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Articles 1141 - 1170 of 1828

Full-Text Articles in Life Sciences

Vibrio Vulnificus Monitoring Along The Coastal Bend And The Rio Grande Valley, Texas, Louay Bachnak Dec 2017

Vibrio Vulnificus Monitoring Along The Coastal Bend And The Rio Grande Valley, Texas, Louay Bachnak

Honors Theses

Vibrio vulnificus is a common opportunistic pathogen found in marine, coastal, and estuarine waters. This one micrometer microorganism is the leading cause of deaths in the United States due to food poisoning after consumption of raw or undercooked seafood. The optimal temperature for survival is between 15.6°C and 35.0°C with moderate salinities – conditions frequently found in the Gulf of Mexico (Lin, Payne, & Schwarz, 2003).

In the United States, V. vulnificus infections are more common in states bordering the Gulf of Mexico, including Texas. However, infections can still occur in individuals consuming infected food more inland or sustain wounds …


Ph Effect On The Formation Of Thm And Haa Disinfection Byproducts And Potential Control Strategies For Food Processing, Yen-Con Hung, Brian W. Waters, Veerachandra K. Yemmireddy, Ching-Hua Huang Dec 2017

Ph Effect On The Formation Of Thm And Haa Disinfection Byproducts And Potential Control Strategies For Food Processing, Yen-Con Hung, Brian W. Waters, Veerachandra K. Yemmireddy, Ching-Hua Huang

School of Earth, Environmental, & Marine Sciences Faculty Publications

Chlorine-based sanitizers have seen wide spread use in food sanitation. The reaction of chlorine species with organic matter is a concern for two reasons. Available chlorine can be “used up” by organic compounds resulting in a lower amount of chlorine available for disinfection. Another concern is that some forms of chlorine can react with some organic compounds to form toxic halogenated disinfection byproducts (DBPs). Many studies have been conducted to evaluate the role of hypochlorous acid (HOCl) and hypochlorite ion (OCl−) in the production of DBPs with a particular interest in the production of trihalomethanes (THMs) and haloacetic acids (HAAs). …


Genetic Diversity Of Kemp's Ridley (Lepidochelys Kempii) Sea Turtles On South Padre Island, Texas, Hilary R. Frandsen Dec 2017

Genetic Diversity Of Kemp's Ridley (Lepidochelys Kempii) Sea Turtles On South Padre Island, Texas, Hilary R. Frandsen

Theses and Dissertations

In 2010, researchers observed an abrupt decline in nesting numbers of the Kemp’s ridley following 35 years of positive growth. In wake of this halt, and subsequent lowered nesting averages, evaluation of the genetic diversity of remaining individuals is relevant to investigate the plausibility of a genetic bottleneck, and determine the reproductive stability of the Kemp’s ridley.

Here, I evaluate the genetic diversity within a sampling of the Kemp’s ridleys on South Padre Island using two methods: targeting the mitochondrial control region and targeting the complete mitochondrial genome. Opportunistic samples were donated from juvenile ridleys on the East coast, and …


Foxo3 Regulation Of Stem Cell Markers Oct4 And Sox2 In Pten-Null Glioblastomas, Eduardo Martinez Dec 2017

Foxo3 Regulation Of Stem Cell Markers Oct4 And Sox2 In Pten-Null Glioblastomas, Eduardo Martinez

Theses and Dissertations

The PI3K pathway controls many cellular processes such as cell growth, survival, metabolism, apoptosis, and differentiation. Canonically, PI3K activates AKT leading to subsequent nuclear exportation of FOXO transcription factors. Dysregulation of the PI3K pathway is a hallmark in many cancers and often is attributable to a null mutation in PTEN. PTEN is a phosphatase that reverses the reactions catalyzed by PI3K. Loss of PTEN leads to constitutive inactivation of tumor suppressor FOXO proteins. However, there is increasing evidence that FOXO may still reside and promote transcriptional activity in the nucleus despite high PI3K output within certain advance cancers and …


Phylogeography Of An Estuarian Calanoid Copepod; Acartia Tonsa In The Texas Gulf Of Mexico, Nicole J. Figueroa Dec 2017

Phylogeography Of An Estuarian Calanoid Copepod; Acartia Tonsa In The Texas Gulf Of Mexico, Nicole J. Figueroa

