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Articles 1381 - 1410 of 2279

Full-Text Articles in Life Sciences

Population Genetics And Epigenetics Of Two Salt Marsh Plant Species Along An Environmental Gradient, Christy M. Foust Nov 2015

Population Genetics And Epigenetics Of Two Salt Marsh Plant Species Along An Environmental Gradient, Christy M. Foust

USF Tampa Graduate Theses and Dissertations

Phenotypic plasticity is the ability of a given genotype to exhibit different phenotypes in response to environmental variables, which can impact population level processes. Plasticity of ecologically-relevant traits is important to an organism’s environmental response; however, the underlying mechanisms of plasticity are largely unknown. Ecological epigenetics may offer mechanisms (e.g. DNA methylation) underlying phenotypic plasticity. Epigenetics can be defined as the underlying molecular mechanisms that allow one genotype to exhibit different phenotypes. Differential DNA methylation is one epigenetic mechanism that has been correlated with a number of ecologically-relevant traits; including, differential herbivory in Viola cazorlensis, spinescence in Ilex aquifolium …

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The Development Of A Fluorescence-Based Reverse Flow Injection Analysis (Rfia) Method For Quantifying Ammonium At Nanomolar Concentrations In Oligotrophic Seawater, William Abbott Nov 2015

The Development Of A Fluorescence-Based Reverse Flow Injection Analysis (Rfia) Method For Quantifying Ammonium At Nanomolar Concentrations In Oligotrophic Seawater, William Abbott

USF Tampa Graduate Theses and Dissertations

The goal of this thesis was to adopt a reverse flow injection analysis (rFIA) technique to the fluorometric analysis of the reaction o-phthaldialdehyde (OPA) with ammonium, allowing accurate measurements of ammonium concentrations lower than the detection limit of the widely used indophenol blue (IPB) colorimetric method while accounting for the background fluorescence of seawater. Ammonium is considered an essential nutrient for primary productivity, especially in the nutrient depleted surface ocean where as the most reduced form of dissolved inorganic nitrogen, it is readily assimilated via metabolic pathways. Challenges in the quantification of ammonium require more sensitive analytical techniques for …

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North American River Otter (Lontra Canadensis) Presence And Habitat Analysis In Florida As Compared To Historical Data, Samantha Wilber Nov 2015

North American River Otter (Lontra Canadensis) Presence And Habitat Analysis In Florida As Compared To Historical Data, Samantha Wilber

USF Tampa Graduate Theses and Dissertations

North American river otters are considered common in the state of Florida, but their populations have not been studied since the 1980’s. Since that time, Florida’s human population has more than doubled, and many natural areas of Florida have been developed. The aim of this study was to determine the presence or absence of river otters at locations in Florida which they historically inhabited. Forty-six sample sites where otters were historically found were obtained from the Florida Museum of Natural History Mammals Master Database (FMNH MMD). These sites were condensed to two focus areas, in and around Alachua and Collier …

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Identifying Humanized Ecosystems: Anthropogenic Impacts, Intentionality, And Resource Acquisition At Crystal River (8ci1) And Roberts Island (8ci41), Charles Trevor Duke Nov 2015

Identifying Humanized Ecosystems: Anthropogenic Impacts, Intentionality, And Resource Acquisition At Crystal River (8ci1) And Roberts Island (8ci41), Charles Trevor Duke

USF Tampa Graduate Theses and Dissertations

The impact of human activity on ecosystems is an issue at the forefront of global concern. Marine ecosystems are a particular concern, given their importance for human sustenance. Through the removal of species that are highly susceptible to the effects of overfishing, global fisheries have been driven to near collapse in recent decades. The long-term effects of such practices has resulted in declines in mean trophic level of aggregate fish catches over time, as well as decreasing diversity of species available for regular harvest (Jackson et al. 2001; Pauly et al. 1998). These supposedly “modern” problems have been recently identified …

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Basal Salivary Oxytocin And Skin To Skin Contact Among Lactating Mothers Of Premature Infants, Jessica Marie Gordon Nov 2015

