Life Sciences Commons^™

Terrestrial Snail Communities Of The Lower Rio Grande Valley Are Affected By Human Disturbance And Correlate With Vegetation Community Composition, Briante S. Lewis Najev, Alison Schofield, Raziel I. Flores, Benjamin T. Hutchins, J. Andrew Mcdonald, Kathryn E. Perez

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The lower Rio Grande Valley of Texas (LRGV) contains a unique, subtropical, semiarid floodplain with most of the few remaining Tamaulipan thorn forests in the United States. Less than 2% of Tamaulipan thorn forest remains, with urban and agricultural conversion potentially threatening diverse plant and animal communities native to the habitat. We performed vegetative community surveys and conducted a comprehensive survey of terrestrial snail communities in intact (refugia sites, minimally altered in recent times) and altered (previously cleared and regrown or restored) Tamaulipan thorn forest habitats of the LRGV. In a comparison of intact and altered sites that have comparable …

Review Of Major Crop And Animal Arthropod Pests Of South Texas, Holly N. Davis, John A. Goolsby, Donald B. Thomas, Ismael Badillo, Rupesh R. Kariyat, Christopher Vitek, Danielle Sekula

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The Lower Rio Grande Valley is an area in Texas that consists of the four southern-most counties. This area contains a diverse range of agriculture and land-use including vegetable, row-crop and livestock production. The year-around cool to hot subtropical climate means that green vegetation is continually present, including many crops. Geographically, it shares an international border, making it a region vulnerable to new invasive species and the re-introduction of pests that have been previously eliminated in the United States. These combined factors lead to an array of arthropod pests that may have serious impacts on the crops, animals, and people …

A Tale Of Two Cities: Aedes Mosquito Surveillance Across The Texas-Mexico Border, Teresa Patricia Feria-Arroyo, Consuelo Aguilar, Cuauhtémoc Quintero Vazquez, Rene Santos-Luna, Susana Roman-Perez, Tamer Oraby, Gustavo Sanchez Tejeda, Fabian Correa Morales, Víctor M. Salazar Bueyes, Pascual Camacho Guevara

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Cross border situations complicate epidemiologic risk assessments in transboundary regions such as the US-Mexico border. Countries have different health policies, mosquito control policies, and mosquito surveillance systems. We established a binational Aedes mosquito surveillance program in Reynosa, Tamaulipas, and McAllen, Texas by replicating a part of the Mexican Integrated Vector Monitoring System (IVMS) across the international border. The entomologic surveillance of the IVMSs is based on ova collection cups (ovitraps) and for the binational project, the surveillance protocol was modified to include an Autocidal Gravid Ovitrap (AGO) in the center of every city-block (100 m2) distribution of four ovitraps. We …

Mitochondrial Genomes And Genetic Structure Of The Kemp's Ridley Sea Turtle (Lepidochelys Kempii), Hilary R. Frandsen, Diego F. Figueroa, Jeff A. George

School of Earth, Environmental, & Marine Sciences Faculty Publications

The Kemp's ridley (Lepidochelys kempii) is the world's most endangered sea turtle species and is primarily distributed in the Gulf of Mexico. In the United States, South Padre Island, Texas serves as a key nesting ground for the species. Genetic studies of the Kemp's ridley have been used to aid in conservation and management practices, with the mitochondrial control region as the most commonly used marker due to its perceived hypervariability and ease of sequencing. However, with the advent of next generation sequencing technology, targeting complete mitochondrial genomes is now feasible. Here, we describe a more complete mitochondrial genome for …

Commentary: Acute Effects Of Exercise Mode On Arterial Stiffness And Wave Reflection In Healthy Young Adults: A Systematic Review And Meta-Analysis, J. Derek Kingsley, Yu Lun Tai

Health & Human Performance Faculty Publications

No abstract provided.

