifolia, W. John Hayden

Biology Faculty Publications

Clethra alnifolia is a rhizomatous shrub with aerial stems from 1 to 3 m tall. Leaves are simple, alternate, and bear stellate hairs; petioles are short, 5–10 mm long; leaf blades are obovate to oblong, 5–10 cm long, with relatively blunt apices, cuneate (wedgelike) bases, and margins that are entire toward the base but finely serrate above the middle; venation is pinnate with secondary veins that extend to leaf margins. Stipules are lacking. Flowers are borne on erect terminal racemes that may be solitary or accompanied by additional racemes terminating few-leaved branches arising from upper nodes. Raceme axes and pedicels …

Little Things Reveal The Big Picture, W. John Hayden

Biology Faculty Publications

As enthusiasts who enjoy native plants in natural habitats, we tend to focus on gross morphology— aspects of plant form that can be readily observed with the naked eye or with a hand lens. And there is plenty to see at the gross level. The Flora of Virginia contains 1,269 pages of keys and descriptions devoted to gross morphology of the commonwealth’s botanical treasures. Morphological diversity, however, does not stop at the magnifi cation limit of a hand lens. Light and electron microscopes open up whole new worlds of intricate structure for appreciation and study. And tiny structural details can …

Biodiversity Comparison Among Phylogenetic Diversity Metrics And Between Three North American Prairies, P. Roxanne (Steele) Kellar, Dakota Ahrendsen, Shelly K. Aust, Amanda R. Jones, J. Chris Pires

Biology Faculty Publications

Protection of Earth’s ecosystems requires identification of geographical areas of greatest biodiversity. Assessment of biodiversity begins with knowledge of the evolutionary histories of species in a geographic area. Multiple phylogenetic diversity (PD) metrics have been developed to describe biodiversity beyond species counts, but sufficient empirical studies, particularly at fine phylogenetic scales, have not been conducted to provide conservation planners with evidence for incorporating PD metrics into selection of priority regions. We review notable studies that are contributing to a growing database of empirical results, we report on the effect of using high-throughput sequencing to estimate the phylogenies used to calculate …

Detrital Stoichiometry As A Critical Nexus For The Effects Of Streamwater Nutrients On Leaf Litter Breakdown Rates, David W. P. Manning, Amy D. Rosemond, John S. Kominoski, Vladislav Gulis, Jonathan P. Benstead, John C. Maerz

Biology Faculty Publications

Nitrogen (N) and phosphorus (P) concentrations are elevated in many freshwater systems, stimulating breakdown rates of terrestrially derived plant litter; however, the relative importance of N and P in driving litter breakdown via microbial and detritivore processing are not fully understood. Here, we determined breakdown rates of two litter species, Acer rubrum (maple) and Rhododendron maximum (rhododendron), before (PRE) and during two years (YR1, YR2) of experimental N and P additions to five streams, and quantified the relative importance of hypothesized factors contributing to breakdown. Treatment streams received a gradient of P additions (low to high soluble reactive phosphorus [SRP]; …

Community Chairs As A Catalyst For Campus Collaboration In Stem, Neal Grandgenett, David Boocker, Hesham Ali, Angela M. Hodge, Brian Dorn, Christine E. Cutucache

Biology Faculty Publications

Strong collaborative partnerships are critical to the ongoing success of any urban or metropolitan university in its efforts to build the science, technology, engineering, and mathematics (STEM) career pathways so critical to our nation. At the University of Nebraska at Omaha, we have established a faculty leadership structure of "community chairs" that work across colleges to support campus priorities. This paper describes UNO’s STEM community chair model, including selected initiatives, impacts, and challenges to date.

Facing A Changing World: Thermal Physiology Of American Pikas (Ochotona Princeps), Hans W. Otto, James A. Wilson, Erik A. Beever

Biology Faculty Publications

American pikas (Ochotona princeps) are of concern with respect to warming montane temperatures; however, little information exists regarding their physiological ability to adapt to warming temperatures. Previous studies have shown that pikas have high metabolism and low thermal conductance, which allow survival during cold winters. It has been hypothesized that these characteristics may be detrimental, given the recent warming trends observed in montane ecosystems. We examined resting metabolic rate, surface activity, and den and ambient temperatures (Ta) of pikas in late summer (August 2011 and 2012) at 2 locations in the Rocky Mountains. Resting metabolic rate was calculated to be …

Flow Through The Nasal Cavity Of The Spiny Dogfish, Squalus Acanthias, L. L. Timm-Davis, Frank E. Fish

Biology Faculty Publications

The nasal cavity of spiny dogfish is a blind capsule with no internal connection to the oral cavity. Water is envisioned to flow through the cavity in a smooth, continuous flow pattern; however, this assumption is based on previous descriptions of the morphology of the olfactory cavity. No experimentation on the flow through the internal nasal cavity has been reported. Morphology of the head of the spiny dogfish (Squalus acanthias) does not suggest a close external connection between the oral and nasal systems. However, dye visualization showed that there was flow through the nasal apparatus and from the excurrent nostril …

Low-To-Moderate Nitrogen And Phosphorus Concentrations Accelerate Microbially Driven Litter Breakdown Rates, John S. Kominoski, Amy D. Rosemond, Jonathan P. Benstead, Vladislav Gulis, John C. Maerz, David W. P. Manning

Biology Faculty Publications

Particulate organic matter (POM) processing is an important driver of aquatic ecosystem productivity that is sensitive to nutrient enrichment and drives ecosystem carbon (C) loss. Although studies of single concentrations of nitrogen (N) or phosphorus (P) have shown effects at relatively low concentrations, responses of litter breakdown rates along gradients of low‐to‐moderate N and P concentrations are needed to establish likely interdependent effects of dual N and P enrichment on baseline activity in stream ecosystems. We established 25 combinations of dissolved inorganic N (DIN; 55–545 μg/L) and soluble reactive P (SRP; 4–86 μg/L) concentrations with corresponding N:P molar ratios of …

Native Orchids In Winter?, W. John Hayden

Biology Faculty Publications

A very special place in Southwest Virginia will soon expand its borders, thanks in part to the annual fundraising appeal by the Virginia Native Plant Society. The Cedars Natural Area Preserve supports ex ceptional natural communities including rocky, dry limestone glades and woodlands located across nearly 20 square miles in Lee County near the Powell River. The karst landscape, where thin soils develop over easily dissolved limestone bedrock, creates terrain that tends to be rolling, rocky, rugged, and full of sinkholes, caves, and sinking streams. The preserve is a haven for rare plants that have adapted to the mostly thin, …