Basal Salivary Oxytocin And Skin To Skin Contact Among Lactating Mothers Of Premature Infants, Jessica Marie Gordon

USF Tampa Graduate Theses and Dissertations

This dissertation research explored mechanisms of human milk (HM) expulsion by describing the effects of skin to skin contact (SSC) on maternal basal oxytocin (OT) secretion among 20 premature mothers with hospitalized premature infants. This one-group, repeated measures design consisted of: 1) daily SSC with covariant data via self-report diary and 2) maternal salivary OT with and without SSC at 4 time points were collected over a 7 day time frame. Results indicate that mean levels of basal OT increase over time (M 234 pg/ml, SD 108 pg/ml time point 1; M 257 pg/ml, SD 125 pg/ml time point 3). …

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In Situ Studies Of Limestone Dissolution In A Coastal Submarine Spring, Rachel Marie Schweers Nov 2015

In Situ Studies Of Limestone Dissolution In A Coastal Submarine Spring, Rachel Marie Schweers

USF Tampa Graduate Theses and Dissertations

Limestone dissolution in karst environments is likely due to geochemistry of the water, the actions of microbial communities, and the effect of water flow. We explored the rate of limestone dissolution and will examine here the microbial communities associated with the limestone. A conduit within the brackish cave, Double Keyhole Spring, on the coast of central west Florida was the site of the experiment. PVC pipes (5cm x 16cm) were filled with crushed limestone that was screened to a 1.9cm – 2.54cm size range. There were three treatments (5 replicates each): Control - sealed autoclaved controls with limestone and conduit …

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Emergent Insect And Neotropical Migratory Bird Interactions And Responses To Habitat, Hydrology, And Progressive Urbanization In The Tampa Bay Region, Nathaniel Lee Goddard Nov 2015

Emergent Insect And Neotropical Migratory Bird Interactions And Responses To Habitat, Hydrology, And Progressive Urbanization In The Tampa Bay Region, Nathaniel Lee Goddard

USF Tampa Graduate Theses and Dissertations

The growing human population threatens the many of the earth’s biological systems. In the last 600 years extinction rates risen from 1 extinction per million species per year (E/MSY) in the 1400’s to 50 E/MSY today. During this time period 1.5% of all known birds have gone extinct, because they could not adapt quickly enough to human mediated changes. The goal of this dissertation was to determine how urbanization and anthropogenic services needed to support urban areas impact cypress dome wetland aquatic insect and migratory bird populations that depend on them. In Central Florida cypress dome hydroperiods are driven by …

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Secchi Disk Depth: A New Theory And Mechanistic Model For Underwater Visibility, Zhongping Lee, Shaoling Shang, Chuanmin Hu, Keping Du, Alan Weidemann, Weilin Hou, Junfang Lin, Gong Lin Nov 2015

Secchi Disk Depth: A New Theory And Mechanistic Model For Underwater Visibility, Zhongping Lee, Shaoling Shang, Chuanmin Hu, Keping Du, Alan Weidemann, Weilin Hou, Junfang Lin, Gong Lin

Marine Science Faculty Publications

Secchi disk depth (ZSD) is a measure of water transparency, whose interpretation has wide applications from diver visibility to studies of climate change. This transparency has been explained in the past 60 + years with the underwater visibility theory, the branch of the general visibility theory for visual ranging in water. However, through a thorough review of the physical processes involved in visual ranging in water, we show that this theory may not exactly represent the sighting of a Secchi disk by a human eye. Further, we update the Law of Contrast Reduction, a key concept in visibility …

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A Bat-Guano-Derived Δ15N And Δ13C Record Of Paleoenvironmental Change: Zidită Cave, Romania, Daniel Martin Cleary Oct 2015

A Bat-Guano-Derived Δ15N And Δ13C Record Of Paleoenvironmental Change: Zidită Cave, Romania, Daniel Martin Cleary