Histological Evidence Of Annual And Lunar Reproductive Rhythms Of Atlantic Sea Urchin, Arbacia Punctulata In The Gulf Of Mexico: Changes In Nutritive Phagocytes In Relation To Gametogenesis, Eleazar Hernandez Ii

Theses and Dissertations

Environmental phenomena such as temperature, photoperiod, tidal cycle, and lunar rhythm act as external cues that stimulate the reproductive activity of marine organisms. In this study, I report the annual and lunar reproductive cycles, and changes in nutritive phagocytes (NPs) in relation to gonadal maturation of Atlantic sea urchin (Arbacia punctulata, a primeval species). Monthly and weekly changes in gonadal development/maturation were observed histologically. In male, the testicular lobules were densely packed with sperm from June to August. In female, on the other hand, mature eggs first appeared in some ovaries in May, numerically increased from June to …

Genetic Determinants Of Variation In The Gh/Igf-1 Axis And Their Relationship To Cardiometabolic Health, Rafael Luis Aguirre Guillen

Theses and Dissertations

Background: In a study of Mexican Americans, we performed analyses of GEI and pleiotropy in the axis in relation to MS. GH/IGF-1 axis components were studied. Model parameters and likelihoods were estimated by maximum likelihood.

Results: Pleiotropy was observed for IGFBP3 (p

Conclusions: IGF-I and IGFBP3 are genetically correlated with MS whereas MS influences the additive genetic variance in IGFBP1 variables mainly but also in IGF-I somewhat by virtue of the VH exhibited by IGF-I/IGFBP1.

The Correlation Among Metabolic Syndrome Risk Factors, Hemodynamics, And Arterial Elasticity In Hispanic College Students, Paloma J. Mendoza

Theses and Dissertations

PURPOSE: The purpose of this study was to determine the correlation among MetS risk factors, hemodynamics, and arterial elasticity in Hispanic students attending The University of Texas Rio Grande Valley.

RESULTS: Systolic blood pressure (SBP), diastolic blood pressure (DBP), and fasting glucose (GLU) were the only components of MetS that had a significant correlation with large arterial elasticity (SPB: males: -.477 and females: -.503; DBP: females: -.300; p

CONCLUSION: MetS risk factors significantly correlated with both arterial elasticity and hemodynamic components. Uniquely in this population, waist circumference and systemic vascular resistance was reversely associated.

Genetics And Morphology Of Invasive Tubastraea Species Within The Gulf Of Mexico: A Case Study Of Species Misidentification And Distribution, Amelia E. Mcclure

Theses and Dissertations

The invasive corals, Tubastraea coccinea and Tubastraea micrathus, are known to thrive in reefs within the Gulf of Mexico (GOM). Many studies have indicated that species within this genus are spreading throughout the western Atlantic due to their successful invasion on degraded and artificial reef systems. In the Northern GOM, artificial reefs have been created from decommissioned oil rigs and sunken vessels to provide a hard substrate for coral growth. Although, this method is demonstrating success, it is also facilitating, the dispersal of undesired species. The species, T. coccinea and T. micranthus, were thought to be the only …

Production Of Biscuits By Substitution With Different Ratios Of Yellow Pea Flour, Jikai Zhao, Xin Liu, Xiang Bai, Fengcheng Wang

School of Earth, Environmental, & Marine Sciences Faculty Publications

To promote the commercialization of yellow pea flour (YPF) due to its nutritional benefits. Four biscuits with different YPF ratio (10%–50%) were conducted to explore the optimal addition percentage. The effects of YPF on the rheological and baking performance of biscuits were performed. The results showed that the substitution ratio of YPF and milling methods had a critical impact on the rheological properties of dough. The dough stability decreased gradually while a softening degree increased with YPF ratio increased. In a term of biscuits, the dimensions of length (L), width (W), thickness (T) and color (L*) of biscuits reduced as …

Predation Of Eastern Cottontail Rabbit (Sylvilagus Floridanus) By Great Blue Heron (Ardea Herodias), Carlos E. Cintra-Buenrostro, J. E. Cifuentes-Lujan

School of Earth, Environmental, & Marine Sciences Faculty Publications

An opportunistic predation by Great Blue Heron (Ardea herodias) on Eastern cottontail rabbit (Sylvilagus floridanus) was observed in south Texas on 31 Oct 2019. The Great Blue Heron had already captured the Eastern cottontail rabbit at the first observation but the maneuvering process, killing, and ingestion were recorded photographically, which make this observation unique even though this might constitute the second report on Great Blue Heron eating Eastern cottontail rabbits.

