Life Sciences Commons^™

Suspension Of Gametogenesis In Green Sea Urchins Experiencing Invariant Photoperiod, S. Anne Boettger, Michael G. Devin, Charles W. Walker

Biology Faculty Publications

No abstract provided.

Eye Development At The Houston "Fly Meeting", Amit Singh

Biology Faculty Publications

Meeting report: The 47th Annual Drosophila Research Conference or "Fly Meeting" took place at Houston, Texas, USA from March 29th- April 2nd, 2006, under the aegis of the Genetics Society of America. The Fly Meeting provides an excellent opportunity for fly researchers to present their work and to get a snapshot of recent developments and upcoming trends in their research field. The fruit fly, Drosophila melanogaster, is a very versatile model to study growth, patterning, neural development, evolution, systemetics and various other facets of biomedical science. The topics presented in the meeting covered a very broad spectrum of fly research. …

Gene Expression And Discovery During Lens Regeneration In Mouse: Regulation Of Epithelial To Mesenchymal Transition And Lens Differentiation, Mario Medvedovic, Craig R. Tomlinson, Mindy Kay Call, Matthew Grogg, Panagiotis A. Tsonis

Biology Faculty Publications

Purpose: It has been shown that after extracapsular lens removal by anterior capsulotomy in the mouse, the lens can be regenerated. However, as the capsular bag is filled with fibers, epithelial to mesenchymal transition (EMT), an event which is common after cataract surgery as well, takes place during early stages. This study, using a unique mouse model, was undertaken to identify novel regulators and networks in order to more clearly understand secondary cataracts at the molecular level.

Intra-Guild Compensation Regulates Species Richness In Desert Rodents: Reply, J. R. Goheen, Ethan P. White, S.K. Morgan Ernest, J. H. Brown

Biology Faculty Publications

Null models have had a long and contentious history in community ecology (Connor and Simberloff 1979, Harvey et al. 1983, Gotelli and Graves 1996, Graves and Rahbek 2005). Much of this debate has arisen because multiple strategies for null models can be used to address a particular question of interest, and the present exchange is no exception. To assess constancy in species richness through time in a desert rodent community, Nichols et al. (2006) have proposed a Markov Chain model as an alternative to the random-walk model we developed (Goheen et al. 2005). While both null models simulate stochastic local …

Intra-Guild Compensation Regulatesspecies Richness In Desert Rodents: Reply, J. R. Goheen, Ethan P. White, S.K. Morgan Ernest, J. H. Brown

Biology Faculty Publications

No abstract provided.

2006 Wildflower Of The Year: Spicebush, Lindera Benzoin, W. John Hayden

Biology Faculty Publications

Spicebush is a multistemmed deciduous shrub that grows to a height of one to three meters. Young stems are delicate and may be smooth or finely hairy. Leaves are alternate and simple, with an elliptic to obovate blade that tapers at both the base and apex and is bounded by a smooth margin. Examined closely, the margin will reveal a series of fine hairs that project directly out from the leaf edge. In size, leaves are neither remarkably large nor small; they range from one to six inches in length and up to about two and a half inches wide, …

A Switch From Polyandry To Serial Monogamy: Results From A Three Year Tagging Study Of Horseshoe Crabs In Long Island Sound, Jennifer Mattei Ph.D., Paul Goodell, Christine Depierro, Meghann Burke

Biology Faculty Publications

Part of an ongoing population study of the North American Horseshoe Crab, Limulus polyphemus, in Long Island Sound was completed during the 2003 – 2005 spawning seasons at Milford Point, in Milford, CT. Horseshoe crabs range more widely throughout Long Island Sound than expected and exhibit weak site fidelity. Animals originally tagged in Milford were found as far west as Stamford and as far east as Clinton, CT. during the 3 year study. Out of 522 female horseshoe crabs tagged in 2004 only 4 came back to spawn again at Milford Pt. in 2005. The sex ratios of tagged and …

Sal-Site: Integrating New And Existing Ambystomatid Salamander Research And Informational Resources, Jeramiah J. Smith, Srikrishna Putta, John A. Walker, D. Kevin Kump, Amy K. Samuels, James R. Monaghan, David W. Weisrock, Chuck Staben, S. Randal Voss