USF Tampa Graduate Theses and Dissertations

Because nitrogen isotopes are fractionated along the soil-plant-insect-bat-guano pathway, it may be possible to reconstruct environmental and climatic changes reflected in the nitrogen isotopic composition of guano. A 1.5-m core of bat guano from Zidită Cave (western Romania) provides a record of climatic and anthropogenic influence on the regional nitrogen cycle and paleoenvironmental controls on nitrogen transforming processes. Increasing and decreasing trends of nitrogen isotopic composition (δ15N values) correspond well with changes in the influence of farming practices, deforestation, and forest expansion. These influences likely had a significant effect on the openness of the nitrogen cycle, resulting in …

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Seeps And Springs At A Platteville “Observatory” On The River Bluffs, Bj Bonin, Greg Brick, Julia R. Steenberg Oct 2015

Seeps And Springs At A Platteville “Observatory” On The River Bluffs, Bj Bonin, Greg Brick, Julia R. Steenberg

Sinkhole Conference 2015

Residential building construction along the Mississippi River bluffs in the 1970s created a unique enclosed outcrop of the Late Ordovician Platteville Formation at Lilydale, Minnesota. This outcrop was examined in early 2013 after a newly-formed spring flooded an elevator shaft the previous year, drawing attention to the foundation conditions. The Lexington Riverside property is a six story condominium complex constructed within the top of the bluff. A two-level underground parking garage was built into the bluff. Bedrock was mechanically excavated to accommodate the construction of the building, creating an unweathered rock surface. The space between the structure and the excavated …

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Structure Based Drug Design Targeting Bacterial Antibiotic Resistance And Alzheimer's Disease, Eric Michael Lewandowski Oct 2015

Structure Based Drug Design Targeting Bacterial Antibiotic Resistance And Alzheimer's Disease, Eric Michael Lewandowski

USF Tampa Graduate Theses and Dissertations

Structure based drug design is a rapidly advancing discipline that examines how protein targets structurally interact with small molecules, or known inhibitors, and then uses this information to lead inhibitor optimization efforts. In the case of novel inhibitors, protein structural information is first obtained via X-ray crystallography, NMR studies, or a combination of both approaches. Then, computational molecular docking is often used to screen, in silico, millions of small molecules and calculate the potential interactions they may have with the target protein’s binding pocket, in hopes of identifying novel low affinity inhibitors. By examining the interactions these small, low affinity, …

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Characterization And Diurnal Measurement Of Oral Inflammation In Association With Glycemic Control, Periodontal Status, & Glucose Stimulation, Melanie N. Kuehl Oct 2015

Characterization And Diurnal Measurement Of Oral Inflammation In Association With Glycemic Control, Periodontal Status, & Glucose Stimulation, Melanie N. Kuehl

USF Tampa Graduate Theses and Dissertations

Diabetes has afflicted 8.3%, approximately 25.8 million, of the United States population and is the seventh leading cause of death [1]. Type I diabetes (T1D) accounts for 5 to 10% of all diagnosed cases of diabetes in the United States [2]. If present trends continue, the rate of T1D incidence among children under the age of 14 will increase by 3% globally [3]. T1D is an autoimmune disorder in which the β-cells of the pancreatic islets are destroyed, leading to high blood sugar. Hyperglycemia and loss of immunological tolerance to self-antigens are common associations of T1D [4]. Periodontal disease impacts …

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Technology For Ocean Acidification Research: Needs And Availability, Todd R. Martz, Kendra L. Daly, Robert H. Byrne, Jonathan H. Stillman, Daniela Turk Oct 2015

Technology For Ocean Acidification Research: Needs And Availability, Todd R. Martz, Kendra L. Daly, Robert H. Byrne, Jonathan H. Stillman, Daniela Turk

Marine Science Faculty Publications

Diverse instruments, both custom built and commercially available, have been used to measure the properties of the aqueous CO2 system in seawater at differing levels of autonomy (automated benchtop, continuous underway, autonomous in situ). In this review, we compare the capabilities of commercially available instruments with the needs of oceanographers in order to highlight major shortfalls in the state-of-the art instrumentation broadly available to the ocean acidification (OA) scientific community. In addition, we describe community surveys that identify needs for continued development and refinement of sensor and instrument technologies, expansion of programs that provide Certified Reference Materials, development of …