Theses and Dissertations

The calanoid copepod, Acartia tonsa is one of the most abundant and well-studied estuarian species. However, the idea that this cosmopolitan species has unrestricted dispersal and high gene flow has been challenged. In this study, a more holistic picture of the phylogeography of A. tonsa was developed using the mitochondrial gene cytochrome oxidase one (mtCOI). Multiple new lineages were found in the Texas Gulf of Mexico that are basal to Northeastern Atlantic lineages. Connectivity was also observed between Brazil and the Texas Gulf of Mexico. The revised phylogeny shows a clear pattern of cryptic speciation as the species made a …


Functional Predictions Of Microbial Communities In Soil As Affected By Long‐Term Tillage Practices, Janani Hariharan, Aditi Sengupta, Parwinder Grewal, Warren A. Dick Dec 2017

Functional Predictions Of Microbial Communities In Soil As Affected By Long‐Term Tillage Practices, Janani Hariharan, Aditi Sengupta, Parwinder Grewal, Warren A. Dick

School of Earth, Environmental, & Marine Sciences Faculty Publications

Core Ideas

  • Microbial function is important but difficult to assess in soil.
  • An omics‐driven tool, PICRUSt, was used to characterize functions of soil microbial communities.
  • No‐tillage compared with plow tillage was functionally enriched for most nutrient cycles.
  • Many other functions integral to soil health can be explored by the PICRUSt omics approach.

Soil microbial communities affect the soil's biological, chemical, and physical properties, but there is still a knowledge gap regarding the long‐term impact of tillage practices on soil microbial dynamics. Additionally, the accurate identification of belowground microbial functions is a topic of active interest. In this study, microbial community …


Gastrin Induces Nuclear Export And Proteasomal Degradation Of Menin In Enteric Glial Cells, Sinju Sundaresan, Cameron A. Meininger, Anthony J. Kang, Amanda L. Photenhauer, Michael M. Hayes, Nirakar Sahoo, Jolanda Lindenberg, Jolanta Grembecka, Tomasz Cierpicki, Lin Ding Dec 2017

Gastrin Induces Nuclear Export And Proteasomal Degradation Of Menin In Enteric Glial Cells, Sinju Sundaresan, Cameron A. Meininger, Anthony J. Kang, Amanda L. Photenhauer, Michael M. Hayes, Nirakar Sahoo, Jolanda Lindenberg, Jolanta Grembecka, Tomasz Cierpicki, Lin Ding

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Background & aims: The multiple endocrine neoplasia, type 1 (MEN1) locus encodes the nuclear protein and tumor suppressor menin. MEN1 mutations frequently cause neuroendocrine tumors such as gastrinomas, characterized by their predominant duodenal location and local metastasis at time of diagnosis. Diffuse gastrin cell hyperplasia precedes the appearance of MEN1 gastrinomas, which develop within submucosal Brunner's glands. We investigated how menin regulates expression of the gastrin gene and induces generation of submucosal gastrin-expressing cell hyperplasia.

Methods: Primary enteric glial cultures were generated from the VillinCre:Men1FL/FL:Sst-/- mice or C57BL/6 mice (controls), with or without inhibition of gastric acid by omeprazole. Primary …


Morganella Morganii (Enterobacteriales: Enterobacteriaceae) Is A Lethal Pathogen Of Mexican Fruit Fly (Diptera: Tephritidae) Larvae, Bacilio Salas, Hugh E. Conway, Erin Schuenzel, Kristen Hopperstad, Christopher Vitek, Don C. Vacek Dec 2017

Morganella Morganii (Enterobacteriales: Enterobacteriaceae) Is A Lethal Pathogen Of Mexican Fruit Fly (Diptera: Tephritidae) Larvae, Bacilio Salas, Hugh E. Conway, Erin Schuenzel, Kristen Hopperstad, Christopher Vitek, Don C. Vacek

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Tephritid pests, such as the Mexican fruit fly, Anastrepha ludens (Loew), represent a major threat to fruit production worldwide. In order to control these pests, sterile insect technique is used to suppress and eradicate wild populations. For this control method to be successful, hundreds of millions of flies must be produced weekly in mass rearing facilities. The large quantity of artificial diet and close proximity of flies at various life stages allows bacteria from family Enterobacteriaceae, Bacillaceae, Pseudomonadaceae, and others to multiply and spread more easily. In this study, bacteria with a possible pathogenic effect were isolated from Mexican fruit …


