Life Sciences Commons^™

Assessing Plant Community Structure In The Upper Las Vegas Wash Conservation Transfer Area, Nevada: The Influence Of Biotic And Abiotic Variables, Amy A. Croft

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ecological communities are complex, the structure of which is composed of interactions between multiple community characteristics and the abiotic and biotic factors shaping them. Because of this complexity, ecological studies are generally limited in scope and size, often dissecting communities into their component parts to examine them piece by piece. While this might be the most practical method to study communities, this approach often neglects other characteristics that, with their inclusion, would provide a more complete picture of community ecology. The studies described in this dissertation were conducted in an effort to synthesize the complexity that is inherent in ecological …

Refining Methods For Quantifying Macroinvertebrate Estimates Of Preference For Use In Stream Bioassessments, Ellen F. Wakeley Tomlinson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Two-thirds of United States stream length is in either fair or poor biological condition. However, we do not yet have reliable, quantitative tools to diagnose site-specific causes of biological impairment. One way to diagnose causes of impairment is to compare the environmental tolerances or preferences of the taxa expected at a site to those of the observed community. Stream ecologists have derived tolerance values (TVs) from field data for use in causal analysis, but inconsistencies across studies cast doubt on the accuracy of these TVs. Published TVs may not agree with one another for several reasons, including: differences in the …

Balancing Agricultural And Urban Water Needs In Transitioning Arid Landscapes, Bonnie Roos

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In the arid western United States (U.S.), population expansion is dependent on water supply. With the majority of the water being consumed in agriculture, municipalities often obtain water supply needed for growth from agriculture. This exchange occurs through agricultural-to-urban water right transfers. This trend drives the question of how to strike a balance between agricultural and urban water needs in rapidly growing arid regions.

Utah, located in the Intermountain region of the western U.S., is a state with a rapidly growing population and limited water supply. This research focuses on existing challenges and opportunities for balancing expanding municipal development and …

Relationships Between Riparian Vegetation, Hydrology, Climate And Disturbance Across The Western United States, Nathaniel Hough-Snee

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Flow regime, the magnitude, duration and timing of streamflow, controls the development of floodplain landforms on which riparian vegetation communities assemble. Streamflow scours and deposits sediment, structures floodplain soil moisture dynamics, and transports propagules. Flow regime interacts with environmental gradients like climate, land-use, and biomass-removing disturbance to shape riparian plant distributions across landscapes. These gradients select for groups of riparian plant species with traits that allow them to establish, grow, and reproduce on floodplains – riparian vegetation guilds. Here I ask, what governs the distributions of groups of similar riparian plant species across landscapes? To answer this question, I identify …

Spider Aggregate Glue Sequence Characterization And Expression, Kyle Berg

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Orb-weaving spiders create a glue which is secreted onto the web to capture and retain insects. This glue is made from aggregate protein. Aggregate glue is sticky when wet and can stretch far when pulled at slow speeds, and pull back with a greater force if pulled at high speeds which helps it achieve its purpose as the adhesive that keeps insects in the web. These features also make it an attractive target for applications such as a surgical glue or underwater adhesive. Unfortunately, very little is known about the aggregate glue gene, and knowledge of the genetic sequence is …

Quantum Mechanical Studies Of Charge Assisted Hydrogen And Halogen Bonds, Binod Nepal

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Like cement bridges one brick to another, noncovalent forces also bridge two or more molecules together to form a molecular crystal or molecular cluster. Although weaker than the covalent bond, the existence of noncovalent forces can be seen everywhere from liquid water to construction of complex biomolecules like DNA, RNA, proteins etc. An introduction of suitable charge; positive or negative, on the binding units can increase the strength of noncovalent interaction by several orders of magnitude. The primary aim of this dissertation is to explore some fundamental properties of such charge assisted noncovalent interactions which will be helpful for the …

Identifying And Reducing Risk Of The Female Athlete Triad In Division I Athletes, Jennifer Day