Biology Faculty Publications

Salamanders of the genus Ambystoma are a unique model organism system because they enable natural history and biomedical research in the laboratory or field. We developed Sal-Site to integrate new and existing ambystomatid salamander research resources in support of this model system. Sal-Site hosts six important resources: 1) Salamander Genome Project: an information-based web-site describing progress in genome resource development, 2) Ambystoma EST Database: a database of manually edited and analyzed contigs assembled from ESTs that were collected from A. tigrinum tigrinum and A. mexicanum, 3) Ambystoma Gene Collection: a database containing full-length protein-coding sequences, 4) Ambystoma Map and Marker …

Seagrass–Pathogen Interactions: ‘Pseudo-Induction’ Of Turtlegrass Phenolics Near Wasting Disease Lesions, Latina Steele, Melanie Caldwell, Anne Boettcher, Tom Arnold

Biology Faculty Publications

Marine protists of the genus Labyrinthula cause the seagrass wasting disease, which is associated with regional die-offs of eelgrass Zostera marina and also infects turtlegrass Thalassia testudinum . The ability of seagrasses to resist pathogen attack is determined by multiple factors, which are poorly understood. One factor hypothesized to influence seagrass disease resistance is the presence of (poly)phenolic natural products such as caffeic acid, which inhibits the growth of L. zosterae in in vitro laboratory bioassays. This hypothesis has been supported by reports of pathogen-induced phenolic accumulations in eelgrass Z. marina. To test the response of T. testudinum to …

Empirical Analysis Of The Str Profiles Resulting From Conceptual Mixtures, David R. Paoletti, Travis E. Doom, Carissa M. Krane, Michael L. Raymer, Dan E. Krane

Biology Faculty Publications

Samples containing DNA from two or more individuals can be difficult to interpret. Even ascertaining the number of contributors can be challenging and associated uncertainties can have dramatic effects on the interpretation of testing results. Using an FBI genotypes dataset, containing complete genotype information from the 13 Combined DNA Index System (CODIS) loci for 959 individuals, all possible mixtures of three individuals were exhaustively and empirically computed. Allele sharing between pairs of individuals in the original dataset, a randomized dataset and datasets of generated cousins and siblings was evaluated as were the number of loci that were necessary to reliably …

Callose (Β-1,3 Glucan) Is Essential For Arabidopsis Pollen Wall Patterning, But Not Tube Growth, Rob Swanson

Biology Faculty Publications

Background: Callose (β-1,3 glucan) separates developing pollen grains, preventing their underlying walls (exine) from fusing. The pollen tubes that transport sperm to female gametes also contain callose, both in their walls as well as in the plugs that segment growing tubes. Mutations in CalS5, one of several Arabidopsis β-1,3 glucan synthases, were previously shown to disrupt callose formation around developing microspores, causing aberrations in exine patterning, degeneration of developing microspores, and pollen sterility. Results: Here, we describe three additional cals5 alleles that similarly alter exine patterns, but instead produce fertile pollen. Moreover, one of these alleles (cals5-3) resulted in the …

Redescripción De La Morfología Larval Externa De Dos Especies Del Grupo De Leptodactylus Fuscus (Anura, Leptodactylidae), José A. Langone, Rafael O. De Sá

Biology Faculty Publications

Re-description of the larval external morphology of two species of the Leptodactylus fuscus group (Anura, Leptodactylidae). The larvae of Leptodactylus gracilis (D’Orbigny y Bibron, 1840) and L. mystacinus Bumeister, 1861 are re-described and compared with previous descriptions noting intraspecific variation in oral disc characteristics (arrangement of papillae and rows of cornified teeth). The external morphological analysis of larvae of the Leptodactylus fuscus group suggest that the lack of comparable descriptions among species, as well as the lack of analyses of their intraspecific variation, limits the use of larval characteristics for diagnostic purposes.