Assessing The Rehabilitation Status Of The Reflooded Bahia Grande, Texas Based On Trace Gas Fluxes, Benthic Macroinvertebrates, And Fish Community Data Along Salinity And Seagrass Gradients, Catherine M. Eckert

Theses and Dissertations

The Bahia Grande is a 6,500-acre tidal basin located at the southernmost tip of Texas. Tidal flow into this coastal estuary was cut off by construction projects in the 1930s, causing the basin to dry up for ~70 years. In 2005, a pilot channel was built to reconnect the estuary to tidal waters, allowing the basin to refill. However, the pilot channel, in addition to other barriers within the basin, do not allow for adequate tidal exchange, leading to intermittent, extreme hypersalinity. Presumably because of the extreme hypersalinity in parts of the Bahia Grande, seagrass beds, which play vital roles …

Viability Of Wetland Crops For Use In Treatment Wetlands: Nitrogen Removal From Water And Production Of Food, Andrew Denson Corder

Theses and Dissertations

Treatment wetlands are used to treat wastewater from a variety of sources, but their functionality depends on the macrophytes present therein. To better understand the viability of wetland macrophytes both as sources of food and as agents of nitrogen removal from wastewater, this study quantified plant growth, food production, and nitrogen removal capacity of three common wetland crops as well as three locally dominant graminoid species in a variety of relevant ecological contexts. All six plant species and a control were grown over a ten-week period in three related experiments: (1) under three moisture regimes, (2) with or without competition …

The Acute Effects Of Warm-Up With And Without Blood Flow Restriction Cuffs On Lower Body Temperature, Flexibility, And Vertical Jump Power, Phillipe Thomas Lopez

Theses and Dissertations

Purpose: The purpose of this study was to determine the effect of blood flow restriction warmups (BFR-WU) on skin temperature (ST), range of motion (ROM), and vertical jump (VJ) performance.

Methods: Forty-seven participants performed WU’s with unilateral BFR application. Each participant took part in five different WU durations. Measurements of ST, ROM, VJ were taken at baseline, post-WU, and post-8min.

Results: Significant conditions main effect (p<0.05), condition*time (p<0.05), WUduration*condition (p<0.01), and conditions*time*sex interactions (p<0.05) were found by repeated measures ANOVA.

Conclusion: The current findings reveal that BFR-WU’s react differently throughout time, when compared to NBFR-WU, for ST and VJ performance, but not ROM. The length of duration was only significant …

A Landscape-Scaled And Community Ecology Approach To Wildlife Corridor Design In South Texas, James A. Stilley

Theses and Dissertations

A formidable challenge in landscape ecology is developing a sound resolution to mitigate the impacts of habitat fragmentation and restore connectivity to a degraded landscape. The problem is worldwide landscapes are becoming primarily anthropogenic and areas set aside for wildlife are small and isolated. Researchers’ have developed the concept of the wildlife corridor to mediate this situation but a proper methodology to implement this concept is still in its infancy. This study aims to uncover a quantitative and repeatable wildlife corridor design methodology based on the least cost analysis strategy with both a singular focal taxa approach and a comprehensive …

Crossover Interference And Sex-Specific Genetic Maps Shape Identical By Descent Sharing In Close Relatives, Madison Caballero, Daniel N. Seidman, Ying Qiao, Jens Sannerud, Thomas D. Dyer, Donna M. Lehman, Joanne E. Curran, Ravindranath Duggirala, John Blangero, Shai Carmi, Amy L. Williams

School of Medicine Publications

Simulations of close relatives and identical by descent (IBD) segments are common in genetic studies, yet most past efforts have utilized sex averaged genetic maps and ignored crossover interference, thus omitting features known to affect the breakpoints of IBD segments. We developed Ped-sim, a method for simulating relatives that can utilize either sex-specific or sex averaged genetic maps and also either a model of crossover interference or the traditional Poisson model for inter-crossover distances. To characterize the impact of previously ignored mechanisms, we simulated data for all four combinations of these factors. We found that modeling crossover interference decreases the …

Nrxn1 Is Associated With Enlargement Of The Temporal Horns Of The Lateral Ventricles In Psychosis, Ney Alliey-Rodriguez, Tamar A. Grey, Rebecca Shafee, Huma Asif, Ney Alliey Rodriguez