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Physically active females, or female athletes, are at risk for the condition known as the female athlete triad (Triad). The Triad is made up of three components that are distinctly separate, but intertwined: consuming inadequate energy for how much they are exercising, poor bone health, and problems with their menstrual periods. When female athletes don’t consume enough energy for how much they exercise, there can be hormonal imbalances, causing the body to conserve energy from some important functions including menstruation, and increased bone turnover resulting in a higher risk of stress fractures and early osteoporosis. Female athletes at risk for …

Soil Nutrient Cycling And Water Use In Response To Orchard Floor Management In Stone-Fruit Orchards In The Intermountain West, Catherine Mae Culumber

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An organic peach orchard trial evaluated the effectiveness of different organic management approaches to enhance soil quality and conserve water without compromise to fruit tree growth and fertility. Two tree-row treatments: ‘straw mulch’ (Triticum aestivum L.) and ‘living mulch’ (Lobularia maritima (L.) Desv.) were tested in combination with two alleyway groundcovers: ‘grass’ (Festuca rubra L. with Lolium perenne L.) and a legume, ‘Birdsfoot trefoil’ (Lotus corniculatus L.). The novel treatments were compared with tillage and weed fabric tree-rows with grass alleyways. After mowing, cuttings from the trefoil alleyway were deposited into tree-rows, which provided additional N …

Salt Tolerance Of Forage Kochia, Gardner's Saltbush, And Halogeton: Studies In Hydroponic Culture, Joseph Sagers

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Halogeton (Halogeton glomeratus) is a halophytic, invasive species that displaces Gardner’s saltbush (Atriplex gardneri) on saline rangelands. Forage kochia (Bassia prostrata) is a potential species to rehabilitate these ecosystems. This study compared the salinity tolerance of these species and tall wheatgrass (Thinopyrum ponticum) and alfalfa (Medicago sativa). Plants were evaluated for 28 days in hydroponics where they were maintained at 0, 150, 200, 300, 400, 600, and 800 mM NaCl. Shoot growth and ion accumulation were determined. Alfalfa and tall wheatgrass were severely affected by salt with both species’ shoot …

Increasing The Sustainability Of Utah Farms By Incorporating Quinoa As A Novel Crop And Protecting Soil Health, Kristine R. Buckland

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Most of the western United States faces increasing water shortages in the coming years, that will present a major challenge for maintaining sustainable farms. Incorporating an alternative crop that is well adapted to projected changes in climate could be a successful approach to increasing the sustainability of farms in the region. Quinoa, Chenopodium quinoa Willd., may be an ideal alternative crop to meet the demands of the Intermountain West. Before widespread adoption of this novel crop can occur, best management strategies need to be documented. This paper provides research on cropping systems, irrigation rates, and weed competition with quinoa. Additionally, …

Short Term Effectiveness Of High Density Large Woody Debris In Asotin Creek As A Cheap And Cheerful Restoration Action, Reid Camp

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In response to human impacts, river restoration and rehabilitation actions have become a priority in the United States. In the Pacific Northwest, most restoration actions are focused on repairing degraded freshwater habitat to increase or improve Pacific salmonid production. However, traditional river restoration actions remained largely unchanged for over 100 years despite a lack of definitive evidence that the actions were effective. More recently, there has been a surge in process-based restoration actions, which aim to reestablish the physical and biological processes that maintain fluvial and floodplain environments by targeting the root causes of degradation in a watershed. Cheap and …

The Impact Of The Updated National School Lunch Program Meal Standards On Fruit And Vegetable Consumption Among Elementary School Students In Cache County Utah, Jillian C. Fox

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Due to the short time the updated National School Lunch Program standards have been in place since fall of 2012, few research studies have explored what effect these new standards have had on fruit and vegetable (F/V) consumption, particularly among elementary school students. Because the new standards require schools to offer students more F/V than before, researchers are interested to know if F/V consumption has indeed increased.