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Southern Exposure: New Paleoclimate Insights From Southern Ocean And Antarctic Margin Sediments, Amelia E. Shevenell, Steven M. Bohaty Oct 2015

Southern Exposure: New Paleoclimate Insights From Southern Ocean And Antarctic Margin Sediments, Amelia E. Shevenell, Steven M. Bohaty

Marine Science Faculty Publications

Much of what is known about the evolution of Antarctica’s cryosphere in the geologic past is derived from ice-distal deep-sea sedimentary records. Recent advances in drilling technology and climate proxy methods have made it possible to retrieve and interpret high-quality ice-proximal sedimentary sequences from Antarctica’s margins and the Southern Ocean. These records contain a wealth of information about the individual histories of the East and West Antarctic Ice Sheets and associated temperature change in the circum-Antarctic seas. Emerging studies of Antarctic drill cores provide evidence of dynamic climate variability on both short and long timescales over the past 20 million …

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Detection Of Floating Oil Anomalies From The Deepwater Horizon Oil Spill With Synthetic Aperture Radar, Oscar Garcia-Pineda, Ian Macdonald, Chuanmin Hu, Jan Svejkovsky, Mark Hess, Dmitry Dukhovskoy, Steven L. Morey Oct 2015

Detection Of Floating Oil Anomalies From The Deepwater Horizon Oil Spill With Synthetic Aperture Radar, Oscar Garcia-Pineda, Ian Macdonald, Chuanmin Hu, Jan Svejkovsky, Mark Hess, Dmitry Dukhovskoy, Steven L. Morey

C-IMAGE Publications

Detection of oil floating on the ocean surface, and particularly thick layers of it, is crucial for emergency response to oil spills. While detection of oil on the ocean surface is possible under moderate sea-state conditions using a variety of remote-sensing methods, estimation of oil layer thickness is technically challenging. In this paper, we used synthetic aperture radar (SAR) imagery collected during the Deepwater Horizon oil spill and the Texture Classifier Neural Network Algorithm (TCNNA) to identify the spill’s extent. We then developed an oil emulsion detection algorithm using TCNNA outputs to enhance the contrast of pixels within the oil …

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Meta-Omic Signatures Of Microbial Metal And Nitrogen Cycling In Marine Oxygen Minimum Zones, Jennifer B. Glass, Cecilia B. Kretz, Sangita Ganesh, Piyush Ranjan, Sherry L. Seston, Kristen N. Buck, William M. Landing, Peter L. Morton, James W. Moffett, Stephen J. Giovannoni, Kevin L. Vergin, Frank J. Stewart Sep 2015

Meta-Omic Signatures Of Microbial Metal And Nitrogen Cycling In Marine Oxygen Minimum Zones, Jennifer B. Glass, Cecilia B. Kretz, Sangita Ganesh, Piyush Ranjan, Sherry L. Seston, Kristen N. Buck, William M. Landing, Peter L. Morton, James W. Moffett, Stephen J. Giovannoni, Kevin L. Vergin, Frank J. Stewart

Marine Science Faculty Publications

Iron (Fe) and copper (Cu) are essential cofactors for microbial metalloenzymes, but little is known about the metalloenyzme inventory of anaerobic marine microbial communities despite their importance to the nitrogen cycle. We compared dissolved O2, NO3−" role="presentation">−3, NO2−" role="presentation">−2, Fe and Cu concentrations with nucleic acid sequences encoding Fe and Cu-binding proteins in 21 metagenomes and 9 metatranscriptomes from Eastern Tropical North and South Pacific oxygen minimum zones and 7 metagenomes from the Bermuda Atlantic Time-series Station. Dissolved Fe concentrations increased sharply at upper oxic-anoxic transition zones, with the highest Fe:Cu molar ratio (1.8) occurring at …

