Life Sciences Commons^™

New Jersey Tea, Ceanothus Americanus, 2019 Virginia Wildlflower Of The Year, W. John Hayden

Biology Faculty Publications

New Jersey Tea is a low shrub, generally less than 1 m tall and often profusely branched. Stems are finely hairy, but may become smooth with age. Vegetative stems are perennial, but flowering stems persist for just a single year.

Retinoic Acid Inhibition Impairs Planarian Eye Regeneration, Gabrielle Bennetti, Aaron Corbin-Leftwich, Linda M. Boland, Isaac Skromne

Biology Faculty Publications

Retinoic acid is a known morphogen in regulating animal growth and development. Planaria are a key model system for regeneration and their eyes are a morphological marker of anterior differentiation. We explored the requirement for retinoic acid signaling in the regeneration of body parts in the planaria S. mediterranea using an inhibitor of retinoic acid synthesis, diethylaminobenzaldehyde (DEAB). Whole planaria, soaked in DEAB for three days prior to and five days following amputation, produced trunk and tail fragments with defective anterior regeneration. Following regeneration, up to 80% of posterior fragments developed abnormal eyes. The abnormalities included animals without eyes, with …

Postfledging Habitat Selection And Survival Of Henslow’S Sparrow: Management Implications For A Critical Life Stage, Aaron C. Young, W. Andrew Cox, John P. Mccarty, L. Lareesa Wolfenbarger

Biology Faculty Publications

Conserving populations of species that rely on rare habitat requires that managers understand which habitat characteristics will best support population growth across multiple life stages. For songbirds, management is most often aimed at nesting adult habitat associations. However, habitat that meets adult requirements may not be similarly suited to requirements for other life stages. Henslow’s Sparrow (Centronyx henslowii) is a tallgrass prairie songbird listed as threatened or endangered in 13 states. We examined survival and habitat selection of Henslow’s Sparrow during the postfledging period. During the nesting seasons in 2015 and 2016, we attached radio transmitters to 46 nestlings in …

Cognitive Processes That Indirectly Affect Olfactory Dysfunction In Parkinson's Disease, Attakias T. Mertens, Jonathan B. Santo, Katerina Markopoulou, Bruce A. Chase

Biology Faculty Publications

Introduction
Accurate early diagnosis of Parkinson's disease is hampered by its long prodromal period and the variable manifestations of its motor symptoms. While olfactory dysfunction can occur before motor-symptom onset and serve as a non-disease-specific diagnostic aid, its underlying causes are incompletely understood.

Methods
Correlation analyses, univariate density estimates, ANOVA and regression evaluated relationships between scores on the Montreal Cognitive Assessment and Hopkins Verbal Learning Test and those on the University of Pennsylvania Smell Identification Test in 1280 Parkinson's Progression Markers Initiative subjects placed into five diagnostic categories. Structural equation modeling identified cognitive measures having significant indirect effects on olfactory-function-test …

Bulldozing The Stem Silos In Omaha: While Engaging P-12 Teachers And Building Campus Stem Excellence, Neal Grandgenett, Christine Cutucache, William Tapprich, Brian Dorn

Biology Faculty Publications

It has been said that all universities “do STEM these days”, but what exactly does it take to “do STEM” well? Questions commonly heard on a university campus these days include: “What is the STEM context for inquiry?”, “Should P-16 STEM be a campus priority?”, “How can a campus break down departmental silos for interdisciplinary workforce development?” In many ways STEM represents, at its core, an interdisciplinary approach and workforce development context to learning, that rigorously engages the core concepts of science, technology, engineering, and mathematics (Tsupros, N., Kohler, R. and Hallinen, J., 2009; National Science and Technology Council, 2018). …

Exploring The Efficacy Of Natural Products In Alleviating Alzheimer’S Disease Using Animal Models, Prajakta Deshpande, Neha Gogia, Amit Singh

