Life Sciences Commons^™

Unraveling Frontiers In Poultry Health (Part 1) – Mitigating Economically Important Viral And Bacterial Diseases In Commercial Chicken And Turkey Production, Yowande O. Fasina, David L. Suarez, George D. Ritter, Elise C. Griffen, Yahua Z. Farnell, Ross Wolfenden, Billy M. Hargis

Poultry Science Faculty Publications and Presentations

This symposium offered up-to-date perspectives on field experiences and the latest research on significant viral and bacterial diseases affecting poultry. A highlight was the discussion on the use of enteroids as advanced in vitro models for exploring disease pathogenesis. Outcomes of this symposium included identifying the urgent need to improve the prevention and control of avian influenza by focusing research on vaccine effectiveness. In this regard, efforts should focus on enhancing the relatedness of vaccine antigen to the field (challenge) virus strain and improving immunogenicity. It was also revealed that gangrenous dermatitis could be controlled through withholding or restricting the …

Kenyan Free-Tailed Bats Demonstrate Seasonal Birth Pulse Asynchrony With Implications For Virus Maintenance, Tamika J. Lunn, Reilly T. Jackson, Paul W. Webala, Joseph Ogola, Kristian M. Forbes

Biological Sciences Faculty Publications and Presentations

Ecological information on wildlife reservoirs is fundamental for research targeting prevention of zoonotic infectious disease, yet basic information is lacking for many species in global hotspots of disease emergence. We provide the first estimates of synchronicity, magnitude, and timing of seasonal birthing in Mops condylurus, a putative ebolavirus host, and a co-roosting species, Mops pumilus (formerly Chaerephon pumilus). We show that population-level synchronicity of M. condylurus birthing is wide (~ 8.5 weeks) and even wider in M. pumilus (> 11 weeks). This is predicted to promote the likelihood of filovirus persistence under conditions of bi-annual birthing (two births …

Achieving Wheat Self-Sufficiency In Brazil, Rogerio De S. Noia Junior, Maicon Nardino, Elvis F. Elli, Diego Pequeno, Clyde Fraisse

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Brazil is a leading grain producer and exporter, producing on average 6.6 million tons (Mt) of wheat per year from 2013 to 2023. However, to meet its average annual domestic consumption of 11.1 Mt over the same period, the country continued to rely on imports of 4.5 Mt of wheat each year. This dependency on imports leads to high wheat prices in Brazil compared to the global average.

Quality Characteristic Of Instant Rice Produced Using Microwave-Assisted Hot Air Drying, Anne Adhiambo Okeyo, Kaushik Luthra, Alan R. Vazquez, Griffiths Atungulu

Food Science Faculty Publications and Presentations

Background and Objectives

It is of utmost importance for the instant rice processing sector to reassess its methodologies to enhance the overall quality of instantized rice products. This study aimed to analyze how the combination of microwave (MW) drying and convective heated air drying influences the quality of instantized rice. Novel approaches for drying precooked rice were explored, involving the utilization of an industrial MW operating at a frequency of 915 MHz with treatment conditions set at 4 kW power for 8 min. This was followed by two distinct convective oven drying strategies, each lasting 4 min. Specifically, stepwise convective …

Food Labeling: Ingredient Exemptions And Product Claims, Elena Krasovkaia, Bradley J. Rickard, Brenna Ellison, Brandon R. Mcfadden, Norbert Wilson

Agricultural Economics and Agribusiness Faculty Publications and Presentations

New breeding methods have provided scientists with opportunities to improve traits in a wide range of crops, however, there remains resistance to foods that are produced from these crops, and mandates on labels used to describe such processes continue to be a source of policy debate. Here we focus on gene editing and examine (i) whether consumer acceptance varies when the technology is applied to different ingredients (unrefined versus highly refined ingredients) and (ii) the impact of two different claims related to gene editing (health-focused claim versus an environment-focused claim). Our results show that consumers are less likely to purchase …

Using Data From Uniform Rate Applications For Site-Specific Nitrogen Recommendations, Eunchun Park, B. Wayne Brorson, Xiaofei Li

Agricultural Economics and Agribusiness Faculty Publications and Presentations

Much historical yield-monitor data is from fields where a uniform rate of nitrogen was applied. A new approach is proposed using this data to get site-specific nitrogen recommendations. Bayesian methods are used to estimate a linear plateau model where only the plateau is spatially varying. The model is then illustrated by using it to make site-specific nitrogen recommendations for corn production in Mississippi. The in-sample recommendations generated by this approach return an estimated $9/acre on the example field. The long-term goal is to combine this information with other information such as remote sensing measurements.