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Photoacoustic Calorimetry Studies Of The Earliest Events In Horse Heart Cytochrome-C Folding, Tarah A. Word Sep 2015

Photoacoustic Calorimetry Studies Of The Earliest Events In Horse Heart Cytochrome-C Folding, Tarah A. Word

USF Tampa Graduate Theses and Dissertations

The protein folding problem involves understanding how the tertiary structure of a protein is related to its primary structure. Hence, understanding the thermodynamics associated with the rate-limiting steps for the formation of the earliest events in folding is most crucial to understanding how proteins adopt native secondary and tertiary structures. In order to elucidate the mechanism and pattern of protein folding, an extensively studied protein, Cytochrome-c (Cc), was chosen as a folding system to obtain detailed time-resolved thermodynamic profiles for the earliest events in the protein folding process. Cytochrome-c is an ideal system for understanding the folding process for several …

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A Forward Genetic Screen Identifies Factors Associated With Fever Pathogenesis In Plasmodium Falciparum, Phaedra J. Thomas Sep 2015

A Forward Genetic Screen Identifies Factors Associated With Fever Pathogenesis In Plasmodium Falciparum, Phaedra J. Thomas

USF Tampa Graduate Theses and Dissertations

Infectious diseases that spread from person-to-person and continent-to-continent are a cause for concern for any health entity. One such disease is malaria, a mosquito-borne infection instigated by the protozoan parasite, Plasmodium falciparum. Hundreds of millions of people are affected annually and it is responsible for nearly 1 million deaths. It is the most fatal species causing malaria and proliferates in human red blood cells with a life cycle occurring every 48 hours. At this time, the parasite’s late stage form or schizont bursts from the erythrocyte releasing immune-inducing particles and infective forms (merozoites) into the bloodstream. The merozoites go …

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Function Of Long Noncoding Rnas In Breast Cancer, Edward J. Richards Sep 2015

Function Of Long Noncoding Rnas In Breast Cancer, Edward J. Richards

USF Tampa Graduate Theses and Dissertations

Breast cancer is a disease that will be diagnosed in about 1 in 10 women throughout their lifetime. The majority of breast cancers are originated from the epithelial cells of the mammary ducts, and this occurrence can be due to several factors including hereditary and acquired mutation. There are several major breast cancer subtypes, including estrogen receptor-α (ERα)-positive, HER2-enriched and triple-negative (TNBC). Patients diagnosed with ER+ tumors are generally treated with estrogen blockers (e.g., tamoxifen, letrozole and fulvestrant). Patients with HER2+ tumors are commonly administered with drugs that block HER2 signaling (e.g., trastuzumab) or inhibit HER2’s tyrosine kinase activity (e.g., …

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Effects Of Nicotine On A Translational Model Of Working Memory, David Alderson Macqueen Sep 2015

Effects Of Nicotine On A Translational Model Of Working Memory, David Alderson Macqueen

USF Tampa Graduate Theses and Dissertations

Cognitive research with human non-smokers has demonstrated that nicotine generally enhances performance on tasks of attention but, working memory does not appear to be affected. In contrast, nicotine has been shown to produce robust enhancements of working memory in non-human animals. To address this disparity, the present study investigated the effects of nicotine (2mg, 4mg nicotine gum, and placebo) on the performance of 30 non-smokers (15 male) completing a working memory task developed for rodents (the odor span task, OST). Nicotine has been reported to enhance OST performance in rodents and the present study sought to determine whether the effect …

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World’S Largest Macroalgal Blooms Altered Phytoplankton Biomass In Summer In The Yellow Sea: Satellite Observations, Qianguo Xing, Chuanmin Hu, Danling Tang, Liqiao Tian, Shilin Tang, Xiao Hua Wang, Mingjing Lou, Xuelu Gao Sep 2015

World’S Largest Macroalgal Blooms Altered Phytoplankton Biomass In Summer In The Yellow Sea: Satellite Observations, Qianguo Xing, Chuanmin Hu, Danling Tang, Liqiao Tian, Shilin Tang, Xiao Hua Wang, Mingjing Lou, Xuelu Gao

