Life Sciences Commons^™

Characterization Of Iron Response In Gynecological Cell Lines, Kyle A. Bauckman

USF Tampa Graduate Theses and Dissertations

Ovarian carcinoma afflicts over 22,000 women each year with a 5 year survival rate of only 18% for stage IV patients [23]. Current treatment options are limited due to high rates of drug resistance and recurrence. Further, the identity of "precursor lesions" which give rise to various subclasses of epithelial ovarian cancer has been evasive. This is due to discovery of the cancer at already an advanced stage. Interestingly, endometriosis a benign but invasive gynecological disease has been described as a "precursor lesion" in the development of specific subtypes of ovarian cancer. Endometriotic cyst development involves the accumulation of "old …

Transcriptional Control Of Toxoplasma Development, Joshua Byran Radke

USF Tampa Graduate Theses and Dissertations

Toxoplasma gondii is an obligate intracellular protozoan parasite of animals and man. The asexual life cycle of Toxoplasma involves three very distinct, but tightly coordinated developmental stages. In nature, the sporozoite (contained within an oocyst) and bradyzoite (contained within a tissue cyst) initiate infection of the intermediate host, followed by rapid differentiation into the actively replicating tachyzoite. When countered by an effective host response, the tachyzoite differentiates back into the latent bradyzoite and this unique ability of Toxoplasma to interconvert between the replicating tachyzoite and the latent bradyzoite within a single host is the cause of life long infection. The …

Pathways Of Embodiment: Drug Use Among Adolescents In Popay[Aacute]N Colombia, Sarah Louise Fishleder

USF Tampa Graduate Theses and Dissertations

This research examines the interrelated biological and cultural factors that determine pathways by which recreational drug use is manifest to addiction in the lives of youth aged 12-18 in Popay[aacute]n, Colombia. It utilizes existing data from mixed methods research conducted between 2004-2005 examining epidemiological risk factors, drug use, perceptions about drugs, and a biological phenomenon of the brain known as incentive salience. Perceptions and experiences related to drugs were gathered using structured methods. MDS and hierarchical plots of drug perceptions are presented in order to demonstrate the power of culture and expectation on perception and choice. Structural equation modeling was …

Epibenthic Mobile Invertebrates Along The Florida Reef Tract: Diversity And Community Structure, Kristin Netchy

USF Tampa Graduate Theses and Dissertations

Benthic mobile invertebrates are important components of coral-reef diversity and community structure, though, in most cases, their ecological contributions are poorly known. Baseline information on their diversity, prevalence, assemblages, and ecological roles is needed to aid in the conservation of coral-reef habitats. The objectives of this study are to 1) describe diversity and assemblages of epibenthic, mobile invertebrates in shallow water coral-reef communities in Florida, 2) evaluate their ecological roles by reviewing published literature on diet, and 3) measure the degree of linear dependence between mobile invertebrates and scleractinian corals. Underwater surveys were conducted in the summer of 2013 at …

Draft Genome Sequence Of Xylella Fastidiosa Pear Leaf Scorch Strain In Taiwan, C.-C. Su, W.-L. Deng, F.-J. Jan, C.-J. Chang, Hong Huang, J. Chen

School of Information Faculty Publications

The draft genome sequence of Xylella fastidiosa pear leaf scorch strain PLS229, isolated from the pear cultivar Hengshan (Pyrus pyrifolia) in Taiwan, is reported here. The bacterium has a genome size of 2,733,013 bp, with a G+C content of 53.1%. The PLS229 genome was annotated and has 3,259 open reading frames and 50 RNA genes.