Antioxidant, Antibacterial, And Molecular Docking Of Methyl Ferulate And Oleic Acid Produced By Aspergillus Pseudodeflectus Aumc 15761 Utilizing Wheat Bran, Ahmed Mohamed Ahmed Ali Ali Ramadan, Sabry Ahmed Hussein Zidan, Reda Mohamed Shehata, Hussein Hosny El-Sheikh, Fuad Ameen, Steven L. Stephenson, Osama Abdel-Hafeez Mohamed Al-Bedak

Biological Sciences Faculty Publications and Presentations

Secondary metabolites (SMs) are the primary source of therapeutics and lead chemicals in medicine. They have been especially important in the creation of effective cures for conditions such as cancer, malaria, bacterial and fungal infections, neurological and cardiovascular problems, and autoimmune illnesses. In the present study, Aspergillus pseudodeflectus AUMC 15761 was demonstrated to use wheat bran in solid state fermentation (SSF) at optimum conditions (pH 7.0 at 30 °C after 10 days of incubation and using sodium nitrate as a nitrogen source) to produce methyl ferulate and oleic acid with significant antioxidant and antibacterial properties. Gas chromatography-mass spectrometry (GC–MS) analysis …

Can Moderate-Quality Bermudagrass Baleage Be Used To Stretch Wheat Pasture?, P. A. Beck, M. R. Beck, D. Hubbell Iii, T. Hess, A. P. Foote, M. S. Gadberry, Beth Kegley

Animal Science Faculty Publications and Presentations

Objectives

Materials and Methods

Oxyfluorfen-Resistant Rice Tolerance And Weed Control When Using Oxyfluorfen, Casey H. Arnold, Jason K. Norsworthy, Thomas R. Butts, Trenton L. Roberts, Nicholas R. Bateman, Chad W. Shelton

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Herbicide-resistant barnyardgrass and weedy rice control, without crop injury, is a challenge for rice producers in the United States. Herbicides not initially labeled for rice, such as oxyfluorfen, are now being evaluated as new tools for weed control. The ROXY® trait allows for the use of oxyfluorfen in rice for weed control preemergence and postemergence. Experiments were initiated in 2021 and 2022 to evaluate (1) the effectiveness of preemergence- and postemergence-applied oxyfluorfen on barnyardgrass and weedy rice, (2) the sensitivity of oxyfluorfen-resistant rice to oxyfluorfen as a function of application timing, and (3) the influence of soil moisture on oxyfluorfen-resistant …

Clostridium Butyricum And Carbohydrate Active Enzymes Contribute To The Reduced Fat Deposition In Pigs, Lingyan Ma, Shiyu Tao, Tongxing Song, Wentao Lyu, Ying Li, Wen Wang, Qicheng Shen, Yan Ni, Jiang Zhu, Jiangchao Zhao, Hua Yang, Yingping Xiao

Animal Science Faculty Publications and Presentations

Pig gastrointestinal tracts harbor a heterogeneous and dynamic ecosystem populated with trillions of microbes, enhancing the ability of the host to harvest energy from dietary carbohydrates and contributing to host adipogenesis and fatness. However, the microbial community structure and related mechanisms responsible for the differences between the fatty phenotypes and the lean phenotypes of the pigs remained to be comprehensively elucidated. Herein, we first found significant differences in microbial composition and potential functional capacity among different gut locations in Jinhua pigs with distinct fatness phenotypes. Second, we identified that Jinhua pigs with lower fatness exhibited higher levels of short-chain fatty …

A Comprehensive Analysis Of Antibiotic Resistance Genes In The Giant Panda Gut, Feilong Deng, Yanhua Han, Yushan Huang, Desheng Li, Jianmin Chai, Linhua Deng, Ming Wei, Kai Wu, Huabin Zhao, Guan Yang, Jiangchao Zhao, Ying Li, Chengdong Wang

Animal Science Faculty Publications and Presentations

In this study, we have successfully constructed a comprehensive database of metagenome-assembled genomes (MAGs) pertaining to the gut microbiota of the giant panda. Through our analysis, we have identified significant reservoirs of antibiotic resistance genes (ARGs), namely Escherichia coli, Citrobacter portucalensis, and Klebsiella pneumoniae. Furthermore, we have elucidated the primary contributors to ARGs, including Streptococcus alactolyticus and Clostridium SGBP116, in both captive and wild pandas. Additionally, our findings have demonstrated a higher prevalence of ARGs in the metagenome, with notable expression of the RPOB2 gene in S. alactolyticus. Crucially, 1217 ARGs shared homology with human gut …