Marine Science Faculty Publications

Since 2008, the world’s largest blooms of the green macroalgae, Ulva prolifera, have occurred every summer in the Yellow Sea, posing the question of whether these macroalgal blooms (MABs) have changed the phytoplankton biomass due to their perturbations of nutrient dynamics. We have attempted to address this question using long-term Moderate Resolution Imaging Spectroradiometer (MODIS) observations. A new MODIS monthly time-series of chlorophyll-a concentrations (Chl-a, an index of phytoplankton biomass) was generated after removing the macroalgae-contaminated pixels that were characterized by unexpectedly high values in the daily Chl-a products. Compared with Chl-a during July of 2002–2006 (the pre-MAB period), Chl-a …

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Interpretation Of Complexometric Titration Data: An Intercomparison Of Methods For Estimating Models Of Trace Metal Complexation By Natural Organic Ligands, Ivanka Pižeta, Sylvia Sander, Robert Hudson, Dario Omanović, Oliver Baars, Katherine Barbeau, Kristen N. Buck, Randelle Bundy, Gonzalo Carrasco, Peter Croot, Cédric Garnier, Louise Gerringa, Martha Gledhill, Katsumi Hirose, Yoshiko Kondo, Luis Laglera, Jochen Nuester, Micha Rijkenberg, Shigenobu Takeda, Benjamin Twining, Mona C. Wells Mona C. Wells Jul 2015

Interpretation Of Complexometric Titration Data: An Intercomparison Of Methods For Estimating Models Of Trace Metal Complexation By Natural Organic Ligands, Ivanka Pižeta, Sylvia Sander, Robert Hudson, Dario Omanović, Oliver Baars, Katherine Barbeau, Kristen N. Buck, Randelle Bundy, Gonzalo Carrasco, Peter Croot, Cédric Garnier, Louise Gerringa, Martha Gledhill, Katsumi Hirose, Yoshiko Kondo, Luis Laglera, Jochen Nuester, Micha Rijkenberg, Shigenobu Takeda, Benjamin Twining, Mona C. Wells Mona C. Wells

Marine Science Faculty Publications

With the common goal of more accurately and consistently quantifying ambient concentrations of free metal ions and natural organic ligands in aquatic ecosystems, researchers from 15 laboratories that routinely analyze trace metal speciation participated in an intercomparison of statistical methods used to model their most common type of experimental dataset, the complexometric titration. All were asked to apply statistical techniques that they were familiar with to model synthetic titration data that are typical of those obtained by applying state-of-the-art electrochemical methods – anodic stripping voltammetry (ASV) and competitive ligand equilibration-adsorptive cathodic stripping voltammetry (CLE-ACSV) – to the analysis of natural …

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Sedimentation Pulse In The Ne Gulf Of Mexico Following The 2010 Dwh Blowout, Gregg R. Brooks, Rebekka A. Larson, Patrick Schwing, Isabel C. Romero, Christopher Moore, Gert-Jan Reichart, Tom Jilbert, Jeff P. Chanton, David W. Hastings, Will A. Overholt, Kala P. Marks, Joel E. Kostka, Charles W. Holmes, David Hollander Jul 2015

Sedimentation Pulse In The Ne Gulf Of Mexico Following The 2010 Dwh Blowout, Gregg R. Brooks, Rebekka A. Larson, Patrick Schwing, Isabel C. Romero, Christopher Moore, Gert-Jan Reichart, Tom Jilbert, Jeff P. Chanton, David W. Hastings, Will A. Overholt, Kala P. Marks, Joel E. Kostka, Charles W. Holmes, David Hollander

Marine Science Faculty Publications

The objective of this study was to investigate the impacts of the Deepwater Horizon (DWH) oil discharge at the seafloor as recorded in bottom sediments of the DeSoto Canyon region in the northeastern Gulf of Mexico. Through a close coupling of sedimentological, geochemical, and biological approaches, multiple independent lines of evidence from 11 sites sampled in November/December 2010 revealed that the upper ~1 cm depth interval is distinct from underlying sediments and results indicate that particles originated at the sea surface. Consistent dissimilarities in grain size over the surficial ~1 cm of sediments correspond to excess 234Th depths, which …