A Phylogenetic Analysis Of Vanzolinius Heyer, 1974 (Amphibia, Anura, Leptodactylidae): Taxonomic And Life History Implications, Rafael O. De Sá, W. Ronald Heyer, Arley Camargo

Biology Faculty Publications

The validity of the monotypic leptodactylid frog genus Vanzolinius Heyer, 1974 has been questioned recently. We explore the relationship of Vanzolinius discodactylus within the cluster of closely related genera Adenomera, Leptodacylus, and Lithodytes with both morphological and molecular data sets. Morphological and combined morphological and molecular data were analyzed using maximum parsimony; molecular data sets were analyzed with maximum likelihood methods. The resultant relationships are unambiguous in Vanzolinius being imbedded within Leptodactylus. In order to maintain Leptodactylus as a monophyletic genus, Vanzolinius is placed in the synonymy of Leptodactylus Fitzinger, 1826. The implications of relationships analyzed in …

Atypical Pkciota Contributes To Poor Prognosis Through Loss Of Apical-Basal Polarity And Cyclin E Overexpression In Ovarian Cancer, Astrid M. Eder, Xiaomei Sui, Daniel G. Rosen, Laura K. Nolden, Kwai Wa Cheng, John P. Lahad, Madhuri Kango-Singh, Karen H. Lu, Carla L. Warneke, Edward N. Atkinson, Isabelle Bedrosian, Khandan Keyomarsi, Wen-Lin Kuo, Joe W. Gray, Jerry C. P. Yin, Jinsong Liu, Georg Halder, Gordon B. Mills

Biology Faculty Publications

We show that atypical PKCι, which plays a critical role in the establishment and maintenance of epithelial cell polarity, is genomically amplified and overexpressed in serous epithelial ovarian cancers. Furthermore, PKCι protein is markedly increased or mislocalized in all serous ovarian cancers. An increased PKCι DNA copy number is associated with decreased progression-free survival in serous epithelial ovarian cancers. In a Drosophila in vivo epithelial tissue model, overexpression of persistently active atypical PKC results in defects in apical-basal polarity, increased Cyclin E protein expression, and increased proliferation. Similar to the Drosophila model, increased PKCι proteins levels are associated with …

"Sibling Species, Advertisement Calls, And Reproductive Isolation In Frogs Of The Leptodactylus Pentadactylus Species Cluster (Amphibia, Leptodactylidae), W. Ronald Heyer, Rafael O. De Sá, A. Rettig

Biology Faculty Publications

A recent re-evaluation of morphological and advertisement call variation in the large species of frogs of the Leptodactylus pentadactylus cluster discovered more examples of sibling species as defined by Ernst Mayr in his influential book Animal Species and Evolution. All previously documented instances of sibling species in frogs demonstrated advertisement call differentiation consistent with the calls serving as pre-mating isolating mechanisms. However, we find one instance of two species with nondistinguishable adult morphologies as well as nondistinguishable advertisement calls. Presumably, the new instances of sibling species reflect retention of ancestral adult morphologies and advertisement calls. Larval and habitat differentiation appear …

Group 13 Hox Proteins Interact With The Mh2 Domain Of R-Smads And Modulate Smad Transcriptional Activation Functions Independent Of Hox Dna Binding Capability, Thomas M. Williams, Melissa E. Williams, Joanne H. Heaton, Thomas D. Gelehrter, Jeffrey W. Innis

Biology Faculty Publications

Interactions with co-factors provide a means by which HOX proteins exert specificity. To identify candidate protein interactors of HOXA13, we created and screened an E11.5–E12.5, distal limb bud yeast two-hybrid prey library. Among the interactors, we isolated the BMP-signaling effector Smad5, which interacted with the paralogous HOXD13 but not with HOXA11 or HOXA9, revealing unique interaction capabilities of the AbdB-like HOX proteins. Using deletion mutants, we determined that the MH2 domain of Smad5 is necessary for HOXA13 interaction.

This is the first report demonstrating an interaction between HOX proteins and the MH2 domain of Smad proteins. HOXA13 and HOXD13 …

First Confirmed Breeding Of The Rock Wren In Minnesota, Philip C. Chu

Biology Faculty Publications

No abstract provided.

Predator- And Competitor-Induced Plasticity: How Changes In Foraging Morphology Affect Phenotypic Trade-Offs, Rick A. Relyea, Josh R. Auld

Biology Faculty Publications

No abstract provided.

