Life Sciences Commons^™

Spiderwort Is Vnps Wildflower Of The Year, W. John Hayden

Biology Faculty Publications

The VNPS 2008 Wildflower of the Year (WOY) is spiderwort (Tradescantia virginiana). This herbaceous perennial plant occurs throughout much of the eastern portion of the U.S. and is widespread in Virginia. Spiderwort blooms from April to July. The small flowers occur in clusters at the ends of the stems, atop several elongate bracts. Flowers have three petals that range from purple to rose or, rarely, white. Densely hairy stamens provide, perhaps, the easiest way to recognize spiderworts. Also, stalks of spent flowers droop below the flower cluster yielding an aspect reminiscent of spindly spider legs.

Leptodactylus Cunicularius Sazima And Bokermann Rabbit-Burrow Frog, W. R. Heyer, M. M. Heyer, Rafael O. De Sá

Biology Faculty Publications

Adult Leptodactylus cunicularius are moderately small. The head is longer than wide and the hind limbs are long (Table 1; Heyer and Thompson 2000 provided definitions of adult size and leg length categories for Leptodactylus). Male vocal sacs are internal, not externally expanded. The snout is protruding, not sexually dimorphic. Male forearms are not hypertrophied and males lack asperities on the thumbs and chest. The dorsum is variegated with small, often confluent, spots and blotches. There is a very thin interrupted mid-dorsal light stripe (pinstripe). Usually, there is a noticeable light, irregular, elongate, mid-dorsal blotch in the scapular region. …

Is The Amphibian Tree Of Life Really Fatally Flawed?, Darrel R. Frost, Taran Grant, Julian Faivovich, Raoul H. Bain, Alexander Haas, Celio F.B. Haddad, Rafael O. De Sá, Et Al.

Biology Faculty Publications

Wiens (2007, Q. Rev. Biol. 82, 55–56) recently published a severe critique of Frost et al.'s (2006, Bull. Am. Mus. Nat. Hist. 297, 1–370) monographic study of amphibian systematics, concluding that it is “a disaster” and recommending that readers “simply ignore this study”. Beyond the hyperbole, Wiens raised four general objections that he regarded as “fatal flaws”: (1) the sampling design was insufficient for the generic changes made and taxonomic changes were made without including all type species; (2) the nuclear gene most commonly used in amphibian phylogenetics, RAG-1, was not included, nor were the morphological characters that had justified …

Assessment Of Synaptic Function During Short-Term Facilitation In Motor Nerve Terminals In The Crayfish, Mohati Desai-Shah, Kert Viele, G. Sparks, J. Nadolski, B. Hayden, V. K. Srinivasan, Robin L. Cooper

Biology Faculty Publications

An enhanced buildup of [Ca²⁺]i occurs during short-term facilitation (STF) at the crayfish neuromuscular junction (NMJ). As a model system, this NMJ allows discrete postsynaptic quantal events to be counted and characterized in relation to STF. Providing 10 pulses, at 20 and 40Hz, we monitored postsynaptic quantal events over a discrete region of a nerve terminal with a focal macropatch electrode. Characteristics of quantal events were clustered into groups by peak amplitude and time to the peak amplitude. Since the synapses at this NMJ have varied spacing of active zones, number of active zones and synaptic size, the …

Presynaptic Depression In Phasic Motor Nerve Terminals And Influence Of 5-Ht On Vesicle Dynamics, A. F. M. Johnstone, S. S. Kellie, Robin L. Cooper

Biology Faculty Publications

Synaptic depression that is induced by electrical stimulation of the glutamatergic neuromuscular junction (NMJ) of the crayfish can be offset by recruitment of vesicles from a presynaptic reserve pool. This recruitment occurs following treatment of the NMJ with serotonin (5-HT), which results in a delay in the onset of synaptic depression induced by high frequency stimulation. The results of this study demonstrate that the releasable vesicles are insufficiently replenished during high frequency stimulation and that the readily releasable pool of vesicles (RRP) can be enhanced by the reserve pool (RP) in the presence of 5-HT. Anatomical visualization of vesicular pools …

Optimal Data Partitioning And A Test Case For Ray-Finned Fishes (Actinopterygii) Based On Ten Nuclear Loci, Chenhong Li, Guoqing Lu, Guillermo Orti

Biology Faculty Publications

Data partitioning, the combined phylogenetic analysis of homogeneous blocks of data, is a common strategy used to accommodate heterogeneities in complex multilocus data sets. Variation in evolutionary rates and substitution patterns among sites are typically addressed by partitioning data by gene, codon position, or both. Excessive partitioning of the data, however, could lead to overparameterization; therefore, it seems critical to define the minimum numbers of partitions necessary to improve the overall fit of the model. We propose a new method, based on cluster analysis, to find an optimal partitioning strategy for multilocus protein-coding data sets. A heuristic exploration of alternative …

Genotoxic Stress-Induced Expression Of P53 And Restoration Of Apoptosis In Leukemic Clam Hemocytes With Cytoplasmically Sequestered P53, Stefanie Boettger, Emily Jerszyk, Ben Low, Charles Walker

Biology Faculty Publications

No abstract provided.