The participants in the study were enrolled in a program to motivate students to eat more F/V – the Food Dudes program. The results of the data analysis found that most students, regardless …

A Century Of Geomorphic Change Of The San Rafael River And Implications For River Rehabilitation, Stephen T. Fortney

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Suspended-load rivers are subject to rapid geomorphic changes. In particular during the Holocene Epoch, arroyos of the Colorado Plateau experienced several periods of rapid erosion and aggradation. The most recent period of entrenchment occurred around the turn of the 20th century. The mechanisms responsible for the modern period of aggradation that has followed the most recent period of entrenchment have not been well documented. The research presented in this thesis reveals the mechanisms responsible for modern alluviation of the San Rafael River, which drains the Colorado Plateau

The lower 87 km of the San Rafael River, which enters the Green …

Modeling The Ecological Consequences Of Visitor Behavior In Off-Trail Areas Of Dispersed Recreation Use, Ashley L. D'Antonio

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Parks and protected areas are often created to protect important social, ecological, or cultural resources from impairment. In the United States, a large majority of these parks and protected areas are also public land where recreational activities such as hiking or scenic driving are allowed. Managers of many parks and protected areas must therefore try to protect resources while also allowing for recreation use that may put these resources at risk for damage. The field of recreation ecology is interested in understanding how recreation use in parks and protected areas can sometimes cause ecological impacts to vegetation, soil, wildlife, water, …

Virulence Evolution Of Fungal Pathogens In Social And Solitary Bees With An Emphasis On Multiple Infections, Ellen G. Klinger

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The health of pollinators, especially bees, is of the utmost importance to success of many agricultural ecosystems. Microorganisms can cause diseases in bees; such microbes are pathogenic. The ability of a pathogen to cause harm to its host (such as a bee) is termed its virulence. Studying the evolution of different levels of virulence can lead researchers to a better understanding of pathogens, and potentially predict how much harm a pathogen can cause in the future. We studied the evolution of virulence levels for a fungal disease of bees. This group of fungi is composed of 28 species, and some …

Participant Perceptions Of Range Rider Programs Used To Mitigate Wolf-Livestock Conflicts In The Western United States, Molly Parks

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Range Rider Programs (RRPs) are one example of a proactive non-lethal tool that has been implemented in western United States to mitigate gray wolf (Canis lupus) and livestock conflicts. Because RRPs are an emerging non-lethal tool that little is known about, I selected a qualitative research approach to examine participant perceptions to further contemporary understanding of how these efforts are implemented and potential benefits. I surveyed 51 participants from 17 Range Rider Programs (RRPs) in Montana, Washington, and Oregon to determine participant perceptions regarding effectiveness of RRPs as a non-lethal approach to mitigate wolf-conflicts.

I developed a RRPs typology based …

Examining The Association Between Children's Fruit And Vegetable Intake At And Away From School, Velarie Yaa Ankrah Ansu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Several school-based interventions aimed at increasing fruit and vegetables (FV) intake among children have demonstrated success in short-term interventions. The Fit Game is a school-based intervention aimed at encouraging children to consume increasing amounts of FV during a game, which is a narrative. Just as children are being encouraged to eat FV at school, so is it equally important for them to eat FV at home. Parents strongly influence the amount of FV children consume at home. The aim of this thesis is to examine associations between factors that influence consumption of fruits and vegetables at and away from school …

Structural And Compositional Patterns In Forest Communities In The Intermountain West Across Multiple Scales, Marcella A. Windmuller-Campione

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The United States Department of Agriculture (USDA) strives to use science-based research to both protect and enhance the management of natural resources. From this overarching goal, the USDA has a specific objective to protect the health and sustainability of forest and rangeland ecosystems. Based on this specific objective, an Advisory Board of natural resource scientists within the Quinney College of Natural Resources (QCNR) was awarded a National Institute of Food and Agricultural (NIFA) grant to train two PhD and two MS students. Their research would focus on managing for resilient forest ecosystem in the Intermountain West.