Myod Targets Chromatin Remodeling Complexes To The Myogenin Locus Prior To Forming A Stable Dna-Bound Complex, Ivana L. De La Serna, Yasuyuki Ohkawa, Charlotte A. Berkes, Donald A. Bergstrom, Caroline S. Dacwag, Stephen J. Tapscott Fred Hutchinson Cancer Research Center, Anthony N. Imbalzano

Biology Faculty Publications

The activation of muscle-specific gene expression requires the coordinated action of muscle regulatory proteins and chromatin-remodeling enzymes. Microarray analysis performed in the presence or absence of a dominant-negative BRG1 ATPase demonstrated that approximately one-third of MyoD-induced genes were highly dependent on SWI/SNF enzymes. To understand the mechanism of activation, we performed chromatin immunoprecipitations analyzing the myogenin promoter. We found that H4 hyperacetylation preceded Brg1 binding in a MyoD-dependent manner but that MyoD binding occurred subsequent to H4 modification and Brg1 interaction. In the absence of functional SWI/SNF enzymes, muscle regulatory proteins did not bind to the myogenin promoter, thereby providing …

Seasonal Changes In Composition Of Lipid Stores In Migratory Birds: Causes And Consequences, Barbara J. Pierce, Scott R. Mcwilliams

Biology Faculty Publications

It is well established that birds use fat stores to primarily fuel migration; however, few studies have focused on the causes and consequences of observed seasonal changes in fatty acid composition of fat stores in birds. We propose and test two hypotheses that address the causes of these seasonal changes in composition of fat stores: (1) diet composition determines fatty acid composition of fat stores, and (2) birds selectively metabolize and store certain fatty acids during migration in lieu of changing their diet. When we offered Red-eyed Vireos (Vireo olivaceous) choices between diets that differed only in fatty acid composition, …

The Biology Of Canadian Weeds. 131. Polygonum Aviculare L., Mihai Costea, François J. Tardif

Biology Faculty Publications

A review and assessment of biological information as well as personal data are provided for Polygonum aviculare in Canada. The species has been revised taxonomically and the six subspecies that occur in Canada are presented. Three of the subspecies, P. aviculare subsp. aviculare, P. aviculare subsp. neglectum and P. aviculare subsp. depressum are weeds introduced to Canada from Europe. A fourth subspecies, P. aviculare subsp. buxiforme is apparently native to North America. The geographical distribution of the latter four subspecies is very wide. Plants exhibit a high phenotypic plasticity and genetic variability, and they easily adapt to a multitude …

Investigations Of Migratory Bull Trout (Salvelinus Confluentus) In Relation To Fish Passage At Albeni Falls Dam, Allan T. Scholz, Holly J. Mclellan, David R. Geist, Richard S. Brown, United States Department Of The Army Corps Of Engineers, Seattle District, Eastern Washington University

Biology Faculty Publications

Final report prepared for the United States Department of the Army Corps of Engineers, Seattle District. Contract No. DACW68-02-D-001

Judicious Use Of Multiple Hypothesis Tests, Paul J. Roback, Robert A. Askins

Biology Faculty Publications

When analyzing a table of statistical results, one must first decide whether adjustment of significance levels is appropriate. If the main goal is hypothesis generation or initial screening for potential conservation problems, then it may be appropriate to use the standard comparisonwise significance level to avoid Type 2 errors (not detecting real differences or trends). If, however, the main goal is rigorous testing of a hypothesis, then an adjustment for multiple tests is needed. To control the familywise Type 1 error rate (the probability of rejecting at least one true null hypothesis), sequential modifications of the standard Bonferroni Method, such …

Bloodroot Pollination: Bet-Hedging In Uncertain Times, W. John Hayden

Biology Faculty Publications

“Hurry up and wait.” The phrase that epitomizes life in the military or any other large, bureaucratic, organization, applies surprisingly well to bloodroot and similar ephemeral wildflowers. Each year these plants race to flower as early as possible to assure sufficient time for fruits to ripen and seeds to mature while sunshine is abundant at the forest floor, for all too soon the forest floor will be draped in shadows cast by the trees’ leafy canopy. Ephemerals do everything quickly: sprout, grow, flower, disperse seeds, and re-enter dormancy. But flowering in very early spring can be risky. Some days will …