Decomposition Of Bark Beetle-Attacked Trees After Mortality Varies Across Forests, N. A. Clay, J. D. Tang, C. M. Siegert, J. T. Thomason, N. Benedetto, D. Day, K. Pace, O. Leverón, R. W. Hofstetter, J. J. Riggins

Entomology and Plant Pathology Faculty Publications and Presentations

Bark beetle outbreaks result in massive amounts of deadwood which are a significant carbon reservoir that can impact forest ecosystems. Additionally, bark beetle-introduced symbiotic fungi in beetle-generated deadwood can increase termite presence and feeding. This could alter decomposition rates and saproxylic communities of bark beetle-generated deadwood. However, the fate of bark beetle-generated deadwood after tree mortality has received little attention despite the possibility bark beetles could alter decomposition processes and deadwood residence times at landscape scales following outbreaks. We tested the hypothesis that beetle-attacked trees decompose faster than unattacked trees. In Honduras, and Mississippi and Arizona, USA, we felled one …

The Current State Of Artificial Intelligence Generative Language Models Is More Creative Than Humans On Divergent Thinking Tasks, Kent F. Hubert, Kim N. Awa, Darya L. Zabelina

Psychological Science Faculty Publications and Presentations

The emergence of publicly accessible artificial intelligence (AI) large language models such as ChatGPT has given rise to global conversations on the implications of AI capabilities. Emergent research on AI has challenged the assumption that creative potential is a uniquely human trait thus, there seems to be a disconnect between human perception versus what AI is objectively capable of creating. Here, we aimed to assess the creative potential of humans in comparison to AI. In the present study, human participants (N = 151) and GPT-4 provided responses for the Alternative Uses Task, Consequences Task, and Divergent Associations Task. We found …

Antimicrobial Tolerance In Salmonella: Contributions To Survival And Persistence In Processing Environments, Tomi Obe, Aaron S. Kiess, Ramakrishna Nannapaneni

Poultry Science Faculty Publications and Presentations

Salmonella remains a top bacterial pathogen implicated in several food-borne outbreaks, despite the use of antimicrobials and sanitizers during production and processing. While these chemicals have been effective, Salmonella has shown the ability to survive and persist in poultry processing environments. This can be credited to its microbial ability to adapt and develop/acquire tolerance and/or resistance to different antimicrobial agents including oxidizers, acids (organic and inorganic), phenols, and surfactants. Moreover, there are several factors in processing environments that can limit the efficacy of these antimicrobials, thus allowing survival and persistence. This mini-review examines the antimicrobial activity of common disinfectants/sanitizers used …

Effects Of Environmental Enrichments On Welfare And Hepatic Metabolic Regulation Of Broiler Chickens, Seong W. Kang, Karen D. Christensen, Michael T. Kidd, Sara K. Orlowski

Poultry Science Faculty Publications and Presentations

The aims of this study were to find suitable environmental enrichment (EE) and evaluate the combined effect of two EEs, variable light intensity (VL) lighting program and EH, on mental health and hepatic metabolic regulation in commercial broilers. To find the advantageous EEs for broilers, three different EEs (board, hut, and ramp) were tested in trial 1. EEs were placed and the engagement of birds to EEs, dustbathing behavior, and daily physical activity were observed. Birds treated with huts showed higher engagement than the board- or ramp-treated birds (p < 0.05). The results of dustbathing behavior and daily physical activity indicated that the environmental hut (EH) is the most favorable enrichment for broilers. In the second trial, to test the effect of EHs on mental health and hepatic metabolic conditions, the brain and liver were sampled from the four treatment birds (20 lx_Con, 20 lx_Hut, VL_Con and VL_Hut) on day 42. The lower expression of TPH2 (tryptophan hydroxylase 2) of VL_Hut birds than those of VL_Con and 20 lx_Hut treated birds suggests the combining effect of EHs with the VL lighting program on the central serotonergic homeostasis of broilers. Reduced expressions of TH (tyrosine hydroxylase), GR (glucocorticoid receptor), BDNF (brain-derived neurotrophic factor) of VL_Hut treated birds compared to those of VL_Con and 20 lx_Hut birds suggest lower stress, stress susceptibility, and chronic social stress in VL_Hut treated birds. The expression of CPT1A (carnitine palmitoyl transferase 1) increased over three-fold in the liver of VL_Con birds compared to 20 lx_Con birds (p < 0.05). EHs treatment in VL birds (VL_Hut) significantly decreased CPT1A but not in 20 lx birds (20 lx_Hut). The expression of ACCα (acetyl-CoA carboxylase alpha) was significantly decreased in VL_Con birds compared to 20 lx_Con birds. There was no significant difference in the hepatic FBPase (fructose-1,6-bisphosphatase), GR, and 11β-HSD1 (11 β-hydroxysteroid dehydrogenease-1) expression between 20 lx_Con and VL_Con birds, but EHs significantly stimulated GR in 20 lx_Hut birds, and stimulated FBPase and 11β-HSD1 expression in the VL_Hut birds compared to 20 lx_Con birds, suggesting that the VL lighting program reduced fatty acid synthesis and increased fatty acid β-oxidation in the broilers’ liver and VL_Hut improved the hepatic de novo glucose production. Taken together, the results suggest that the stimulated voluntary activity by EHs in the light-enriched broiler house improved mental health and hepatic metabolic function of broilers and may indicate that the improved hepatic metabolic function contributes to efficient nutritional support for broilers.