Biology Faculty Publications

Alzheimer’s disease (hereafter AD) is a progressive neurodegenerative disorder that affects the central nervous system. There are multiple factors that cause AD, viz., accumulation of extracellular Amyloid-beta 42 plaques, intracellular hyper-phosphorylated Tau tangles, generation of reactive oxygen species due to mitochondrial dysfunction and genetic mutations. The plaques and tau tangles trigger aberrant signaling, which eventually cause cell death of the neurons. As a result, there is shrinkage of brain, cognitive defects, behavioral and psychological problems. To date, there is no direct cure for AD. Thus, scientists have been testing various strategies like screening for the small inhibitor molecule library …

Finding Common Rules Of Robustness And Resilience That Span Multiple Levels Of Biological Organization, Robert Burnap, Jing Chen, Erica Crespi, Moumita Das, Rebecca Simmons, Zhen Wang, Jie Xiao, Bing Yang, John Yin

Biology Faculty Publications

Today, humans as a species face significant global challenges: meeting the needs of an ever expanding human population for food and energy from limited land, water and other resources; finding ways to counter rapidly changing pathogens that become resistant to current treatments; adapting to climate change that is linked to more frequent flooding, drought, wildfires and temperature extremes; and reversing the deterioration of ecosystems associated with human induced alterations of the environment. Owing to its resilience and robustness, life in one form or another will likely persist, but it is unknown by what mechanisms or in what forms. Much is …

Mice Fed An Obesogenic Western Diet, Administered Antibiotics, And Subjected To A Sterile Surgical Procedure Develop Lethal Septicemia With Multidrug-Resistant Pathobionts, Sanjiv K. Hyoju, Alexander Zaborin, Robert Keskey, Anukriti Sharma, Wyatt Arnold, Fons Van Den Berg, Sangman Michael Kim, Neil Gottel, Cindy Bethel, Angella Charnot-Katsikas, Peng Jianxin, Carleen Adriaansens, Emily Papazian, Jack A. Gilbert, Olga Zaborina, John C. Alverdy

Biology Faculty Publications

Despite antibiotics and sterile technique, postoperative infections remain a real and present danger to patients. Recent estimates suggest that 50% of the pathogens associated with postoperative infections have become resistant to the standard antibiotics used for prophylaxis. Risk factors identified in such cases include obesity and antibiotic exposure. To study the combined effect of obesity and antibiotic exposure on postoperative infection, mice were allowed to gain weight on an obesogenic Western-type diet (WD), administered antibiotics and then subjected to an otherwise recoverable sterile surgical injury (30% hepatectomy). The feeding of a WD alone resulted in a major imbalance of the …

Ne Stem 4u Afterschool Intervention Leads To Gains In Stem Content Knowledge For Middle School Youth, Christine E. Cutucache, Taylor Boham, Jamie Luhr, Amie Sommers, Nikolaus Stevenson, Erkko Sointu, Kati Mäkitalo‐Siegl, Sirpa Kärkkäinen, Teemu Valtonen, Neal Grandgenett, William Tapprich

Biology Faculty Publications

Afterschool interventions in STEM are linked to learning gains during the school day. These opportunities engage and excite students about STEM concepts since they observe a more hands-on, project-oriented approach. Often these opportunities for afterschool interventions are infrequent in nature and leave gaps for students in their maturation and understanding. Herein we describe the first report of an afterschool intervention, named NE STEM 4U, targeting socioeconomically disadvantaged middle school youth via a twice weekly, year-long intervention, studied across two years. We assessed the impact of this program on i.) short-term, individual student gains in STEM content knowledge and ii.) delivery …

Miniscule Differences Between Sex Chromosomes In The Giant Genome Of A Salamander, Melissa C. Keinath, Nataliya Y. Timoshevskaya, Vladimir A. Timoshevskiy, S. Randal Voss, Jeramiah J. Smith

Biology Faculty Publications

In the Mexican axolotl (Ambystoma mexicanum), sex is determined by a single Mendelian factor, yet its sex chromosomes do not exhibit morphological differentiation typical of many vertebrate taxa that possess a single sex-determining locus. As sex chromosomes are theorized to differentiate rapidly, species with undifferentiated sex chromosomes provide the opportunity to reconstruct early events in sex chromosome evolution. Whole genome sequencing of 48 salamanders, targeted chromosome sequencing and in situ hybridization were used to identify the homomorphic sex chromosome that carries an A. mexicanum sex-determining factor and sequences that are present only on the W chromosome. Altogether, …