Two Purified Domains Of Telomerase Reverse Transcriptase Reconstitute Sequence-Specific Interactions With Rna, C. M. O'Connor, Cary K. Lai, Kathleen Collins

Biology Faculty Publications

Telomerase reverse transcriptase (TERT) and telomerase RNA (TER) function together to create a uniquely specialized polymerase. Here we have described for the first time domains of bacterially expressed Tetrahymena TERT that interacted directly with TER in the absence of assembly chaperones. We used quantitative binding assays to define TER sequence requirements for recognition by the high affinity RNA binding domain and an independent N-terminal RNA interaction domain. The TERT RNA binding domain and N-terminal RNA interaction domain had distinct, nonoverlapping requirements for TER sequence and structure that together accounted for all of the sites of TER contact inferred for full-length …

Intra-Guild Compensation Regulatesspecies Richness In Desert Rodents, J. Goheen, Ethan P. White, S.K. Morgan Ernest, J. H. Brown

Biology Faculty Publications

Evidence from numerous studies suggests that species richness is an emergent property of local communities. The maintenance of species richness, despite changes in species composition and environmental conditions, requires compensatory colonization and extinction events with species coming from a regional pool. Using long-term data from a rodent community in the Chihuahuan Desert, we use randomization methods to test the null hypothesis that changes in species richness occur randomly. We find that the dynamics of species richness differ significantly from a random process, and that these nonrandom dynamics occur largely within the most speciose guild. Finally, we propose a general framework …

Evidence For A General Species Time Arearelationship, P. B. Adler, Ethan P. White, W. K. Lauenroth, D. M. Kaufman, A. Rassweiler, J. A. Rusak

Biology Faculty Publications

The species-area relationship (SAR) plays a central role in biodiversity research, and recent work has increased awareness of its temporal analog, the species-time relationship (STR). Here we provide evidence for a general species-time-area-relationship (STAR), in which species number is a function of the area and time span of sampling, as well as their interaction. For eight assemblages ranging from lake zooplankton to desert rodents, this model outperformed a sampling-based model and two simpler models in which area and time had independent effects. In every case the interaction term was negative, meaning that rates of species accumulation in space decreased with …

Biphasic Functions Of The Kinase-Defective Ephb6 Receptor In Cell Adhesion And Migration, Hiroshi Matsuoka, Hiroya Obama, Meghan Kelly, Toshimitsu Matsui, Masaru Nakamoto

Biology Faculty Publications

EphB6 is a unique member in the Eph family of receptor tyrosine kinases in that its kinase domain contains several alterations in conserved amino acids and is catalytically inactive. Although EphB6 is expressed both in a variety of embryonic and adult tissues, biological functions of this receptor are largely unknown. In the present study, we examined the function of EphB6 in cell adhesion and migration. We demonstrated that EphB6 exerted biphasic effects in response to different concentrations of the ephrin-B2 ligand; EphB6 promoted cell adhesion and migration when stimulated with low concentrations of ephrin-B2, whereas it induced repulsion and inhibited …

The Flood Pulse In A Semi-Arid Riparian Forest:Metabolic And Biogeochemical Responses To Inter-Flood Interval, H. M. Valett, Michelle A. Baker, J. A. Morrice, C. S. Crawford, M. C. Molles, C. N. Dahm, D. L. Moyer, J. R. Thibault

Biology Faculty Publications

Flood pulse inundation of riparian forests alters rates of nutrient retention and organic matter processing in the aquatic ecosystems formed in the forest interior. Along the Middle Rio Grande (New Mexico, USA), impoundment and levee construction have created riparian forests that differ in their inter-flood intervals (IFIs) because some floodplains are still regularly inundated by the flood pulse (i.e., connected), while other floodplains remain isolated from flooding (i.e., disconnected). This research investigates how ecosystem responses to the flood pulse relate to forest IFI by quantifying nutrient and organic matter dynamics in the Rio Grande floodplain during three years of experimental …

North American Watersnakes: A Natural History, Alan H. Savitzky

Biology Faculty Publications

No abstract provided.