2008 Wildflower Of The Year: Virginia Spiderwort, Tradescantia Virginiana, W. John Hayden

Biology Faculty Publications

Spiderwort is an herbaceous perennial that arises from a cluster of rather stout overwintering roots. Stems may be solitary or more commonly clumped, and usually grow unbranched, reaching heights up to 40 cm tall. Stems are smooth or bear scattered short hairs. Leaves are 2—5 per stem, attached by means of a leaf sheath that is 13 cm long. Leaf blades are dull green, elongate, ending in a gradually tapered tip, flat or keeled, smooth (without hairs), and 1—3.5 dm long by 0.5—2.5 cm wide. Flowers occur in tight clusters located at the stem apex; bracts similar to the leaves …

Chihuahuan Desertkangaroo Rats: Nonlinear Effects Of Population Dynamics, Competition, And Rainfall, M. Lima, S.K. Morgan Ernest, J. H. Brown, A. Belgrano, N. C. Stenseth

Biology Faculty Publications

Using long-term data on two kangaroo rats in the Chihuahuan Desert of North America, we fitted logistic models including the exogenous effects of seasonal rainfall patterns. Our aim was to test the effects of intraspecific interactions and seasonal rainfall in explaining and predicting the numerical fluctuations of these two kangaroo rats. We found that logistic models fit both data sets quite well; Dipodomys merriami showed lower maximum per capita growth rates than Dipodomys ordii, and in both cases logistic models were nonlinear. Summer rainfall appears to be the most important exogenous effect for both rodent populations; models including this variable …

On The Relationship Between Mass And Diameter Distributions In Tree Communities, J. C. Stegen, Ethan P. White

Biology Faculty Publications

It has been suggested that frequency distributions of individual tree masses in natural stands are characterized by power-law distributions with exponents near -3/4, and that therefore tree communities exhibit energetic equivalence among size classes. Because the mass of trees is not measured directly, but estimated from diameter, this supposition is based on the fact that the observed distribution of tree diameters is approximately characterized by a power-law with an exponent -2. Here we show that diameter distributions of this form are not equivalent to mass distributions with exponents of -3/4, but actually to mass distributions with exponents of -11/8. We …

Functional Gene Losses Occur With Minimal Size Reduction In The Plastid Genome Of The Parasitic Liverwort Aneura Mirabilis, N. J. Wickett, Y. Zhang, S. K. Hansen, J. M. Roper, J. V. Kuehl, S. A. Plock, B. Goffinet, Paul G. Wolf, C. W. Depamphilis, Jeffrey L. Boore

Biology Faculty Publications

Aneura mirabilis is a parasitic liverwort that exploits an existing mycorrhizal association between a basidiomycete and a host tree. This unusual liverwort is the only known parasitic seedless land plant with a completely nonphotosynthetic life history. The complete plastid genome of A. mirabilis was sequenced to examine the effect of its nonphotosynthetic life history on plastid genome content. Using a partial genomic fosmid library approach, the genome was sequenced and shown to be 108,007 bp with a structure typical of green plant plastids. Comparisons were made with the plastid genome of Marchantia polymorpha, the only other liverwort plastid sequence available. …

Conservation Of Selection On Matk In Ferns Following An Ancient Loss Its Flanking Intron, A. M. Duffy, S. A. Kelchner, Paul G. Wolf

Biology Faculty Publications

The chloroplast gene trnK and its associated group II intron appear to be absent in a large and ancient clade that includes nearly 90% of fern species. However, the maturase protein encoded within the intron (matK) is still present and located on the boundary of a large-scale inversion. We surveyed the chloroplast genome sequence of clade-member Adiantum capillus-veneris for evidence of a still present but fragmented trnK intron. Lack of signature structural domains and sequence motifs in the genome indicate loss of the trnK intron through degradation in an ancestor of the clade. In plants, matK preferentially catalyzes splicing of …