Effect Of Temperature Change On Synaptic Transmission At Crayfish Neuromuscular Junctions, Yuechen Zhu, Leo De Castro, Robin L. Cooper

Biology Faculty Publications

Ectothermic animals in areas characterised by seasonal changes are susceptible to extreme fluctuations in temperature. To survive through varied temperatures, ectotherms have developed unique strategies. This study focuses on synaptic transmission function at cold temperatures, as it is a vital component of ectothermic animals' survival. For determining how synaptic transmission is influenced by an acute change in temperature (20°C to 10°C within a minute) and chronic cold (10°C), the crayfish (Procambarus clarkii) neuromuscular junction (NMJ) was used as a model. To simulate chronic cold conditions, crayfish were acclimated to 15°C for 1 week and then to 10°C for …

Reducing Protected Lands In A Hotspot Of Bee Biodiversity: Bees Of Grand Staircase-Escalante National Monument, Joseph S. Wilson, Matt Kelly, Olivia Messinger Carril

Biology Faculty Publications

Grand Staircase-Escalante National Monument is a federally protected area found in central southern Utah. Designated in 1996 by President William J. Clinton, it was recently reduced in size by President Donald J. Trump in a proclamation that turned the one large monument into three smaller ones. A long-term, standardized study of the bees had been conducted from 2000–2003, revealing 660 species. The bee communities of the area are characterized by being spatially heterogeneous; most of the bees occur in isolated areas, with only a few being both abundant and widespread. Here we examine what affect the recent resizing of the …

Polyvinylidene Difluoride Piezoelectric Electrospun Nanofibers: Review In Synthesis, Fabrication, Characterizations, And Applications, Zainab Abu Alhasssan, Yasmeen S. Burezq, Remya Nair, Nader Shehata

Biology Faculty Publications

This review article highlights the methods and principles used for PVDF nanofiber creation and the use of these nanofibers in different fields by utilizing its piezoelectric performance, etc. The studies include different techniques to improve the alignment and piezoelectric behavior of nanofibers. The pressure versus sensitivity behavior of PVDF substrate is thoroughly analyzed. The optimum conditions (of experimental parameters) of the electrospinning technique are carefully studied to improve the structure, alignment, and performance of the generated nanofiber mats. In addition to experimental methods, the preparation of nanocomposites with carbon nanotubes (CNTs) also can improve the structure, alignment, and piezoelectric performance. …

Long-Term Experimental Hybridisation Results In The Evolution Of A New Sex Chromosome In Swordtail Fish, Paolo Franchini, Julia C. Jones, Peiwen Xiong, Susanne Kneitz, Zachariah Gompert, Wesley C. Warren, Ronald B. Walter, Axel Meyer, Manfred Schartl

Biology Faculty Publications

The remarkable diversity of sex determination mechanisms known in fish may be fuelled by exceptionally high rates of sex chromosome turnovers or transitions. However, the evolutionary causes and genomic mechanisms underlying this variation and instability are yet to be understood. Here we report on an over 30-year evolutionary experiment in which we tested the genomic consequences of hybridisation and selection between two Xiphophorus fish species with different sex chromosome systems. We find that introgression and imposing selection for pigmentation phenotypes results in the retention of an unexpectedly large maternally derived genomic region. During the hybridisation process, the sex-determining region of …

A Low-Intensity, Hybrid Design Between A "Traditional" And A "Course-Based" Research Experience Yields Positive Outcomes For Science Undergraduate Freshmen And Shows Potential For Large-Scale Application, Thushani Rodrigo-Peiris, Lin Xiang, Vincent M. Cassone

Biology Faculty Publications

Based on positive student outcomes, providing research experiences from early undergraduate years is recommended for science, technology, engineering, and mathematics (STEM) majors. To this end, we designed a novel research experience called the “STEMCats Research Experience” (SRE) for a cohort of 119 second-semester freshmen with diverse college preparatory levels, demographics, and academic majors. The SRE targeted student outcomes of enhancing retention in STEM majors, STEM competency development, and STEM academic performance. It was designed as a hybrid of features from apprenticeship-based traditional undergraduate research experience and course-based undergraduate research experience designs, considering five factors: 1) an authentic research experience, 2) …