Toxoplasma Modulates Signature Pathways Of Human Epilepsy, Neurodegeneration & Cancer, Huân M. Ngô, Ying Zhou, Hernan Lorenzi, Kai Wang, Ney Alliey Rodriguez Dec 2017

Toxoplasma Modulates Signature Pathways Of Human Epilepsy, Neurodegeneration & Cancer, Huân M. Ngô, Ying Zhou, Hernan Lorenzi, Kai Wang, Ney Alliey Rodriguez

School of Medicine Publications

One third of humans are infected lifelong with the brain-dwelling, protozoan parasite, Toxoplasma gondii. Approximately fifteen million of these have congenital toxoplasmosis. Although neurobehavioral disease is associated with seropositivity, causality is unproven. To better understand what this parasite does to human brains, we performed a comprehensive systems analysis of the infected brain: We identified susceptibility genes for congenital toxoplasmosis in our cohort of infected humans and found these genes are expressed in human brain. Transcriptomic and quantitative proteomic analyses of infected human, primary, neuronal stem and monocytic cells revealed effects on neurodevelopment and plasticity in neural, immune, and endocrine networks. …


The Acute Effects Of Resistance Exercise With Blood Flow Restriction Versus Traditional Resistance Exercise On Arterial Compliance And Energy Expenditure In Recreationally Active Males And Females, Danny D. Dominguez Dec 2017

The Acute Effects Of Resistance Exercise With Blood Flow Restriction Versus Traditional Resistance Exercise On Arterial Compliance And Energy Expenditure In Recreationally Active Males And Females, Danny D. Dominguez

Theses and Dissertations

PURPOSE: The aim of this study was to investigate the acute effects of various intensities of volume matched resistance exercise with blood flow restriction (BFR) and traditional resistance exercise on hemodynamic variables, arterial compliance, oxygen consumption (VO2), carbon dioxide production (VCO2), respiratory exchange ratio (RER), and energy expenditure (EE) during exercise and after exercise.

RESULTS: Significant condition main effects (p < 0.05) were found for RPE, HR, crPWV, fdPWV, LAE, SAE, TVI, RER during and postexercise. BFR25 cause greater increases in RPE and HR. BFR50 caused marked increases in SAE, crPWV, and fdPWV.

CONCLUSION: All BFR and traditional exercise conditions found no significant differences in EE, VCO2, and VO2. The lack of differences is likely due to time of protocol. Further protocols should implement greater time of exercise, as BFR had increased hemodynamic …


Utilizing Accelerometer Telemetry Tags To Compare Red Snapper (Lutjanus Campechanus) Behavior On Artificial And Natural Reefs, Ethan T. Getz Dec 2017

Utilizing Accelerometer Telemetry Tags To Compare Red Snapper (Lutjanus Campechanus) Behavior On Artificial And Natural Reefs, Ethan T. Getz

Theses and Dissertations

The Texas Parks and Wildlife Department Artificial Reef Program has deployed over 2,800 hectares of reefing area composed of petroleum platforms, steel vessels, and concrete. Artificial reefs have been shown to support many important reef fishes such as red snapper (Lutjanus campechanus), however, few studies have compared fish behavior on artificial reefs and natural habitats. We examined activity levels, behavioral patterns and habitat preferences of red snapper over natural reefs, oil platforms and submerged ships. Telemetry tags (Sonotronics model MTT) with tri-axial acceleration range, average depth, and average temperature were programmed to optimize data collection and tag life. …


Effect Of Land Use Change On South Texas Bats, Katharine Leigh Jones Dec 2017

Effect Of Land Use Change On South Texas Bats, Katharine Leigh Jones

Theses and Dissertations

Bats were acoustically recorded in South Texas over the summer of 2017. Nine species of bats were recorded and identified.