Molecular Genomic Analyses Of Enterococcus Cecorum From Sepsis Outbreaks In Broilers, Douglas D. Rhoads, Jeff Pummill, Adnan Ali Khalaf Alrubaye

Poultry Science Faculty Publications and Presentations

Extensive genomic analyses of Enterococcus cecorum isolates from sepsis outbreaks in broilers suggest a polyphyletic origin, likely arising from core genome mutations rather than gene acquisition. This species is a normal intestinal flora of avian species with particular isolates associated with osteomyelitis. More recently, this species has been associated with sepsis outbreaks affecting broilers during the first 3 weeks post-hatch. Understanding the genetic and management basis of this new phenotype is critical for developing strategies to mitigate this emerging problem. Phylogenomic analyses of 227 genomes suggest that sepsis isolates are polyphyletic and closely related to both commensal and osteomyelitis isolate …

Accelerating Neurotechnology Development Using An Agile Methodology, Anil Kumar Thota, Ranu Jung

Biomedical Engineering Faculty Publications and Presentations

Novel bioelectronic medical devices that target neural control of visceral organs (e.g., liver, gut, spleen) or inflammatory reflex pathways are innovative class III medical devices like implantable cardiac pacemakers that are lifesaving and life-sustaining medical devices. Bringing innovative neurotechnologies early into the market and the hands of treatment providers would benefit a large population of patients inflicted with autonomic and chronic immune disorders. Medical device manufacturers and software developers widely use the Waterfall methodology to implement design controls through verification and validation. In the Waterfall methodology, after identifying user needs, a functional unit is fabricated following the verification loop (design, …

Investigating The Malting Suitability And Brewing Quality Of Different Rice Cultivars, Bernardo P. Guimaraes, Florian Schrickel, Nils Rettberg, Shannon R. M. Pinson, Anna M. Mcclung, Kaushik Luthra, Griffiths G. Atungulu, Xueyan Sha, Christian De Guzman, Scott Lafontaine

Food Science Faculty Publications and Presentations

Nineteen globally diverse rice cultivars were analyzed for various chemical parameters important to malting, including germination energy, protein, apparent amylose content, and gelatinization temperatures (GT). The rice cultivars were then malted, and congress mashes were produced. Several parameters important to brewing were then assessed in the malts and worts (i.e., extract, soluble protein, free amino nitrogen (FAN), GT, etc.). The rice malts produced were saccharified to varying degrees, had high limit dextrinase activities, and contained sufficient FAN/protein concentrations. This suggests their potential to yield robust fermentations in beer styles with high adjunct inclusions without requiring additional nitrogen supplementation. Rice cultivars …

Effect Of A Novel Drying Method Based On Supercritical Carbon Dioxide On The Physicochemical Properties Of Sorghum Proteins, Nafisa Sadaf, Arda Tuhanioglu, Navam Hettiarachchy, Ali Ubeyito

Food Science Faculty Publications and Presentations

The aim of this research was to use supercritical carbon dioxide (SC-CO₂) drying as a novel approach for generating sorghum protein concentrates/isolates with enhanced functional properties. Sorghum protein extracts were obtained from white whole-grain sorghum flour and were dried by two methods, namely, freeze-drying and SC-CO₂ drying. The collected proteins were characterized for their morphology, color, crystallinity, surface hydrophobicity, emulsifying activity index (EAI), creaming index (CI), foaming capacity (FC), foaming stability (FS), protein solubility, chemical interactions, and viscosity. The SC-CO₂-dried proteins exhibited higher porosity compared to the freeze-dried ones with smaller particle sizes (∼5.1 vs. …