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Aspirin Triggered Resolution Phase Interaction Product D1: A Novel Treatment For Hyperoxic Acute Lung Injury, Ruan Rollin Cox, Jr. Jul 2015

Aspirin Triggered Resolution Phase Interaction Product D1: A Novel Treatment For Hyperoxic Acute Lung Injury, Ruan Rollin Cox, Jr.

USF Tampa Graduate Theses and Dissertations

Acute Lung injury (ALI) and the more severe acute respiratory distress syndrome (ARDS) are respiratory maladies that present immense clinical challenges. ALI affects 200,000 individuals annually and features a 40% mortality rate. ALI can be initiated by both pathogenic and sterile insults originating locally in the lungs or systemically. While immense research has been poured into this disease in an effort to find a therapeutic strategy, the heterogeneously diffuse nature of the disease has not yielded a cure for the disease. Death from this disease is strongly attributed to reduced gas exchange from a severely compromised alveolar-capillary barrier. The only …

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Seasonal Dynamics And Micro-Climatic Preference Of Two Alpine Endemic Hypogean Beetles, Stefano Mammola, Elena Piano, Pier Mauro Giachino, Marco Isaia Jun 2015

Seasonal Dynamics And Micro-Climatic Preference Of Two Alpine Endemic Hypogean Beetles, Stefano Mammola, Elena Piano, Pier Mauro Giachino, Marco Isaia

International Journal of Speleology

Hypogean beetles generally live in stable environments, characterized by constant temperature and high relative humidity. Changes in the underground microclimatic conditions generally induce local migrations of the beetles through the hypogean environment in search of suitable microhabitats. We studied the seasonal dynamics and the micro-climatic preference of two Alpine endemic hypogean beetles - Sphodropsis ghilianii (Coleoptera, Carabidae) and Dellabeffaella roccae (Coleoptera, Cholevidae) - in the hypogean complex of Pugnetto (Graian Alps, Italy). We surveyed the two species for one year, using baited pitfall traps and measuring temperature and humidity along the two main caves. We used logistic regression mixed models …

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Hydrocarbons In Deep-Sea Sediments Following The 2010 Deepwater Horizon Blowout In The Northeast Gulf Of Mexico, Isabel C. Romero, Patrick Schwing, Gregg R Brooks, Rebekka A Larson, David W. Hastings, Greg Ellis, Ethan Goddard, David Hollander May 2015

Hydrocarbons In Deep-Sea Sediments Following The 2010 Deepwater Horizon Blowout In The Northeast Gulf Of Mexico, Isabel C. Romero, Patrick Schwing, Gregg R Brooks, Rebekka A Larson, David W. Hastings, Greg Ellis, Ethan Goddard, David Hollander

Marine Science Faculty Publications

The Deepwater Horizon (DWH) spill released 4.9 million barrels of oil into the Gulf of Mexico (GoM) over 87 days. Sediment and water sampling efforts were concentrated SW of the DWH and in coastal areas. Here we present geochemistry data from sediment cores collected in the aftermath of the DWH event from 1000-1500 m water depth in the DeSoto Canyon, NE of the DWH wellhead. Cores were analyzed at high-resolution (at 2 mm and 5 mm intervals) in order to evaluate the concentration, composition and input of hydrocarbons to the seafloor. Specifically, we analyzed total organic carbon (TOC), aliphatic, polycyclic …

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Cave Cyanobacteria Showing Antibacterial Activity, Vasiliki Lamprinou, Kyriaki Tryfinopoulou, Emmanuel N. Velonakis, Alkiviadis Vatopoulos, Smaragdi Antonopoulou, Elizabeth Fragopoulou, Adriani Pantazidou, Athena Economou-Amilli May 2015