Exploration Of Mutations In Erythroid 5-Aminolevulinate Synthase That Lead To Increased Porphyrin Synthesis, Erica Jean Fratz

USF Tampa Graduate Theses and Dissertations

5-Aminolevulinate synthase (ALAS; EC 2.3.1.37) is a pyridoxal 5'-phosphate (PLP)-dependent enzyme that catalyzes the first committed step of heme biosynthesis in animals, the condensation of glycine and succinyl-CoA yielding 5-aminolevuliante (ALA), CoA, and CO2. Murine erythroid-specific ALAS (mALAS2) variants that cause high levels of PPIX accumulation provide a new means of targeted, and potentially enhanced, photosensitization. Transfection of HeLa cells with expression plasmids for mALAS2 variants, specifically for those with mutated mitochondrial presequences and a mutation in the active site loop, caused significant cellular accumulation of PPIX, particularly in the membrane. Light treatment of HeLa cells expressing mALAS2 variants revealed …

Is Sickle Cell Trait As Benign As Is Usually Assumed?, Carroll Nicole Flansburg

USF Tampa Graduate Theses and Dissertations

Abstract

Introduction Sickle cell trait carriers may experience sickling events, which can cause severe health problems. Some sickle cell haplotypes contain genetic modifiers that are associated with increased levels of fetal hemoglobin, which is resistant to sickling. The aim of this study is to determine if sickle cell trait individuals who do not carry these modifiers are more likely to experience sickling episodes than those who do carry the modifiers.

Methods: Participants were eligible for inclusion in this study if they were male, 18 years of age or older, a sickle cell trait carrier, and had previously played any level …

Agriculture, Environmental Restoration And Ecosystem Services: Assessing The Costs Of Water Storage On Agricultural Lands In South Florida, Kayla Ouellette

USF Tampa Graduate Theses and Dissertations

A large part of the environmental restoration required by the Comprehensive Everglades Restoration Plan calls for more water-storage on lands south of Lake Okeechobee in order to restore the natural water flows of the Everglades watershed. The Everglades Agricultural Area (EAA) can be used for increased water storage in order to relieve coastal estuaries of excess water in the rainy season. This water storage can deliver additional ecosystem services of soil retention and reduced CO2 emissions that could compensate farmers for the cost of water storage by increasing long term farm profitability. The goals of this study were 1) to …

Testing The Feasibility Of Bioacoustic Localization In Urban Environments, Blaire O'Neal

USF Tampa Graduate Theses and Dissertations

Bioacoustics is a relatively new field of research focused on studying the acoustic signals of vocal animal species. The field has been a topic of interest for many years due its passive approach and avoidance of species-level limitations, such as tracking rare or nocturnal species. It has been used to locate birds in terrestrial environments; however, localization in urban environments remains unstudied. This research aims to fill the gap by attempting to estimate the location of 30 discrete calls in eight unique, urban environments. Sites represented two distinct traffic scenarios: moderate traffic and high traffic. Three system arrays of three …

Combined Metal-Enhanced Fluorescence-Surface Acoustic Wave (Mef-Saw) Biosensor, Samuel Morrill

USF Tampa Graduate Theses and Dissertations

Immunofluorescence assays are capable of both detecting the amount of a protein and the location of the protein within a cell or tissue section. Unfortunately, the traditional technique is not capable of detecting concentrations on the nanoscale. Also, the technique suffers from non-specific attachment, which can cause false-positives, as well as photobleaching when detecting lower concentrations is attempted. There is also a time constraint problem since the technique can take from many hours to a few days in some cases.

In this work, metal-enhanced fluorescence (MEF) is used to lower the detection limit and reduce photobleaching. Unfortunately, MEF also increases …

Achievement Of Transplantation Tolerance: Novel Approaches And Mechanistic Insights, Joseph Pidala

USF Tampa Graduate Theses and Dissertations

Current immune suppressive strategies fail to induce donor-recipient immune tolerance after allogeneic hematopoietic cell transplantation. Accordingly, patients suffer morbidity and mortality from graft vs. host disease (GVHD) and prolonged immune suppressive therapy. Biologic insight into transplantation tolerance is needed, and translation of such insight to novel clinical strategies may improve clinical outcomes. We report original investigation at seminal phases of this process including initial prophylactic immune suppression, onset of acute graft vs. host disease, and ultimate immune suppression discontinuation: In a controlled randomized clinical trial, we demonstrate that sirolimus-based immune suppression reduces risk for acute GVHD, ameliorates the severity of …