Us Public Opinion About The Safety Of Gene Editing In The Agriculture And Medical Fields And The Amount Of Evidence Needed To Improve Opinions, Brandon R. Mcfadden, Joy N. Rumble, Kathryn A. Stofer, Kevin M. Folta

Agricultural Economics and Agribusiness Faculty Publications and Presentations

Introduction: Implementation of gene editing in agriculture and medicine hinges on public acceptance. The objectives of this study were to explore U.S. public opinion about gene editing in agricultural and medical fields and to provide more insight into the relationship between opinions about the safety of gene editing and the potential impact of evidence to improve opinions about safety.

Methods: Data were from two samples of U.S. respondents: 1,442 respondents in 2021 and 3,125 respondents in 2022. Survey respondents provided their opinions about the safety of gene editing in the agricultural and medical fields and answered questions about the number …

Research Note: Evaluation Of Phytic Acid Disappearance, Ileal P Digestibility, And Total Tract P Retention In Canola Meal Supplemented With Increasing Levels Of Exogenous Phytase Using Conventional And Cecectomized Precision-Fed Roosters And Growing Chicks, Benjamin Parsons, Samuel Rochell

Poultry Science Faculty Publications and Presentations

Apparent ileal digestibility (AID) of P, apparent total tract retention (ATTR) of P, and phytic acid disappearance in canola meal were evaluated in the presence of increasing levels of exogenous phytase. In Experiment 1, a precision-fed rooster assay was used to determine phytic acid (myo-inositol 1,2,3,4,5,6-hexakis; InsP₆) and inositol phosphate (InsP_6-3; InsP-P) disappearance in conventional and cecectomized Leghorn roosters. Roosters were crop intubated with 25 g of canola meal mixed with 0, 500, 1,000, or 2,000 FTU/kg of exogenous phytase. In Experiment 2, InsP₆ and InsP-P disappearance and AID …

An Evaluation Of Bacterial Wilt (Ralstonia Solanacearum) Resistance In A Set Of Tomato Germplasm From The United States Department Of Agriculture, Theresa M. Phiri, Gehendra Bhattarai, Kenani Edward Chiwina, Qiurong Fan, Haizheng Xiong, Ibtisam Alatawi, Ryan Dickson, Neelendra K. Joshi, Alejandro Rojas, Kai-Shu Ling, Ainong Shi

Horticulture Faculty Publications and Presentations

Bacterial wilt (BW), caused by Ralstonia solanacearum, is one of the devastating diseases in tomatoes (Solanum lycopersicum L.). The use of resistant cultivars and breeding for genetic resistance is the most effective, economical, and environmentally friendly management strategy for this disease. It is necessary to screen diverse germplasm and cultivated genotypes to identify resistant resources and to develop resistant cultivars in tomatoes to combat the changing pathogen isolates. This study evaluated 40 United States Department of Agriculture (USDA) tomato accessions for their BW resistance to the R. solanacearum isolate P822 under greenhouse conditions. The tomato plants were inoculated …

Evaluation Of Drought Tolerance In Usda Tomato Germplasm At Seedling Stage, Kenani E. Chiwina, Gehendra Bhattarai, Haizheng Xiong, Neelendra K. Joshi, Ryan W. Dickson, Theresa M. Phiri, Ibtisam Alatawi, Yilin Chen, Zachary Stansell, Kai-Shu Ling, Ainong Shi

Horticulture Faculty Publications and Presentations

Drought, a crucial abiotic stressor, markedly reduces the growth and yield of tomato crops (Solanum lycopersicum L.). Consequently, adopting drought-resistant cultivars and implementing breeding programs to enhance drought tolerance have emerged as enduring solutions to alleviate the adverse effects of drought in various tomato cultivation regions. In this study, 68 United States Department of Agriculture (USDA) tomato accessions were assessed in a controlled greenhouse experiment, encompassing both water deficit treatment and a control group subjected to standard watering conditions. The experiment was arranged in a randomized complete block design with three replications. The results of this study pinpointed four …

Frequent And Intense Human-Bat Interactions Occur In Buildings Of Rural Kenya, Reilly T. Jackson, Tamika J. Lunn, Isabell Deangelis, Joseph G. Ogolo, Paul W. Webala, Kristian M. Forbes