The Effects Of Diet And Mating System On Reproductive (And Post‐Reproductive) Life Span In A Freshwater Snail, Josh R. Auld

Biology Faculty Publications

The length of the reproductive life span, along with the number/frequency/magnitude of reproductive events, quantifies an individual’s potential contribution to the next generation. By examining reproductive life span, and distinguishing it from somatic life span, we gain insight into critical aspects of an individual’s potential fitness as well as reproductive and somatic senescence. Additionally, differentiating somatic and reproductive life spans can provide insight into the existence of a post‐reproductive period and factors that shape its duration. Given the known importance of diet and mating system on resource allocation, I reared individual freshwater snails (Physa acuta) from 22 full‐sib families under …

Motivations And Satisfaction Of North Dakota Deer Hunters During A Temporal Decline In Deer Populations, Kristen E. Black, William F. Jensen, Robert Newman, Jason Boulanger

Biology Faculty Publications

Achieving state wildlife agency biological goals for deer (Odocoileus spp.) management may often conflict with hunter desires. Concomitantly, better information is needed to optimize agency deer herd management goals with hunters’ social goals. In 2016, we surveyed 3,000 North Dakota, USA, resident deer hunters using a self-administered mail survey to gain a better understanding of motivations, satisfaction, and hunter demographics that may be used to inform hunter recruitment and retention (HRR) efforts during a period of reduced statewide deer populations. With deer-gun license availability strictly limited, we explored the possibility that some gun hunters may have been engaging …

High Phenolic Content Fails To Deter Mesograzer Consumption Of Myriophyllum Spicatum (Eurasian Watermilfoil) In New England, Latina Steele, Courtney Ray, Michele Guidone

Biology Faculty Publications

Eurasian watermilfoil (Myriophyllum spicatum) is often considered one of the most aggressive macrophyte invaders in freshwater habitats throughout the United States. However, conditions leading to successful milfoil invasions are not well understood. This study sought to illuminate the role of 4 herbivores in determining milfoil invasion success via either enemy release or biotic resistance. We determined feeding preferences of three herbivores native to the northeastern United States and measured milfoil phenolic content, which may act as an herbivore feeding deterrent. We found that phenolic content in milfoil was two times higher than in two of the most abundant native macrophytes …

The Contribution Of The Descending Pain Modulatory Pathway In Opioid Tolerance, Lindsay M. Lueptow, Amanda K. Fakira, Erin N. Bobeck

Biology Faculty Publications

Opioids remain among the most effective pain-relieving therapeutics. However, their long-term use is limited due to the development of tolerance and potential for addiction. For many years, researchers have explored the underlying mechanisms that lead to this decreased effectiveness of opioids after repeated use, and numerous theories have been proposed to explain these changes. The most widely studied theories involve alterations in receptor trafficking and intracellular signaling. Other possible mechanisms include the recruitment of new structural neuronal and microglia networks. While many of these theories have been developed using molecular and cellular techniques, more recent behavioral data also supports these …

Meta-Analysis Challenges A Textbook Example Of Status Signalling And Demonstrates Publication Bias, Alfredo Sánchez-Tójar, Shinichi Nakagawa, Moisès Sánchez-Fortún, Dominic A. Martin, Sukanya Ramani, Antje Girndt, Veronika Bókony, Bart Kempenaers, András Liker, David F. Westneat, Terry Burke, Julia Schroeder

Biology Faculty Publications

The status signalling hypothesis aims to explain within-species variation in ornamentation by suggesting that some ornaments signal dominance status. Here, we use multilevel meta-analytic models to challenge the textbook example of this hypothesis, the black bib of male house sparrows (Passer domesticus). We conducted a systematic review, and obtained primary data from published and unpublished studies to test whether dominance rank is positively associated with bib size across studies. Contrary to previous studies, the overall effect size (i.e. meta-analytic mean) was small and uncertain. Furthermore, we found several biases in the literature that further question the support available …