With input from the …

Ecology, Behavior And Taxonomy Of Anurans From Brazil's Atlantic Forest, Rodrigio Barbosa Ferreira

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Anura is a diverse group with more than 7382 species described, which represents 88% of the species belonging to the Class Amphibia. Anurans are among the first organisms to be affected by environmental stressors, so when they show decline in the wild, it is a warning to other species, including humans. It is alarming that one-third of the world’s anurans are facing extinction. Following the same trend, a substantive portion of the 988 recognized species of the Atlantic Forest have suffered population declines and local extinctions, attributed primarily to habitat changes.

Despite the unique life history characteristics that make amphibians …

Matching Watershed And Otolith Chemistry To Establish Natal Origin Of An Endangered Desert Lake Sucker, Deanna Strohm

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Like many native endemic desert freshwater fish species, the June Sucker (Chasmistes liorus) is currently listed as endangered. Managers have increasingly turned to habitat restoration as a key component to recovery plans. For endangered species, one of the primary outcomes of habitat restoration is that it should result in successful reproduction and recruitment of individuals into the adult population. Confirmation of natural recruitment as a function of habitat restoration can only be achieved by establishing natal origins.

Recent research has proven the validity of otolith microchemistry, a technique that analyzes small quantities of elements, to trace potamodromous fish …

Effects Of Environmental Water Transfers On Stream Temperatures, Logan Elmore

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Low streamflows and warm stream temperatures, caused mainly from agricultural diversions, currently limit available habitat and productivity of trout, including native Lahontan cutthroat trout in Nevada’s Walker River Basin. Environmental water purchases, which transfer water from willing sellers to instream uses (i.e for fish), are being evaluated to improve instream habitat. To determine which environmental water purchases to prioritize, this study was undertaken to build a computer model in order to simulate stream temperatures under differing environmental water transfer scenarios. Model runs simulate a range of environmental water transfers at major diversions and reservoirs throughout the Walker River Basin. Results …

Effects Of Beef Finishing Diets And Muscle Type On Meat Quality, Fatty Acids And Volatile Compounds, Arkopriya Chail

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Consumer evaluation, proximate data, Warner-Bratzler shear force (WBSF), fatty acid (FA) composition and volatile compounds were analyzed from the ribeye steaks (LT) finished on conventional feedlot (FL) and forages, including a perennial legume, birdsfoot trefoil (BFT; Lotus corniculatus), and a grass, meadow brome (Bromus riparius Rehmann, Grass). Representative retail forage (USDA Certified Organic Grass-fed, COGF) and conventional beef (USDA Top Choice, TC) were investigated (n = 6) for LT. Additionally, the effects of diet on round (GM) and chuck (TB) muscles FL, BFT and Grass were explored. Forage-finished beef was less liked in most of the affected …

Analytical Comparison Of Bovine Parentage Single Nucleotide Polymorphisms, Joshua Jeffrey Dallin

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Often on cattle operations and dairy farms, where multiple bulls are exposed to cows either by live cover or artificial insemination, error can be present in parentage record keeping for breed registries or production use. Research has evolved to the integration of using single nucleotide polymorphisms (SNPs) to answer questions where cases of unknown parentage may exist. With the evolution of the research, differentiated panels have been created specifically for parentage analysis. Our objective was to complete an analytical comparison between two specific panels, a proven 88 parentage SNP panel and a recently developed 25 SNP panel. A smaller panel …

Factors Influencing Farmers' Utilization Of Auto-Guidance Technology In Northern Utah, Thomas A. Bleazard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Few studies have documented the use of auto-guidance technologies in the western United States. This study sought to discover farmers’ training preferences and what drives adoption of auto-guidance systems in northern Utah. A presentation of auto-guidance systems was made to crop school attendees. Afterwards an auto-guidance simulator was used to demonstrate to participants how these systems worked and let them engage in an experiential learning experience with laptops. A survey was administered to collect information on farmers’ training preferences and use of auto-guidance technologies. Results of the survey showed that farmers have a large interest in learning about auto-guidance technologies, …

Annotation Tools For Multivariate Gene Set Testing Of Non-Model Organisms, Russell K. Banks

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Microarray chip technology enables researchers to obtain measures of gene activity for essentially all genes in an organism. After grouping genes into biologically meaningful sets, researchers employ certain statistical tests to identify which gene sets (biological processes) show different levels of activity across different treatment groups. The idea is to identify which biological processes are significantly affected by a certain treatment/condition in a given organism.