School of Medicine Publications

Schizophrenia, Schizoaffective, and Bipolar disorders share behavioral and phenomenological traits, intermediate phenotypes, and some associated genetic loci with pleiotropic effects. Volumetric abnormalities in brain structures are among the intermediate phenotypes consistently reported associated with these disorders. In order to examine the genetic underpinnings of these structural brain modifications, we performed genome-wide association analyses (GWAS) on 60 quantitative structural brain MRI phenotypes in a sample of 777 subjects (483 cases and 294 controls pooled together). Genotyping was performed with the Illumina PsychChip microarray, followed by imputation to the 1000 genomes multiethnic reference panel. Enlargement of the Temporal Horns of Lateral Ventricles …

Characterization Of Plasmids Harbored By Vibrio Cholerae Isolates Endemic To The Rio Grande Delta, Viviana Trevino

Theses and Dissertations

Cholera is a diarrheal disease responsible for considerable morbidity and mortality globally. Epidemics along the Rio Grande Delta were reported during the 1850s, and the etiological agent Vibrio cholerae, remains endemic, thus presenting a unique opportunity for a study of historical and biological relevance. V. cholerae strains were isolated from two locations: the Rio Grande River under a bridge linking Brownsville to Matamoros (site 21) and where the river empties into the Gulf of Mexico (site 42). Two strains from site 21, and one from site 42 were selected to isolate, subclone, sequence, assemble and annotate extra-chromosomal elements. Results …

Use Of >100,000 Nhlbi Trans-Omics For Precision Medicine (Topmed) Consortium Whole Genome Sequences Improves Imputation Quality And Detection Of Rare Variant Associations In Admixed African And Hispanic/Latino Populations, Madeline H. Kowalski, Huijun Qian, Ziyi Hou, Jonathan D. Rosen, Amanda L. Tapia, Yue Shan, Deepti Jain, Maria Argos, John Blangero, Juan M. Peralta

School of Medicine Publications

Most genome-wide association and fine-mapping studies to date have been conducted in individuals of European descent, and genetic studies of populations of Hispanic/Latino and African ancestry are limited. In addition, these populations have more complex linkage disequilibrium structure. In order to better define the genetic architecture of these understudied populations, we leveraged >100,000 phased sequences available from deep-coverage whole genome sequencing through the multi-ethnic NHLBI Trans-Omics for Precision Medicine (TOPMed) program to impute genotypes into admixed African and Hispanic/Latino samples with genome-wide genotyping array data. We demonstrated that using TOPMed sequencing data as the imputation reference panel improves genotype imputation …

The Increase Of Hiv-1 Infection, Neurocognitive Impairment, And Type 2 Diabetes In The Rio Grande Valley, Roberto De La Garza, Hansapani Rodrigo, Francisco Fernandez, Upal Roy

Health & Biomedical Sciences Faculty Publications

The Human Immunodeficiency Virus (HIV-1) infection remains a persistent predicament for the State of Texas, ranking seventh among the most documented HIV cases in the United States. In this regard, the Rio Grande Valley (RGV) in South Texas is considered as one of the least investigated areas of the state with respect to HIV infection and HIV associated comorbidities. Considering the 115% increase in average HIV incidence rates per 100,000 within the RGV from 2007-2015, it is worth characterizing this population with respect to their HIV-1 infection, HIV-1 Associated Neurocognitive Disorders (HAND), and the association of treatment with combined antiretroviral …

Insights To The Genetic Structure Of Calanus Helgolandicus (Calanoida: Copepoda) From Deep-Sea Specimens In The Balearic Sea, Diego F. Figueroa, Joan E. Cartes, Nicole J. Figueroa

School of Earth, Environmental, & Marine Sciences Faculty Publications

Calanus helgolandicus is widely distributed across the northeast Atlantic and Mediterranean, and also found in the Black Sea where it is referred to as Calanus euxinus. Previous genetic studies do not include deep-water specimens despite high abundances at bathypelagic and mesopelagic depths. Our objective is to compare the genetic structure of C. heloglandicus from the deep Balearic Sea to that of coastal populations in the Northeastern Atlantic Ocean, the Adriatic Sea, and the Black Sea defined from previous research. We use a portion of the mitochondrial gene cytochrome oxidase I from 41 individuals of C. helgolandicus collected at 2170 m …