Mechanisms Of Chinese Tallow (Triadica Sebifera) Invasion And Their Management Implications – A Review, Lauren S. Pile, G. Geoff Wang, Jeremy P. Stovall, Evan Siemann, Gregory S. Wheeler, Christopher A. Gabler Nov 2017

Mechanisms Of Chinese Tallow (Triadica Sebifera) Invasion And Their Management Implications – A Review, Lauren S. Pile, G. Geoff Wang, Jeremy P. Stovall, Evan Siemann, Gregory S. Wheeler, Christopher A. Gabler

School of Earth, Environmental, & Marine Sciences Faculty Publications

Ecosystems are under increasing stress from environmental change, including invasion by non-native species that can disrupt ecological processes and functions. Chinese tallow [Triadica sebifera (L.) Small] is a highly invasive tree species in southeastern US forests, prairies, and wetlands, and effectively managing this invasive species is a significant challenge for scientists and land managers. In this review, we synthesize the literature on invasion ecology and management of Chinese tallow. Our review suggests that the invaded range of Chinese tallow is currently limited by dispersal in many areas and by low temperatures and low soil moisture, and by high soil …


Validating Sidescan Sonar As A Fish Survey Tool Over Artificial Reefs, Michael A. Bollinger, Richard Kline Nov 2017

Validating Sidescan Sonar As A Fish Survey Tool Over Artificial Reefs, Michael A. Bollinger, Richard Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

Visual observation methods via SCUBA are commonly used to survey artificial reef fish, although conditions in the Gulf of Mexico often make surveys difficult or even dangerous for divers. In this study, sidescan sonar was used to quantify water-column fish abundance and was compared to the established visual observation methods on SCUBA over four reef sites. Calibrated intensity values measured from sidescan sonar echo returns were used to estimate fish body length and to calculate scaled biomass (g/m2 reef) from a pooled fish length–weight relationship of commonly observed reef fish in the area. Sidescan sonar methods were equivalent to SCUBA …


Co-Independent Modification Of K+ Channels By Tricarbonyldichlororuthenium(Ii) Dimer (Corm-2), Guido Gessner, Nirakar Sahoo, Sandip M. Swain, Gianna Hirth, Roland Schönherr, Ralf Mede, Matthias Westerhausen, Hans Henning Brewitz, Pascal Heimer, Diana Imhof Nov 2017

Co-Independent Modification Of K+ Channels By Tricarbonyldichlororuthenium(Ii) Dimer (Corm-2), Guido Gessner, Nirakar Sahoo, Sandip M. Swain, Gianna Hirth, Roland Schönherr, Ralf Mede, Matthias Westerhausen, Hans Henning Brewitz, Pascal Heimer, Diana Imhof

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Although toxic when inhaled in high concentrations, the gas carbon monoxide (CO) is endogenously produced in mammals, and various beneficial effects are reported. For potential medicinal applications and studying the molecular processes underlying the pharmacological action of CO, so-called CO-releasing molecules (CORMs), such as tricabonyldichlororuthenium(II) dimer (CORM-2), have been developed and widely used. Yet, it is not readily discriminated whether an observed effect of a CORM is caused by the released CO gas, the CORM itself, or any of its intermediate or final breakdown products. Focusing on Ca2+- and voltage-dependent K+ channels (KCa1.1) and voltage-gated K+ channels (Kv1.5, Kv11.1) relevant …


A Metadata Reporting Framework (Frames) For Synthesis Of Ecohydrological Observations, Danielle S. Christianson, Charuleka Varadharajan, Bradley O. Christoffersen, Matteo Detto, Boris Faybishenko, Bruno O. Gimenez, Val Hendrix, Kolby J. Jardine, Robinson Negron-Juarez, Gilberto Z. Pastorello Nov 2017

A Metadata Reporting Framework (Frames) For Synthesis Of Ecohydrological Observations, Danielle S. Christianson, Charuleka Varadharajan, Bradley O. Christoffersen, Matteo Detto, Boris Faybishenko, Bruno O. Gimenez, Val Hendrix, Kolby J. Jardine, Robinson Negron-Juarez, Gilberto Z. Pastorello

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Metadata describe the ancillary information needed for data preservation and independent interpretation, comparison across heterogeneous datasets, and quality assessment and quality control (QA/QC). Environmental observations are vastly diverse in type and structure, can be taken across a wide range of spatiotemporal scales in a variety of measurement settings and approaches, and saved in multiple formats. Thus, well-organized, consistent metadata are required to produce usable data products from diverse environmental observations collected across field sites. However, existing metadata reporting protocols do not support the complex data synthesis and model-data integration needs of interdisciplinary earth system research. We developed a metadata reporting …