Student Identity Considerations And Implications Associated With Socioscientific Issues Instruction, Mitchel James Ruzek

USF Tampa Graduate Theses and Dissertations

The purpose of this investigation was to explore how aspects of identity, perceived levels of controversy, and the strength of a student's attachment to their controversial identity relate to conceptual understanding and knowledge acquisition during socioscientific issues (SSI) based instruction in a biology classroom. The knowledge gained from this study will have the capacity to enhance our understanding of the role that attachment to identity plays during SSI negotiation. Additionally, insight was gained into the role played by aspects of identity in conceptual understanding of scientifically controversial topics during SSI based instruction.

This study contributed to the existing knowledge base …

Evaluation Of The Interest In Development And Availability Of The Resting Metabolic Rate Test As A Routine Healthcare Standard, Seth Wayne Parrish

USF Tampa Graduate Theses and Dissertations

Introduction: A growing worldwide pandemic exists today that has large implications for the future of healthcare among the nations. Obesity is a growing disease that has multiple

implications for morbidity and mortality including cardiovascular disease, stroke and diabetes. The obese and overweight population plagues nearly 46% of the world's population, and likely is

preventable. We wanted to examine what role metabolic testing could play in prevention.

Methods: A cross-sectional study composed of a 52-question Likert-based scale survey was constructed and distributed to healthcare providers. We hypothesized that there would be a

generally accepted interest in establishing routine metabolic rate testing …

Immature Myeloid Cells Promote Tumor Formation Via Non-Suppressive Mechanism, Myrna Lillian Ortiz

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Although there is ample evidence linking chronic inflammation with cancer, the cellular mechanisms involved in early events leading to tumor development remain unclear. Myeloid cells are an intricate part of inflammation. They consist of mature cells represented by macrophages, dendritic cells and granulocytes and a population of Immature Myeloid Cells (IMC), which in healthy individuals are cells in transition to mature cells. There is a substantial expansion of IMC in cancer and many other pathological conditions which is associated with pathologic activation of these cells. As a result, these cells acquire the ability to suppress immune responses and are …

Ube3a Role In Synaptic Plasticity And Neurodevelopmental Disorders.The Lessons From Angelman Syndrome., Irina Filonova

USF Tampa Graduate Theses and Dissertations

Angelman Syndrome (AS) is a severe neurodevelopmental disorder that affects 1:12000 newborns. It is characterized by mental retardation, delayed major motor and cognitive milestones, seizures, absence of speech and excessive laughter. The majority of AS cases arise from deletions or mutations of UBE3A gene located on the chromosome 15q11-13. UBE3A codes for E3-ubiquitin ligase that target specific proteins for degradation. To date, a wide variety of Ube3a substrates has been identified. The accumulation of Ube3a-dependent proteins and their effect on the multitude of signal transduction pathways are` considered the main cause of the AS pathology. While the majority of research …

On The Consistency Of Modis Chlorophyll $A$ Products In The Northern South China Sea, S. L. Shang, Q. Dong, Chuanmin M. Hu, G. Lin, Y. H. Li, S. P. Shang

Marine Science Faculty Publications

Chlorophyll a (Chl) concentrations derived from satellite measurements have been used in oceanographic research, for example to interpret eco-responses to environmental changes on global and regional scales. However, it is unclear how existing Chl products compare with each other in terms of accuracy and consistency in revealing temporal and spatial patterns, especially in the optically complex marginal seas. In this study, we examined three MODIS (Moderate Resolution Imaging Spectroradiometer) Chl data products that have been made available to the community by the US National Aeronautics and Space Administration (NASA) using community-accepted algorithms and default parameterization. These included the products derived …

Rna Viral Metagenome Of Whiteflies Leads To The Discovery And Characterization Of A Whitefly-Transmitted Carlavirus In North America, Karyna Rosario, Heather Capobianco, Terry Fei Fan Ng, Mya Breitbart, Jane E. Polston