Cave Cyanobacteria Showing Antibacterial Activity, Vasiliki Lamprinou, Kyriaki Tryfinopoulou, Emmanuel N. Velonakis, Alkiviadis Vatopoulos, Smaragdi Antonopoulou, Elizabeth Fragopoulou, Adriani Pantazidou, Athena Economou-Amilli

International Journal of Speleology

Cave Cyanobacteria - thriving in an ‘extreme’ environment with interesting species biodiversity - are supposed to be a potential source of bioactive compounds. Lipid extracts from pure cultures of two recently established Cyanobacteria from Greek caves, Toxopsis calypsus and Phormidium melanochroun, were used for antibacterial screening against human pathogenic bacteria (reference and clinical isolates). Antimicrobial Susceptibility testing for both taxa was carried out using the disc-diffusion (Kirby Bauer) method, while preliminary data applying the standard broth microdilution method for the determination of the Minimal Inhibitory Concentration (MIC) are given only for T. calypsus. Antibacterial activity was demonstrated against the …

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Characterization And Fluorescence Of Yellow Biofilms In Karst Caves, Southwest Slovenia, Janez Mulec, Andreea Oarga-Mulec, Rok Tomazin, Tadeja Matos May 2015

Characterization And Fluorescence Of Yellow Biofilms In Karst Caves, Southwest Slovenia, Janez Mulec, Andreea Oarga-Mulec, Rok Tomazin, Tadeja Matos

International Journal of Speleology

Biofilms of different colours that colonize surfaces within karst caves represent a source of nutrients. They occur commonly and abundantly at sites with sediments, and close to seepages or underground rivers. Golden-yellow subaerial biofilms are particularly well observed because of their contrast with their surroundings, the characteristics of the pigment and recently, even more, due to the characteristics of light-emitting diode (LED) illumination. Yellow microbial biofilms were sampled from three caves in southwestern Slovenia, Dimnice, Križna jama and Sveta jama. The highest concentration of cultivable microbes (2.33×108 CFU/g) and the biggest number of identified bacteria (66.0%) were retrieved from …

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An Investigation Of The Effects Of Increased Tidal Inundation, Competition, And Facilitation On Salt Marsh Systems, Jennifer A. Hyder Apr 2015

An Investigation Of The Effects Of Increased Tidal Inundation, Competition, And Facilitation On Salt Marsh Systems, Jennifer A. Hyder

USF Tampa Graduate Theses and Dissertations

The low-lying topographic nature of salt marshes makes plants in these communities particularly vulnerable to increased salinity and inundation exposure associated with sea level rise. Both increased salinity and inundation have been cited as major causes of reduced plant performance and survival in marsh and areas fringing marsh. In addition to limitations imposed by physical stress, interspecific interactions have also been shown to mediate the performance and survival of salt marsh and salt marsh fringing species. The Stress Gradient Hypothesis (SGH) postulates that species interactions shift from competitive to facilitative as stress levels increase and predicts that (a) the frequency …

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Draft Genome Sequence Of The Piezotolerant And Crude Oil-Degrading Bacterium Rhodococcus Qingshengii Strain Tuhh-12, Sara A. Lincoln, Trinity L. Hamilton, Ana Gabriela Valladares Juárez, Martina Schedler, Jennifer L. Macalady, Rudolf Müller, Katherine H. Freeman Apr 2015

Draft Genome Sequence Of The Piezotolerant And Crude Oil-Degrading Bacterium Rhodococcus Qingshengii Strain Tuhh-12, Sara A. Lincoln, Trinity L. Hamilton, Ana Gabriela Valladares Juárez, Martina Schedler, Jennifer L. Macalady, Rudolf Müller, Katherine H. Freeman

C-IMAGE Publications

We report here the draft genome sequence of Rhodococcus qingshengii strain TUHH-12. The ability of this piezotolerant bacterium to grow on crude oil and tetracosane as sole carbon sources at 150 × 10(5) Pa makes it useful in studies of hydrocarbon degradation under simulated deep-sea conditions.

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