Shrubs Facilitate Recruitment Of Caragana Stenophylla Pojark: Microhabitat Amelioration And Protection Against Herbivory, Li-Na Xie, Hong-Yu Guo, Zhe Liu, Christopher A. Gabler, Wei-Zhong Chen, Song Gu, Cheng-Cang Ma Oct 2017

Shrubs Facilitate Recruitment Of Caragana Stenophylla Pojark: Microhabitat Amelioration And Protection Against Herbivory, Li-Na Xie, Hong-Yu Guo, Zhe Liu, Christopher A. Gabler, Wei-Zhong Chen, Song Gu, Cheng-Cang Ma

School of Earth, Environmental, & Marine Sciences Faculty Publications

Key message

Mature Caragana stenophylla shrubs facilitated intraspecific sapling establishment by two mechanisms: microhabitat amelioration and protection against herbivory. Facilitation was mediated by climate, grazing, and sapling age.

Context

Pre-existing shrubs could facilitate sapling establishment of woody plants; however, how these facilitation vary across abiotic and biotic stress gradients and the underlying mechanisms remain unclear.

Aims

The aim of this study is understanding the facilitation of shrub on sapling establishment and how the two underlying mechanisms, microhabitat amelioration and protection against herbivory, vary across climatic aridity gradients, grazing gradients, and sapling age.

Methods

We conducted field sowing experiments to examine …


Genome-Wide Association Studies Of Smooth Pursuit And Antisaccade Eye Movements In Psychotic Disorders: Findings From The B-Snip Study, R. Lencer, L. J. Mills, Ney Alliey-Rodriguez, R. Shafee Oct 2017

Genome-Wide Association Studies Of Smooth Pursuit And Antisaccade Eye Movements In Psychotic Disorders: Findings From The B-Snip Study, R. Lencer, L. J. Mills, Ney Alliey-Rodriguez, R. Shafee

School of Medicine Publications

Eye movement deviations, particularly deficits of initial sensorimotor processing and sustained pursuit maintenance, and antisaccade inhibition errors, are established intermediate phenotypes for psychotic disorders. We here studied eye movement measures of 849 participants from the Bipolar-Schizophrenia Network on Intermediate Phenotypes (B-SNIP) study (schizophrenia N = 230, schizoaffective disorder N = 155, psychotic bipolar disorder N = 206 and healthy controls N = 258) as quantitative phenotypes in relation to genetic data, while controlling for genetically derived ancestry measures, age and sex. A mixed-modeling genome-wide association studies approach was used including ~ 4.4 million genotypes (PsychChip and 1000 Genomes imputation). Across …


Capturing Species-Level Drought Responses In A Temperate Deciduous Forest Using Ratios Of Photochemical Reflectance Indices Between Sunlit And Shaded Canopies, Taehee Hwang, Hamed Gholizadeh, Daniel A. Sims, Kimberly A. Novick, Edward R. Brzostek, Richard P. Phillips, Daniel T. Roman, Scott M. Robeson, Abdullah F. Rahman Oct 2017

Capturing Species-Level Drought Responses In A Temperate Deciduous Forest Using Ratios Of Photochemical Reflectance Indices Between Sunlit And Shaded Canopies, Taehee Hwang, Hamed Gholizadeh, Daniel A. Sims, Kimberly A. Novick, Edward R. Brzostek, Richard P. Phillips, Daniel T. Roman, Scott M. Robeson, Abdullah F. Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Highlights

  • We examine capability of spectral indices to capture isohydric/anisohydric behavior.

  • We used both in-situ spectral measurements and multi-angle MODIS images.

  • Only PRI could capture species-level drought responses.

  • This study presents a step forward to directly mapping emergent isohydricity.