Derivatives Of A Benzoquinone Acyl Hydrazone With Activity Against Toxoplasma Gondii, A. G. Sanford, T. T. Schulze, L. P. Potluri, G. F. Watson, E. B. Darner, S. J. Zach, R. M. Hemsley, A. I. Wallick, R. C. Warner, S. A. Charman, X. Wang, J. L. Vennerstrom, P. H. Davis

Biology Faculty Publications

Toxoplasma gondii is an obligate intracellular parasite with global incidence. The acute infection, toxoplasmosis, is treatable but current regimens have poor host tolerance and no cure has been found for latent infections. This work builds upon a previous high throughput screen which identified benzoquinone acyl hydrazone (KG8) as the most promising compound; KG8 displayed potent in vitro activity against T. gondii but only marginal in vivoefficacy in a T. gondii animal model. To define the potential of this new lead compound, we now describe a baseline structure-activity relationship for this chemotype. Several derivatives displayed IC50's comparable …

Recruitment, Survival, And Parasitism Of Monarch Butterflies (Danaus Plexippus) In Milkweed Gardens And Conservation Areas, Emily A. Geest, L. Lareesa Wolfenbarger, John P. Mccarty

Biology Faculty Publications

Monarch butterflies (Danaus plexippus) are suffering from declining populations and conservationists have encouraged planting milkweed gardens in urban and suburban landscapes to help offset habitat loss across the breeding range. The effectiveness of gardens as a conservation strategy depends on their ability to attract ovipositing adults and the survival of monarch larvae in these gardens. Larvae are susceptible to a variety of predators as well as to parasitism by a tachinid fly (Lespesia archippivora) and a protozoan parasite (Ophryocystis elektroscirrha) which cause lethal or sublethal effects, yet the severity of these risks in gardens …

The Mitochondrial Genome Of The Endemic Brazilian Paradoxial Frog Pseudis Tocantins (Hylidae), Kaleb Pretto Gatto, Jeramiah J. Smith, Luciana Bolsoni Lourenço

Biology Faculty Publications

In this work, we present for the first time the mitochondrial genome of a paradoxical frog (Pseudis tocantins). This genome is 15.56 kb, excluding the control region, and is similar in gene content to other hylid mitogenomes. Maximum likelihood analysis, using the mitogenomes of several anurans, indicated P. tocantins as closely related to other hylid species.

Review Of The Family Rivulidae (Cyprinodontiformes, Aplocheiloidei) And A Molecular And Morphological Phylogeny Of The Annual Fish Genus Austrolebias Costa 1998, Marcelo Loureiro, Rafael O. De Sá, Sebastián W. Serra, Felipe Alonso, Luis Esteban Krause Lanés, Matheus Vieira Volcan, Pablo Calviño, Dalton Nielsen, Alejandro Duarte, Graciela Garcia

Biology Faculty Publications

The family Rivulidae is the fourth most diverse clade of Neotropical fishes. Together with some genera of the related African family Nothobranchiidae, many rivulids exhibit a characteristic annual life cycle, with diapausing eggs and delayed embryonic development, which allows them to survive in the challenging seasonal ponds that they inhabit. Rivulidae also includes two species known as the only the self-fertilizing vertebrates and some species with internal fertilization. The first goal of this article is to review the systematics of the family considering phylogenetic relationships and synapomorphies of subfamilial clades, thus unifying information that is dispersed throughout the literature. From …

Life Science Undergraduate Mentors In Ne Stem 4u Significantly Outperform Their Peers In Critical Thinking Skills, Kari L. Nelson, Claudia M. Rauter, Christine E. Cutucache

Biology Faculty Publications

The development of critical thinking skills in recent college graduates is keenly requested by employers year after year. Moreover, improving these skills can help students to better question and analyze data. Consequently, we aimed to implement a training program that would add to the critical thinking skills of undergraduate students: Nebraska Science, Technology, Engineering, and Math 4U (NE STEM 4U). In this program, undergraduates provide outreach, mentoring, and science, technology, engineering, and mathematics (STEM) education to K–8 students. To determine the impacts of serving as an undergraduate mentor in this program on critical thinking, we compared undergraduate mentors (intervention group) …