Marine Science Faculty Publications

Whiteflies from the Bemisia tabaci species complex have the ability to transmit a large number of plant viruses and are some of the most detrimental pests in agriculture. Although whiteflies are known to transmit both DNA and RNA viruses, most of the diversity has been recorded for the former, specifically for the Begomovirus genus. This study investigated the total diversity of DNA and RNA viruses found in whiteflies collected from a single site in Florida to evaluate if there are additional, previously undetected viral types within the B. tabaci vector. Metagenomic analysis of viral DNA extracted from the whiteflies only …

Size, Shape And Spatial Arrangement Of Mega-Scale Glacial Lineations From A Large And Diverse Dataset, Matteo Spagnolo, Chris D. Clark, Jeremy C. Ely, Chris R. Stokes, John B. Anderson, Karin Andreassen, Alastair G. C. Graham, Edward C. King

Marine Science Faculty Publications

Mega-scale glacial lineations (MSGLs) are a characteristic landform on ice stream beds. Solving the puzzle of their formation is key to understanding how ice interacts with its bed and how this, in turn, influences the dynamics of ice streams. However, a comprehensive and detailed characterization of this landform's size, shape and spatial arrangement, which might serve to test and refine formational theories, is largely lacking. This paper presents a detailed morphometric analysis and comparison of 4043 MSGLs from eight palaeo-ice stream settings: three offshore (Norway and Antarctica), four onshore (Canada), and one from under a modern ice stream in West …

Amazon River Water In The Northeastern Caribbean Sea And Its Effect On Larval Reef Fish Assemblages During April 2009, E. M. Johns, B. A. Muhling, R. C. Perez, Frank E. Muller-Karger, N. Melo, R. H. Smith, J. T. Lamkin, T. L. Gerard, E. Malca

Marine Science Faculty Publications

During April to June 2009, a large bolus of Amazon River water impacted the northeastern Caribbean Sea. Shipboard observations collected near Saba Bank, the U.S. and British Virgin Islands, and the Anegada Passage showed low surface salinity (35.76 ± 0.05 Practical Salinity Unit (PSU)), elevated surface temperature (26.77 ± 0.14°C), high chlorophyll-a (1.26 ± 0.21 mg m-3) and high dissolved oxygen (4.90 ± 0.06 mL L-1) in a 20- to 30-m thick surface layer in the riverine plume. The water was ~1°C warmer, 1 PSU fresher, 0.3 mL L-1 higher in oxygen and 1.2 mg m-3 higher in chlorophyll-a than …

Cambios Espaciales Y Estacionales En La Hidrografía Y Bioquímica De La Región De La Fosa De Cariaco, Laura Lorenzoni, Ramon Varela, Digna Rueda, Frank Muller-Karger, Jaimie Rojas, Laurencia Guzmán, Yrene Astor, Enrique Montes

Marine Science Faculty Publications

The Cariaco Basin is a semi-enclosed basin of tectonic origin composed of two ~1400 m deep sub-basins, aligned in an east-west direction. In the eastern sub-basin, the CARIACO Ocean Time-Series project has been taking biogeochemical and ecological measurements on a regular basis since 1995. However, relatively little is known about the western sub-basin. Two oceanographic cruises (FOSA FOSA 1 and 2) in September 2008 (stratified water column; rainy season) and March 2009 (upwelling; dry season), were conducted to analyze the spatial and seasonal variation in hydrography and geochemistry of both sub-basins. During September 2008, sea surface temperature (SST) was relatively …

Anisotropic Turbulence And Rossby Waves In An Easterly Jet: An Experimental Study, Boris Galperin, Jesse Hoemann, Stefania Espa, Gabriella Di Nitto

Marine Science Faculty Publications

A westward propagating jet is investigated experimentally. The focus is on complex interaction between anisotropic turbulence with inverse energy cascade and Rossby waves. The energy spectrum is highly anisotropic. To diagnose turbulence characteristics, we explore the analogy between turbulent overturns in stably stratified and quasi-geostrophic flows and develop a novel method based upon the monotonizing of potential vorticity (PV). The RMS displacement from the monotonic PV profile yields a length scale, L_M, analogous to the Thorpe's scale used in flows with stable stratification. As the Thorpe scale is proportional to the Ozmidov scale, the scale L_M is …