Mitogenomic Phylogenetic Analyses Of Leptogorgia Virgulata And Leptogorgia Hebes (Anthozoa: Octocorallia) From The Gulf Of Mexico Provides Insight On Gorgoniidae Divergence Between Pacific And Atlantic Lineages, Samantha Silvestri, Diego F. Figueroa, David Hicks, Nicole J. Figueroa

School of Earth, Environmental, & Marine Sciences Faculty Publications

The use of genetics in recent years has brought to light the need to reevaluate the classification of many gorgonian octocorals. This study focuses on two Leptogorgia species—Leptogorgia virgulata and Leptogorgia hebes—from the northwestern Gulf of Mexico (GOM). We target complete mitochondrial genomes and mtMutS sequences, and integrate this data with previous genetic research of gorgonian corals to resolve phylogenetic relationships and estimate divergence times. This study contributes the first complete mitochondrial genomes for L. ptogorgia virgulata and L. hebes. Our resulting phylogenies stress the need to redefine the taxonomy of the genus Leptogorgia in its entirety. The fossil-calibrated divergence …

The Complete Mitochondrial Genome Of Tanacetipathes Thamnea Warner, 1981 (Antipatharia: Myriopathidae), Diego F. Figueroa, David Hicks, Nicole J. Figueroa

School of Earth, Environmental, & Marine Sciences Faculty Publications

Specimens of the black coral Tanacetipathes thamnea were collected from the Northwestern Gulf of Mexico. The complete mitochondrial genome of one of these specimens was obtained from genomic DNA by next-generation sequencing technology on the Illumina HiSeq 2500. Only three species of black corals have a completely sequenced mitochondrial genome. These were used to reconstruct the phylogeny for the order Antipatharia. The mitochondrial genome of T. thamnea is 17,712 base pairs and contains 13 protein-coding genes, 2 ribosomal RNAs, and 2 transfer RNAs in the following order: 16s RNA, COX3, COX1 (with intron), ND4L, COX2, ND4, …

Non-Invasive Methods For Measuring And Monitoring Stress Physiology In Imperiled Amphibians, Edward J. Narayan, Zachery R. Forsburg, Drew R. Davis, Caitlin R. Gabor

School of Earth, Environmental, & Marine Sciences Faculty Publications

Global climate change is negatively impacting global biodiversity and ectothermic vertebrates, with amphibians being the most imperiled vertebrate taxa. Increased mean global atmospheric temperatures, high rates of habitat degradation, and exposure to infectious diseases, such as chytridiomycosis, have contributed to population declines and extinctions of rare and endangered amphibian species. Field-based monitoring of physiological endocrine traits can help determine the sub-lethal effects of environmental stressors and provide early alerts when populations are chronically stressed. Recent advances in amphibian stress endocrinology include the development and use of non-invasive methods to quantify the glucocorticoid, or stress biomarker, corticosterone. Non-invasive methods, such as …

Water‐Borne And Plasma Corticosterone Are Not Correlated In Spotted Salamanders, Alice R. Millikin, Sarah K. Woodley, Drew R. Davis, Ignacio T. Moore, James T. Anderson

School of Earth, Environmental, & Marine Sciences Faculty Publications

Water‐borne hormone measurement is a noninvasive method suitable for amphibians of all sizes that are otherwise difficult to sample. For this method, containment‐water is assayed for hormones released by the animal. Originally developed in fish, the method has expanded to amphibians, but requires additional species‐specific validations. We wanted to determine physiological relevance of water‐borne corticosterone in spotted salamanders (Ambystoma maculatum) by comparing concentrations to those taken using established corticosterone sampling methods, such as plasma. Using a mixture of field and laboratory studies, we compared water‐borne corticosterone levels to other traditional methods of sampling corticosterone for spotted salamander larvae, metamorphs, and …

Investigations Of Aerobic Methane Oxidation In Two Marine Seep Environments: Part 1—Chemical Kinetics, Eric W. Chan, Allan M. Shiller, Dongjoo J. Joung, Eleanor C. Arrington, David L. Valentine, Molly C. Redmond, John A. Breier, Scott A. Socolofsky, John D. Kessler