High-Resolution Identification Of Multiple Salmonella Serovars In A Single Sample By Using Crispr-Seroseq, Cameron P. Thompson, Alexandra N. Doak, Naufa Amirani, Erin A. Schroeder, Justin Wright, Subhashinie Kariyawasam, Regina Lamendella, Nikki Shariat

Biology Faculty Publications

Salmonella enterica is represented by >2,600 serovars that can differ in routes of transmission, host colonization, and in resistance to antimicrobials. S. enterica is the leading bacterial cause of foodborne illness in the United States, with well-established detection methodology. Current surveillance protocols rely on the characterization of a few colonies to represent an entire sample; thus, minority serovars remain undetected. Salmonella contains two CRISPR loci, CRISPR1 and CRISPR2, and the spacer contents of these can be considered serovar specific. We exploited this property to develop an amplicon-based and multiplexed sequencing approach, CRISPR-SeroSeq (serotyping by sequencing of the CRISPR loci), to …

Dispersal In Host–Parasitoid Interactions: Crop Colonization By Pests And Specialist Enemies, Edward W. Evans

Biology Faculty Publications

Interactions of insect pests and their natural enemies increasingly are being considered from a metapopulation perspective, with focus on movements of individuals among habitat patches (e.g., individual crop fields). Biological control may be undercut in short-lived crops as natural enemies lag behind the pests in colonizing newly created habitat. This hypothesis was tested by assessing parasitism of cereal leaf beetle (Oulema melanopus) and alfalfa weevil (Hypera postica) larvae at varying distances along transects into newly planted fields of small grains and alfalfa in northern Utah. The rate of parasitism of cereal leaf beetles and alfalfa weevils …

Factors Affecting Gastropod Larval Development And Performance: A Systematic Review, Maria Rosa, Dianna K. Padilla, David Charifson, Alyssa Liguori, Mica Mccarty-Glenn, Allison Rugila

Biology Faculty Publications

The goal of this article was to use a systematic review of studies on the larval stages of gastropods reared to metamorphosis to determine whether there are general patterns for the effects of temperature, rearing density, and food availability on larval development and performance among species, major taxa, and modes of development. Most studies did not include sufficient metadata to be included in many of the analyses. For all analyses, there were differences among major groups of taxa in terms of response to the considered variables. Increased temperature was frequently correlated with decreased development time and increased growth but often …

Decadal Effects Of Thinning On Understory Light Environments And Plant Community Structure In A Subtropical Forest, Ho-Chen Tsai, Jyh-Min Chiang, Ryan Mcewan, Teng-Chiu Lin

Biology Faculty Publications

Canopy-opening disturbance such as thinning has immediate and substantive effects on understory microclimate and therefore the establishment and growth of understory plants. A large number of studies have reported the effects of thinning on tree growth, but few studies have examined long-term effects of thinning on understory light environments and species and functional diversity of understory plants. Even less is known whether the change in understory plant community structure observed following canopy disturbance is short-lived and would diminish as the canopy closes or a long lasting due to legacy effects. We examined the effects of an experimental removal of 25% …

Using Transcriptomics To Enable A Plethodontid Salamander (Bolitoglossa Ramosi) For Limb Regeneration Research, Claudia M. Arenas Gómez, Ryan M. Woodcock, Jeramiah J. Smith, Randal S. Voss, Jean Paul Delgado

Biology Faculty Publications

Background: Tissue regeneration is widely distributed across the tree of life. Among vertebrates, salamanders possess an exceptional ability to regenerate amputated limbs and other complex structures. Thus far, molecular insights about limb regeneration have come from a relatively limited number of species from two closely related salamander families. To gain a broader perspective on the molecular basis of limb regeneration and enhance the molecular toolkit of an emerging plethodontid salamander (Bolitoglossa ramosi), we used RNA-Seq to generate a de novo reference transcriptome and identify differentially expressed genes during limb regeneration.

Results: Using paired-end Illumina sequencing technology and Trinity …