Terrestrial And Submarine Evidence For The Extent And Timing Of The Last Glacial Maximum And The Onset Of Deglaciation On The Maritime-Antarctic And Sub-Antarctic Islands, Dominic A. Hodgson, Alastair G. C. Graham, Stephen J. Roberts, Michael J. Bentley, Colm Ó. Cofaigh, Elie Verleyen, Wim Vyverman, Vincent Jomelli, Vincent Favier, Daniel Brunstein, Deborah Verfaillie, Eric A. Colhoun, Krystyna M. Saunders, Patricia M. Selkirk, Andrew Mackintosh, David W. Hedding, Werner Nel, Kevin Hall, Matt S. Mcglone, Nathalie Van Der Putten, William A. Dickens, James A. Smith

Marine Science Faculty Publications

This paper is the maritime and sub–Antarctic contribution to the Scientific Committee for Antarctic Research (SCAR) Past Antarctic Ice Sheet Dynamics (PAIS) community Antarctic Ice Sheet reconstruction. The overarching aim for all sectors of Antarctica was to reconstruct the Last Glacial Maximum (LGM) ice sheet extent and thickness, and map the subsequent deglaciation in a series of 5000 year time slices. However, our review of the literature found surprisingly few high quality chronological constraints on changing glacier extents on these timescales in the maritime and sub–Antarctic sector. Therefore, in this paper we focus on an assessment of the terrestrial and …

A New Bathymetric Compilation For The South Orkney Islands Region, Antarctic Peninsula (49°–39°W To 64°–59°S): Insights Into The Glacial Development Of The Continental Shelf, William A. Dickens, Alastair G. C. Graham, James A. Smith, Julian A. Dowdeswell, Robert D. Larter, Claus-Dieter Hillenbrand, Phil N. Trathan, Jan Erik Arndt, Gerhard Kuhn

Marine Science Faculty Publications

We present a new, high resolution (300 m) bathymetric grid of the continental shelf surrounding the South Orkney Islands, northeast of the Antarctic Peninsula. The new grid, derived from a compilation of marine echo-sounding data, improves previous regional bathymetric representations and helps to visualize the morphology of the shelf in unrivalled detail. The compilation forms important baseline information for a range of scientific applications and end users including oceanographers, glacial modelers, biologists, and geologists. In particular, due to the limited understanding of glacial history in this region, the bathymetry provides the first detailed insights into past glacial regimes. The continental …

Seawater Ph Measurements In The Field: A Diy Photometer With 0.01 Unit Ph Accuracy, Bo Yang, Mark C. Patsavas, Robert H. Byrne, Jian Ma

Marine Science Faculty Publications

A portable light-emitting-diode (LED) photometer has been developed to provide low-cost seawater pH measurements. The benefits of the new system include a simple “do-it-yourself” construction design, a hundredfold reduction in cost relative to benchtop spectrophotometric systems, routine calibration-free operation in the field, and precision and accuracy well suited to applications such as education, coastal zone monitoring (including citizen science programs), and aquaculture and aquarium management. The photometer uses a high-sensitivity light-to-voltage integrated circuit as a detector, two LED light sources, and an open-source Arduino microcontroller for system control and data processing. Measurements are based on observations of absorbances of a …

Coherent Sea Level Variability On The North Atlantic Western Boundary, P. R. Thompson, G. T. Mitchum

Marine Science Faculty Publications

Interannual to decadal sea level variability on the North Atlantic western boundary is surprisingly coherent over substantial distances stretching from the Caribbean to Nova Scotia. The physical mechanisms responsible for this basin-scale, low-frequency coherence are explored in a diagnosis of simulated ocean fields from GECCO, which reproduces the observations to good approximation. Coastal sea level variability on the western boundary is known to be influenced by meridional divergence in the boundary current resulting in a geostrophic tilting of the sea surface. This mechanism is found to be of leading order along some stretches of the boundary, but it does not …