Immunomodulatory Properties Of A Viral Homolog Of Human Interleukin-10 Expressed By Human Cytomegalovirus During The Latent Phase Of Infection, C Jenkins, W Garcia, M J. Godwin, Juliet V. Spencer, J Lewis Stern, Allison Abendroth, Barry Slobedman

Biology Faculty Publications

Human cytomegalovirus (HCMV) establishes a latent infection in hematopoietic cells, from which it can reactivate to cause significant disease in immunocompromised individuals. HCMV expresses a functional homolog of the immunosuppressive cytokine interleukin-10 (termed cmvIL-10), and alternate splicing of the cmvIL-10 transcript results in expression of a latency-associated cmvIL-10 transcript (LAcmvIL-10). To determine whether LAcmvIL-10 encodes immunosuppressive functions, recombinant LAcmvIL-10 protein was generated, and its impact on major histocompatibility complex class II (MHC-II) expression was examined on granulocyte macrophage progenitor cells (GM-Ps) and monocytes. LAcmvIL-10 (and cmvIL-10) downregulated MHC-II on the surfaces of both cell types. This downregulation was associated with …

Estimation Of Submarine Groundwater Discharge From Bulk Ground Electrical Conductivity Measurements, Thomas Stieglitz, John Rapaglia, Henry Bokuniewicz

Biology Faculty Publications

The utility of bulk ground conductivity (BGC) measurements in the estimation of submarine groundwater discharge (SGD) was investigated at four sites covering a range of hydrogeological settings, namely Cockburn Sound (Australia); Shelter Island (USA); Ubatuba Bay (Brazil) and Flic-en-Flac Bay (Mauritius). At each of the sites, BGC was surveyed in the intertidal zone, and seepage meters were used for direct measurements of SGD flow rates. In the presence of detectable salinity gradients in the sediment, a negative correlation between SGD and BGC was recorded. The correlation is site-specific and is dependent on both the type of sediment and the mixing …

Project Limulus: What Long-Term Mark/Recapture Studies Reveal About Horseshow Crab Population Dynamics In Long Island Sound, Mark Beekey, Jennifer Mattei

Biology Faculty Publications

Project Limulus is a long-term study of the population dynamics of the horseshoe crab population in Long Island Sound (LIS). We have tagged over 20,000 spawning adults from >20 beaches ranging from Greenwich to Stonington, CT since 1997. Cumulative recapture rates have reached 9%. On average 90% of the crabs are recaptured within a few miles of their original tag site within the first season. Between seasons, on average, 45% of crabs are recaptured within the same locality of where they were tagged. Of all recaptures, 99% of recaptured individuals are found within LIS. This past year we expanded the …

Occurrence And Biological Effect Of Exogenous Steroids In The Elkhorn River, Nebraska, Usa, Alan S. Kolok, Daniel D. Snow, Satomi Kohno, Marlo K. Sellin, Louis J. Guillette Jr.

Biology Faculty Publications

Recent studies of surface waters in North America, Japan, and Europe have reported the presence of steroidogenic agents as contaminants. The current study has three objectives: 1) to determine if steroidogenic compounds are present in the Elkhorn River, 2) to determine if sediments collected from the Elkhorn River can act as a source of steroidogenic compounds to aquatic organisms, and 3) to determine if site-specific biological effects are apparent in the hepatic gene expression of fathead minnows. Evidence was obtained using three approaches: 1) deployment of polar organic chemical integrative samplers (POCIS), 2) deployment of caged fathead minnows, and 3) …

Designation Of A Neotype For Leptodactylus Gracilis (Duméril And Bibron, 1840) (Amphibia: Leptodactylidae), Rafael O. De Sá, A. Dubois, A. Ohler

Biology Faculty Publications

The examination of the preserved specimens in the herpetological collection of the Museum National d'Histoire Naturelle, along with a review of the original literature, indicates that no extant specimen can be undoubtedly identified as the holotype of Leptodactylus gracilis (DumCri.l and Bibron, 1840). Furthermore, it revealed that the type locality recently assigned to this taxon is in error.

Regeneration Of Retinotectal Projections After Optic Tectum Removal In Adult Newts, Mitsumasa Okamoto, Hatsuki Ohsawa, Toshinori Hayashi, Katsushi Owaribe, Panagiotis A. Tsonis

Biology Faculty Publications

Purpose: When injured, the adult newt possesses the remarkable capability to regenerate tissues and organs with return of function and physiology. One example is the newt eye, in which regeneration can restore normal vision if the retina or lens has been removed. We wanted to examine how the retinotectal projections regenerate after removal of the brain’s optic tectum and establish this animal as a model for retinal projection as well as a central nervous system regeneration model.