Abstract

To classify trees along a spectrum of isohydric to anisohydric behavior is a promising new framework for identifying tree species' sensitivities to drought stress, directly related to the vulnerability of carbon uptake of terrestrial ecosystems with increased hydroclimate variability. Trees with isohydric strategies regulate stomatal conductance to maintain stationary leaf water potential, while trees with anisohydric strategies allow leaf …


Nitrate Leaching From Sand And Pumice Geomedia Amended With Pyrogenic Carbon Materials, James Jihoon Kang, Marissa Davila, Sergio Mireles, Jungseok Ho Oct 2017

Nitrate Leaching From Sand And Pumice Geomedia Amended With Pyrogenic Carbon Materials, James Jihoon Kang, Marissa Davila, Sergio Mireles, Jungseok Ho

School of Earth, Environmental, & Marine Sciences Faculty Publications

There is increasing interest in using pyrogenic carbon as an adsorbent for aqueous contaminants in stormwater. The objective of this study was to investigate pyrogenic carbon materials as an amendment to geomedia to reduce nitrate leaching. Batch adsorption and column experiments were conducted to evaluate the performance of a commercial activated carbon and two biochars incorporated (5% by weight) into sand and pumice columns. The batch adsorption with 50 mg L−1 of nitrate solution showed that only activated carbon resulted in a substantial adsorption for nitrate up to 41%. Tested biochars were not effective in removing aqueous nitrate and even …


A Novel Diffuse Fraction-Based Two-Leaf Light Use Efficiency Model: An Application Quantifying Photosynthetic Seasonality Across 20 Ameriflux Flux Tower Sites, Hao Yan, Shao-Qiang Wang, Kai-Liang Yu, Bin Wang, Qin Yu, Gil Bohrer, Dave Billesbach, Rosvel Bracho, Abdullah F. Rahman, Herman H. Shugart Oct 2017

A Novel Diffuse Fraction-Based Two-Leaf Light Use Efficiency Model: An Application Quantifying Photosynthetic Seasonality Across 20 Ameriflux Flux Tower Sites, Hao Yan, Shao-Qiang Wang, Kai-Liang Yu, Bin Wang, Qin Yu, Gil Bohrer, Dave Billesbach, Rosvel Bracho, Abdullah F. Rahman, Herman H. Shugart

School of Earth, Environmental, & Marine Sciences Faculty Publications

Diffuse radiation can increase canopy light use efficiency (LUE). This creates the need to differentiate the effects of direct and diffuse radiation when simulating terrestrial gross primary production (GPP). Here, we present a novel GPP model, the diffuse-fraction-based two-leaf model (DTEC), which includes the leaf response to direct and diffuse radiation, and treats maximum LUE for shaded leaves (ɛmsh defined as a power function of the diffuse fraction (Df)) and sunlit leaves (ɛmsu defined as a constant) separately. An Amazonian rainforest site (KM67) was used to calibrate the model by simulating the linear relationship …


Linear And Nonlinear Effects Of Temperature And Precipitation On Ecosystem Properties In Tidal Saline Wetlands, Laura C. Feher, Michael J. Osland, Kereen T. Griffith, James B. Grace, Rebecca J. Howard, Camille L. Stagg, Nicholas M. Enwright, Ken W. Krauss, Christopher A. Gabler, Richard H. Day, Kerrylee Rogers Oct 2017

Linear And Nonlinear Effects Of Temperature And Precipitation On Ecosystem Properties In Tidal Saline Wetlands, Laura C. Feher, Michael J. Osland, Kereen T. Griffith, James B. Grace, Rebecca J. Howard, Camille L. Stagg, Nicholas M. Enwright, Ken W. Krauss, Christopher A. Gabler, Richard H. Day, Kerrylee Rogers

School of Earth, Environmental, & Marine Sciences Faculty Publications

Climate greatly influences the structure and functioning of tidal saline wetland ecosystems. However, there is a need to better quantify the effects of climatic drivers on ecosystem properties, particularly near climate-sensitive ecological transition zones. Here, we used climate- and literature-derived ecological data from tidal saline wetlands to test hypotheses regarding the influence of climatic drivers (i.e., temperature and precipitation regimes) on the following six ecosystem properties: canopy height, biomass, productivity, decomposition, soil carbon density, and soil carbon accumulation. Our analyses quantify and elucidate linear and nonlinear effects of climatic drivers. We quantified positive linear relationships between temperature and above-ground productivity …


Filtering Out Parasites: Sand Crabs (Lepidopa Benedicti) Are Infected By More Parasites Than Sympatric Mole Crabs (Emerita Benedicti), Zen Faulkes Sep 2017