Non-model organisms (such as sheep) are not widely studied so gene set membership information is not always readily accessible. This thesis work utilizes two microarray studies involving sheep to provide researchers with working examples of …

Biogeography, Population Genetics, And Community Structure Of North American Bumble Bees, Jonathan Berenguer Koch

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In 2011, several wild North American bumble bee pollinator species were reported to have declined by up to 96% in relative abundance in comparison to historic estimates, and one species was speculated to be extinct. None of these species have yet been documented to have recovered from these declines and additional species are now suggested to be at risk. Imperiled species in particular show increased specificity to narrow climatic envelopes, as opposed to putatively stable species. My dissertation describes patterns of population genetic diversity, structure, and gene flow pathways associated with climate variation and historical biogeography of bumble bees distributed …

The Effects Of Social Norms Feedback On Fruit And Vegetable Consumption And Skin Carotenoids Among College Students, Troy A. Bailey

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Fruit and vegetable consumption, which has been shown to have a protective effect against chronic diseases, often decreases during the first few years of college. Implementing public health interventions to improve consumption of these foods may be time-consuming, costly and burdensome. The aim of this study was to determine if a social norms intervention, examining the effects of normative and manipulated feedback of participants’ carotenoid scores compared to a no-norm control, could increase fruit and vegetable consumption among college students. Such a strategy could be a cost-effective method for promoting healthy diets in this population.

While self-reported increases in fruit …

Development Of Genetic Goat And Hamster Models Of Atrial Fibrillation And Long Qt Syndrome; And Genetic Hamster Models Of Middle East Respiratory Syndrome, Dane A. Rasmussen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Atrial fibrillation (AF) and long QT syndrome (LQTS) are potentially lethal heart rhythm disorders that can be caused by mutations in the potassium channel gene KCNQ1. Middle East Respiratory Syndrome (MERS) is a viral infection with the potential to replicate the devastating effects of the SARS outbreak in 2003. All three of these diseases are in need of genetic animal models.

To address these needs, my thesis project focused on the development of genetic goat and hamster models of AF and LQTS, and genetic hamster models of MERS. Because of the goat’s similar organ size/physiology and the hamster’s similar lipid …

Scalable Bio-Production Of High Value Products In Bacteria, Yukie Kawasaki

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Natural products are structurally and chemically diverse bioactive compounds produced by living organisms. The complex structures of natural products are often difficult to duplicate synthetically and thus industrial production of natural products most often depends on use of the host organisms. In this dissertation research, scalable production of natural products was pursued in bacterial platforms.

Biliverdin IXα is a natural anti-inflammatory compound which is emerging as a potent cytoprotectant in the medical field. Syringomycin E is a natural fungicide expected to be an effective agrofungicide in organic farming. Both biliverdin IXα and syringomycin E have limited supplies in the market. …

Novel Techniques To Determine Soil Evaporation Rates: Heat Pulse Probe And Automated Microlysimeter, Kashifa Rumana

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Increase in world population rate has augmented the global water use in municipal, industrial, and agricultural sectors, with renewable water resources changing
very little with time. Climate change and variability, degradation of water quality as a result of industrial waste streams, animal manure and waste, application of chemicals, pesticides, pharmaceuticals, heavy metals, etc. have largely influenced the quantity and quality of soil water. Root zone water helps sustain the agricultural industry by providing much of the water needed for irrigation. It is critical to monitor the soil water availability, especially within the plant root zones. The subsurface water tends to …