Do The Size And Landscape Context Of Forest Openings Influence The Abundance And Breeding Success Of Shrubland Songbirds In Southern New England?, Robert A. Askins, Benjamin Zuckerberg, Leah Novak

Biology Faculty Publications

Early successional birds have declined in the northeastern United States due to the regeneration of forest on abandoned farm fields and the suppression of natural disturbances that once provided appropriate habitat. These species have become increasingly dependent on early successional habitats generated by such activities as timber harvesting. Recent approaches of timber harvesting, which range from single-tree harvesting to clearcutting, create forest openings of different sizes and configurations embedded in landscapes with different land use patterns. To assess the importance of forest openings created by timber harvesting for shrubland birds, we surveyed birds on 50m radius plots in 34 harvest …

A Non-Circadian Role For Clock-Genes In Sleep Homeostasis: A Strain Comparison, Paul Franken, Ryan Thomason, H. Craig Heller, Bruce F. O'Hara

Biology Faculty Publications

BACKGROUND: We have previously reported that the expression of circadian clock-genes increases in the cerebral cortex after sleep deprivation (SD) and that the sleep rebound following SD is attenuated in mice deficient for one or more clock-genes. We hypothesized that besides generating circadian rhythms, clock-genes also play a role in the homeostatic regulation of sleep. Here we follow the time course of the forebrain changes in the expression of the clock-genes period (per)-1, per2, and of the clock-controlled gene albumin D-binding protein (dbp) during a 6 h SD and subsequent recovery sleep in three inbred strains of mice for which …

Mutations Affecting A Putative Mutla Endonuclease Motif Impact Multiple Dna Mismatch Repair Functions, Naz Erdeniz, Megan Nguyen, Suzanne M. Deschênes, R. Michael Liskay

Biology Faculty Publications

Mutations in DNA mismatch repair (MMR) lead to increased mutation rates and higher recombination between similar, but not identical sequences, as well as resistance to certain DNA methylating agents. Recently, a component of human MMR machinery, MutLα, has been shown to display a latent endonuclease activity. The endonuclease active site appears to include a conserved motif, DQHA(X)₂E(X)₄E, within the COOH-terminus of human PMS2. Substitution of the glutamic acid residue (E705) abolished the endonuclease activity and mismatch-dependent excision in vitro. Previously, we showed that the PMS2-E705K mutation and the corresponding mutation in Saccharomyces cerevisiae were …

Vascular Flora Of Powhatan County, Virginia, Michael Austin Terry, W. John Hayden

Biology Faculty Publications

Powhatan County is a largely rural county of the Virginia piedmont currently experiencing exurban development pressure. Commercial pine forests occupy much of the land area; most natural vegetation occurs in various hardwood forests. Plant life is supported largely by soils derived from Proterozoic to Paleozoic metamorphic and igneous rocks, soils developed over Triassic basins, and riparian soils associated with the James and Appomattox Rivers. The annotated checklist is based on new collections gathered between September 2003 and August 2005, supplemented with records from regional herbaria and the Atlas of the Virginia Flora. Field work sampled at least 12 distinct community …

Fruit Quality And Consumption By Songbirds During Autumn Migration, Susan B. Smith, Kathleen H. Mcpherson, Jeffrey M. Backer, Barbara J. Pierce, David W. Podlesak, Scott R. Mcwilliams

Biology Faculty Publications

Seasonal fruits are an important food resource for small songbirds during autumn migration in southern New England. Therefore, conservation and management of important stopover sites used by migrating birds requires knowledge about nutritional requirements of songbirds and nutritional composition of commonly consumed fruits. We measured nutrient composition and energy density of nine common fruits on Block Island, Rhode Island, and conducted a field experiment to estimate consumption rates of three of these fruits by birds during autumn migration. Most common fruits on Block Island contained primarily carbohydrates (41.3–91.2% dry weight), and little protein (2.6–8.6%) and fat (0.9–3.7%), although three contained …

Eleutherodactylus Ridens (Pygmy Rainfrog) Predation, Tobias Eisenberg, Twan Leenders

Biology Faculty Publications

Workers of the large ponerine ant Paraponera clavata typically forage on small to medium-sized arthropods or collect pieces of plants or nectar but have been suspected of predating small vertebrates.