Filtering Out Parasites: Sand Crabs (Lepidopa Benedicti) Are Infected By More Parasites Than Sympatric Mole Crabs (Emerita Benedicti), Zen Faulkes

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Two digging decapod crustaceans, the sand crab species Lepidopa benedicti and the mole crab species Emerita benedicti, both live in the swash zone of fine sand beaches. They were examined for two parasites that infect decapod crustaceans in the region, an unidentified nematode previously shown to infect L. benedicti, and cestode tapeworm larvae, Polypocephalus sp., previously shown to infect shrimp (Litopenaeus setiferus). Lepidopa benedicti were almost always infected with both parasite species, while E. benedicti were rarely infected with either parasite species. This difference in infection pattern suggests that tapeworms are ingested during sediment feeding in …


Climate Controls Over The Net Carbon Uptake Period And Amplitude Of Net Ecosystem Production In Temperate And Boreal Ecosystems, Zheng Fu, Paul C. Stoy, Yiqi Luo, Jiquan Chen, Jian Sun, Leonardo Montagnani, Georg Wohlfahrt, Abdullah F. Rahman, Serge Rambal, Christian Bernhofer Sep 2017

Climate Controls Over The Net Carbon Uptake Period And Amplitude Of Net Ecosystem Production In Temperate And Boreal Ecosystems, Zheng Fu, Paul C. Stoy, Yiqi Luo, Jiquan Chen, Jian Sun, Leonardo Montagnani, Georg Wohlfahrt, Abdullah F. Rahman, Serge Rambal, Christian Bernhofer

School of Earth, Environmental, & Marine Sciences Faculty Publications

Highlights

  • The start of net C uptake was determined by spring temperature in DBF and EF.

  • Summer precipitation determined NEPmax anomalies in DBF and GRA.

  • Climate controls annual NEP variability by regulating CUP and NEPmax.

Abstract


The seasonal and interannual variability of the terrestrial carbon cycle is regulated by the interactions of climate and ecosystem function. However, the key factors and processes determining the interannual variability of net ecosystem productivity (NEP) in different biomes are far from clear. Here, we quantified yearly anomalies of seasonal and annual NEP, net carbon uptake period (CUP), and the maximum daily NEP (NEPmax) …


N2o Emissions From California Farmlands: A Review, Elizabeth Verhoeven, Engil Isadora Pujol Pereira, Charlotte Decock, Gina Garland, Taryn Kennedy, Emma Suddick, William Horwath, Johan Six Sep 2017

N2o Emissions From California Farmlands: A Review, Elizabeth Verhoeven, Engil Isadora Pujol Pereira, Charlotte Decock, Gina Garland, Taryn Kennedy, Emma Suddick, William Horwath, Johan Six

School of Earth, Environmental, & Marine Sciences Faculty Publications

Of the greenhouse gases emitted from cropland, nitrous oxide (N2O) has the highest global warming potential. The state of California acknowledges that agriculture both contributes to and is affected by climate change, and in 2016 it adopted legislation to help growers reduce emissions of greenhouse gases, explicitly including N2O. Nitrous oxide emissions can vary widely due to environmental and agronomic factors with most emission estimates coming from temperate grain systems. There is, however, a dearth of emission estimates from perennial and vegetable cropping systems commonly found in California's Mediterranean climate. Therefore, emission factors (EFs) specific to California conditions are needed …


T6ss Intraspecific Competition Orchestrates Vibrio Cholerae Genotypic Diversity, Benjamin Kostiuk, Daniel Unterweger, Daniele Provenzano, Stefan Pukatzki Sep 2017

T6ss Intraspecific Competition Orchestrates Vibrio Cholerae Genotypic Diversity, Benjamin Kostiuk, Daniel Unterweger, Daniele Provenzano, Stefan Pukatzki

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Vibrio cholerae is a diverse species that inhabits a wide range of environments from copepods in brackish water to the intestines of humans. In order to remain competitive, V. cholerae uses the versatile type-VI secretion system (T6SS) to secrete anti-prokaryotic and anti-eukaryotic effectors. In addition to competing with other bacterial species, V. cholerae strains also compete with one another. Some strains are able to coexist, and are referred to as belonging to the same compatibility group. Challenged by diverse competitors in various environments, different V. choleare strains secrete different combination of effectors - presumably to best suit their niche. Interestingly, …