Assessing The In Situ Fertilization Status Of Two Marine Copepod Species, Temora Longicornis And Eurytemora Herdmani; How Common Are Unfertilized Eggs In Nature?, Rachel S. Lasley-Rasher, Andrew M. Kramer, Victoria Burdett-Coutts, Jeannette Yen

Integrative Biology Faculty and Staff Publications

We utilized an egg staining technique to measure the in situ fertilization success of two marine copepod species, Temora longicornis and Eurytemora herdmani from May to October 2008 in coastal Maine and correlated fertilization success with environmental conditions in their habitat. T. longicornis is a free spawning species that releases eggs into the ambient seawater after mating. In contrast, E. herdmani carries eggs in an egg sac until they hatch. The proportion of fertilized eggs within E. herdmani egg sacs was significantly higher than the freely spawned clutches of T. longicornis. This may be a result of the asymmetrical costs …

Deep-Sea Octopus (Graneledone Boreopacifica) Conducts The Longest-Known Egg-Brooding Period Of Any Animal, Bruce Robison, Brad Seibel, Jeffrey Drazen

Marine Science Faculty Publications

Octopuses typically have a single reproductive period and then they die (semelparity). Once a clutch of fertilized eggs has been produced, the female protects and tends them until they hatch. In most shallow-water species this period of parental care can last from 1 to 3 months, but very little is known about the brooding of deep-living species. In the cold, dark waters of the deep ocean, metabolic processes are often slower than their counterparts at shallower depths. Extrapolations from data on shallow-water octopus species suggest that lower temperatures would prolong embryonic development periods. Likewise, laboratory studies have linked lower temperatures …

Characterizing The Impact And Response Of Deep Sea Benthic Foraminifera To The Deepwater Horizon Event In The Northeastern Gulf Of Mexico, Patrick Schwing, Isabel C. Romero, Gregg Brooks, David W. Hastings, Rebekka Larson, L. M. Reilly, David J. Hollander, Jeff P. Chanton

Marine Science Faculty Publications

Sediment cores were collected from the Gulf of Mexico to assess the benthic foraminifera (BF) community structure changes in response to the Deepwater Horizon (DWH) event. Short-lived radioisotope geochronologies (210Pb and 234Th), organic geochemical toxicity assessments, and redox metal concentrations were determined to relate changes in sedimentation rate, toxicity levels, and redox conditions with BF abundance. Records from December 2010 document a community-wide decrease in abundance in the upper 10 mm relative to the down-core mean. There is also depletion in the δ13C and Δ14C records of BF calcite (relative to down-core values) that is synchronous with the timing of …

Rapid Changes In The Seasonal Sea Level Cycle Along The Us Gulf Coast From The Late 20th Century, Thomas Wahl, Francisco M. Calafat, Mark E. Luther

Marine Science Faculty Publications

Temporal variations of the seasonal sea level harmonics throughout the 20th and early 21st century along the United States Gulf coast are investigated. A significant amplification of the annual sea level cycle from the 1990s onward is found, with both lower winter and higher summer sea levels in the eastern Gulf. Ancillary data are used to build a set of multiple regression models to explore the mechanisms driving the decadal variability and recent increase in the annual cycle. The results suggest that changes in the air surface temperature toward warmer summers and colder winters and changes in mean sea level …

Densovirus Associated With Sea-Star Wasting Disease And Mass Mortality, Ian Hewson, Jason Button, Brent Gudenkauf, Benjamin Miner, Alisa Newton, Mya Breitbart, Elizabeth Fahsbender, Kevin Lafferty

Marine Science Faculty Publications

Sea stars inhabiting the Northeast Pacific Coast have recently experienced an extensive outbreak of wasting disease, leading to their degradation and disappearance from many coastal areas. In this paper, we present evidence that the cause of the disease is transmissible from disease-affected animals to apparently healthy individuals, that the disease-causing agent is a virus-sized microorganism, and that the best candidate viral taxon, the sea star-associated densovirus (SSaDV), is in greater abundance in diseased than in healthy sea stars.