School of Earth, Environmental, & Marine Sciences Faculty Publications

Microbial aerobic oxidation is known to be a significant sink of marine methane (CH4), contributing to the relatively minor atmospheric release of this greenhouse gas over vast stretches of the ocean. However, the chemical kinetics of aerobic CH4 oxidation are not well established, making it difficult to predict and assess the extent that CH4 is oxidized in seawater following seafloor release. Here we investigate the kinetics of aerobic CH4 oxidation using mesocosm incubations of fresh seawater samples collected from seep fields in Hudson Canyon, U.S. Atlantic Margin and MC118, Gulf of Mexico to gain a fundamental chemical understanding of this …

Investigations Of Aerobic Methane Oxidation In Two Marine Seep Environments: Part 2—Isotopic Kinetics, Eric W. Chan, Allan M. Shiller, Dongjoo J. Joung, Eleanor C. Arrington, David L. Valentine, Molly C. Redmond, John A. Breier, Scott A. Socolofsky, John D. Kessler

School of Earth, Environmental, & Marine Sciences Faculty Publications

During aerobic oxidation of methane (CH4) in seawater, a process which mitigates atmospheric emissions, the 12C‐isotopologue reacts with a slightly greater rate constant than the 13C‐isotopologue, leaving the residual CH4 isotopically fractionated. Prior studies have attempted to exploit this systematic isotopic fractionation from methane oxidation to quantify the extent that a CH4 pool has been oxidized in seawater. However, cultivation‐based studies have suggested that isotopic fractionation fundamentally changes as a microbial population blooms in response to an influx of reactive substrates. Using a systematic mesocosm incubation study with recently collected seawater, here we investigate the fundamental isotopic kinetics of aerobic …

Trust And Influence In The Gulf Of Mexico’S Fishery Public Management Network, Anthony Lima, Dongkyu Kim, Andrew M. Song, Gordon M. Hickey, Owen Temby

School of Earth, Environmental, & Marine Sciences Faculty Publications

Sustainable fishery management is a complex multi-sectoral challenge requiring substantial interagency coordination, collaboration, and knowledge sharing. While scholars of public management network theory and natural resource management have identified trust as one of the key ideational network properties that facilitates such interaction, relatively few studies have operationalized and measured the multiple dimensions of trust and their influence on collaboration. This article presents the results of an exploratory study examining the Gulf of Mexico fishery management network comprised of more than 30 stakeholder organizations. Using an empirically validated survey instrument, the distribution of four types of trust, three gradations of influence, …

Remote Sensing Of The Terrestrial Carbon Cycle: A Review Of Advances Over 50 Years, Jingfeng Xiao, Frederic Chevallier, Cecile Gomez, Luis Guanter, Jeffrey A. Hicke, Alfredo R. Huete, Kazuhito Ichii, Wenjian Ni, Yong Pang, Abdullah Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Highlights

• We review 50 years of history and advances in remote sensing of C fluxes and stocks

• We present an overview of terrestrial C cycle, remote sensing, and key milestones

• We review remote sensing platforms/sensors, data, methods, findings, and challenges

• We also discuss the uncertainty and validation of the C flux and stock estimates

• A forward-looking perspective and insights for future research are provided

Abstract

Quantifying ecosystem carbon fluxes and stocks is essential for better understanding the global carbon cycle and improving projections of the carbon-climate feedbacks. Remote sensing has played a vital role in this endeavor during the last …

Culturing Embryonic Cells From The Parthenogenetic Clonal Marble Crayfish Marmorkrebs Procambarus Virginalis Lyko, 2017 (Decapoda: Astacidea: Cambaridae), Heriberto Deleon Iii, Juan Garcia Jr., Dionn Carlo Silva, Oscar Quintanilla, Zen Faulkes, John M. Thomas Iii

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The parthenogenetic marbled crayfish, or Marmorkrebs (Procambarus virginalis Lyko 2017), is an emerging model organism. We describe a method to isolate cells from early-stage embryos and culture them in vitro. The identity of the cells was confirmed by sequencing the cytochrome c oxidase subunit I (COI) gene. This technique can be applied for use in the manipulation of embryonic parthenogenetic crayfish cells.