Principal Component Regression Analysis Of Nutrition Factors And Physical Activities With Diabetes, Ke-Sheng Wang, Ying Lu, Xin Xie, Shaoqing Gong, Chun Xu, Zhanxin Sha Aug 2017

Principal Component Regression Analysis Of Nutrition Factors And Physical Activities With Diabetes, Ke-Sheng Wang, Ying Lu, Xin Xie, Shaoqing Gong, Chun Xu, Zhanxin Sha

Health & Biomedical Sciences Faculty Publications

The associations of nutrition factors and physical activities with adult diabetes are inconsistent; while most of these factors are inter correlated. The aims of this study are to overcome the disturbance of the multicollinearity of the risk factors and examine the associations of these factors with diabetes using the principal component analysis (PCA) and regression analysis with principal component scores (PCS). Totally, 659 adults with diabetes and 2827 non-diabetic were selected from the 2012 Health Information National Trends Survey (HINTS 4, Cycle 2). PCA was utilized to deal with multicollinearity of the risk factors. Weighted univariate and multiple logistic regression …


(Re)Defining Masculinity: Creando Conciencia Y Conocimiento Sobre La Educación Through Food, Jesus Aaron Sierra Aug 2017

(Re)Defining Masculinity: Creando Conciencia Y Conocimiento Sobre La Educación Through Food, Jesus Aaron Sierra

Theses and Dissertations

This thesis describes how food, culture, and class have shaped how I have acculturated, negotiated and blended Mexican and American. It highlights various themes that have shaped my educational process, including, masculinity, family values, food production, service and consumption. The proximity of South Texas to the U.S.-Mexican border plays an important role in the gastronomy of the Rio Grande Valley (RGV). This is a region where people interact across race, ethnicity and culture to create different dishes and customs surrounding food. It also demonstrates how food brings people together. The methodology used in this thesis is from the autoethnographic perspective …


Upscaling Capillary Pressure–Saturation Functions Using Different Reference Pressure Elevations, Chu-Lin Cheng, S. Clark Cropper, Edmund Perfect, Larry Mckay, Misun Kang Aug 2017

Upscaling Capillary Pressure–Saturation Functions Using Different Reference Pressure Elevations, Chu-Lin Cheng, S. Clark Cropper, Edmund Perfect, Larry Mckay, Misun Kang

School of Earth, Environmental, & Marine Sciences Faculty Publications

Choice of reference pressure elevation (RPE) on average effective saturation–capillary pressure functions, 〈〉(ψ), was investigated for monotonic drainage of homogeneous porous media. Nine columns of Flint sand with heights ranging from 4.3 to 55.0 cm were prepared. Measured 〈〉(ψ) functions were determined gravimetrically using the hanging water column method. Predicted 〈〉(ψ) functions were obtained by upscaling point function parameters determined by neutron radiographic imaging of a single drainage experiment. Bottom and midpoint RPEs resulted in the inaccurate parameterization of 〈〉(ψ) functions for tall columns. A top RPE produced accurate upscaled functions for all column heights. To evaluate the overall performance …


Impact Of Salinity Change On Water Quality Variables From The Sediment Of An Artificial Lake Under Anaerobic Conditions, Tae-Hoon Kim, James Jihoon Kang, Sang Hyun Kim, I-Song Choi, Kwang-Hyeon Chang, Jong Min Oh, Ki-Hyun Kim Aug 2017

Impact Of Salinity Change On Water Quality Variables From The Sediment Of An Artificial Lake Under Anaerobic Conditions, Tae-Hoon Kim, James Jihoon Kang, Sang Hyun Kim, I-Song Choi, Kwang-Hyeon Chang, Jong Min Oh, Ki-Hyun Kim

School of Earth, Environmental, & Marine Sciences Faculty Publications

Artificial reservoirs are created by dike construction in coastal areas to secure the agricultural water supply on the west coast of South Korea. These systems are found to retain brackish characteristics until total desalination is achieved. To evaluate the effects of salinity on the organic substances released from the sediment, a laboratory water-sediment column experiment was conducted to assess associated changes in water quality variables such as the sediment oxygen demand (SOD), chemical oxygen demand (COD), and concentrations of nitrogen (N) and phosphorus (P). Under high salinity conditions, the release of N from the sediment was promoted with the enhancement …