Description Of The Tadpole Of Leptodactylus Pustulatus Peters, 1870 (Anura: Leptodactylidae), Rafael O. De Sá, Reuber Brandão, Lorena Dall'ara Guimarães

Biology Faculty Publications

The external morphology and oral disc of the tadpole of Leptodactylus pustulatus Peters, 1870, are described and illustrated for Gosner stage 39. The internal oral anatomy was analyzed with SEM at Gosner stage 36 whereas chondrocranial anatomy is reported for Gosner stage 35. The overall characteristics do not depart from those known for the genus Leptodactylus and they particularly agree for those of the melanonotus species group. The labial tooth row formula is 2(2)/3. Observations are presented that suggest that L. pustulatus engages in larval parental care.

Resumo

São descritas a morfologia externa e o disco oral do girino de …

Comparative Functional Analysis Of Aquaporins/Glyceroporins In Mammals And Anurans, Carissa M. Krane, David L. Goldstein

Biology Faculty Publications

Maintenance of fluid homeostasis is critical to establishing and maintaining normal physiology. The landmark discovery of membrane water channels (aquaporins; AQPs) ushered in a new area in osmoregulatory biology that has drawn from and contributed to diverse branches of biology, from molecular biology and genomics to systems biology and evolution, and from microbial and plant biology to animal and translational physiology. As a result, the study of AQPs provides a unique and integrated backdrop for exploring the relationships between genes and genome systems, the regulation of gene expression, and the physiologic consequences of genetic variation. The wide species distribution of …

Identification And Characterization Of A Carlavirus Causing Veinal Necrosis Of Coleus, Dimitre S. Mollov, Maya C. Hayslett, Kari A. Eichstaedt, Noelle G. Beckman, Margery L. Daughtrey, Ben E. Lockhart

Biology Faculty Publications

A filamentous virus identified in coleus (Coleus x hybrida) in Minnesota and New York was found to cause veinal necrosis in coleus, although this symptom was observed only under certain conditions. The virus was transmitted readily by mechanical inoculation to coleus and Nicotiana spp. and was not transmitted by Myzus persicae. The particles of the coleus virus had a modal length of 640 nm and a single capsid protein with an estimated molecular mass of 34 kDa. The amino acid sequence of the coat protein region of the coleus virus genome had significant similarities only to the …

The E705k Mutation In Hpms2 Exerts Recessive, Not Dominant, Effects On Mismatch Repair, Suzanne M. Deschênes, Guy Tomer, Megan Nguyen, Naz Erdeniz, Nicole C. Juba, Natalia Sepúlveda, Jenna E. Pisani, R. Michael Liskay

Biology Faculty Publications

The hPMS2 mutation E705K is associated with Turcot syndrome. To elucidate the pathogenesis of hPMS2-E705K, we modeled this mutation in yeast and characterized its expression and effects on mutation avoidance in mammalian cells. We found that while hPMS2-E705K (pms1-E738K in yeast) did not significantly affect hPMS2 (Pms1p in yeast) stability or interaction with MLH1, it could not complement the mutator phenotype in MMR-deficient mouse or yeast cells. Furthermore, hPMS2-E705K/pms1-E738K inhibited MMR in wild-type (WT) mammalian cell extracts or yeast cells only when present in excess amounts relative to WT PMS2. Our results strongly suggest that hPMS2-E705K is a …

Improving Natural History Research With Image Analysis: The Relationship Between Skin Color, Sex, Size And Stage In Adult Red-Spotted Newts, Andrew K. Davis, Kristine L. Grayson

Biology Faculty Publications

Natural history researchers are increasingly using digital cameras and computer software to measure their study animals. Adult Red-spotted Newts (Notophthalmus viridescens viridescens) are known to display a range of skin colors, from brown to green, but it has not been possible to quantify this variation until the advent of image analysis technology. We used an image analysis approach to compare skin color between sexes, across a range of sizes, and between aquatic and post-breeding (emigrating to the terrestrial habitat) stage adult newts. From 232 individuals (53% male, 47% female) we documented a wide but subtle range of skin …

The Tadpole Of Eupsophus Queulensis (Anura, Cycloramphidae), Diana R. Cárdenas-Rojas, Alberto Veloso, Rafael O. De Sá

Biology Faculty Publications

The genus Eupsophus is characterized by endotrophic larvae that inhabit water-filled cavities. The larvae feed from large yolk reserves during metamorphosis. The external morphology has been described for four of the ten known species and data on larval chondrocranial morphology are available only for one. We describe the extema1 morphology, oral disc and chondrocranial anatomy of the larvae of Eupsophus queulensis. The characteristics of E. queulensis tadpoles are compared with those of other Eupsophus larvae.