Biological Sciences Faculty Publications and Presentations

Abstract

Simultaneous use of domestic spaces by humans and wildlife is little understood, despite global ubiquity, and can create an interface for human exposure to wildlife pathogens. Bats are a pervasive synanthropic taxon and are associated with several pathogens that can spill over and cause disease in humans. Urbanization has destroyed much natural bat habitat and, in response, many species increasingly use buildings as roosts. The purpose of this study was to characterize human interactions with bats in shared buildings to assess potential for human exposure to and spillover of bat-borne pathogens. We surveyed 102 people living and working in …

Identification Of Differentially Recognized T Cell Epitopes In The Spectrum Of Tuberculosis Infection, Sudhasini Panda, Jeffrey Morgan, Catherine Cheng, Mayuko Saito, Robert H. Gilman, Nelly Ciobanu, Valeriu Crudu, Donald G. Cantazaro, Antonino Cantazaro, Timothy Rodwell, Judy S.B. Perera, Teshan Chathuranga, Bandu Gunasena, Aruna D. Desilva, Bjoern Peters, Alessandro Sette, Cecilia S. Linderstam Arlehamn

Biological Sciences Faculty Publications and Presentations

There is still incomplete knowledge of which Mycobacterium tuberculosis (Mtb) antigens can trigger distinct T cell responses at different stages of infection. Here, a proteome-wide screen of 20,610 Mtb-derived peptides in 21 patients mid-treatment for active tuberculosis (ATB) reveals IFNγ-specific T cell responses against 137 unique epitopes. Of these, 16% are recognized by two or more participants and predominantly derived from cell wall and cell processes antigens. There is differential recognition of antigens, including TB vaccine candidate antigens, between ATB participants and interferon-gamma release assay (IGRA + /−) individuals. We developed an ATB-specific peptide pool (ATB116) consisting of epitopes exclusively …

Leverage Of Salvadora Persica And Pulicaria Undulata Extracts In Escherichia Coli-Challenged Broiler Chickens, Mohamed A. Lebda, Ahd. A. Mansour, Esraa M. Elieba, Shahira A. Hassoubah, Fatemah Almalki, Mohamed Abu El-Magd, Sara I. Othman, Ahmed M. Allam, Guillermo Tellez-Isaias, Ayman E. Taha

Poultry Science Faculty Publications and Presentations

Escherichia coli (E. coli) is a significant challenge in the poultry industry due to their related use of antimicrobial compounds and the drastic losses in production and livability. This study investigated the preventive impacts of dietary supplementation of Salvadora persica (SP) and/or Pulicaria undulata (PU) extracts on growth traits, biochemical and immune parameters, and related gene expression of E. coli-infected broilers. A total of 120 one-day-old Cobb broilers were used. The chicks were allocated into eight equal groups (3 replicates/ group; 5 chicks per each replicate) as follows: G1; control negative, G2; SP-treated, G3; …

Genome-Wide Exploration And Analysis Of Plant Stress-Responsive Camta Transcription Factor Genes In Brachypodium Distachyon And Their Expression Patterns Under Environmental Challenges, M. Aydin Akbudaki, Durmus Cetin, Ertugrul Filiz, Vibha Srivastava

Cell and Molecular Biology Faculty Publications and Presentations

Calmodulin-binding transcription activators (CAMTAs) is a family of transcriptional factors, which are highly sensitive to various stressors and hormone signals. They are involved in regulating plant growth, development, stress response, and have distinct biological roles in different plant compartments. Although the gene families coding the CAMTA transcription factors have been identified and functionally characterized in many plant species, it has not been previously reported in Brachypodium distachyon, which is a model organism for genomic research in cereals and grasses. In the present study, seven novel CAMTA genes were identified in the B. distachyon genome, all of which …

Metagenomics Reveals The Temporal Dynamics Of The Rumen Resistome And Microbiome In Goat Kids, Jianmin Chai, Yimin Zhuang, Kai Cui, Yanglin Zhu, Yangliang Bi, Naifeng Zhang

Animal Science Faculty Publications and Presentations

Background

The gut microbiome of domestic animals carries antibiotic resistance genes (ARGs) which can be transmitted to the environment and humans, resulting in challenges of antibiotic resistance. Although it has been reported that the rumen microbiome of ruminants may be a reservoir of ARGs, the factors affecting the temporal dynamics of the rumen resistome are still unclear. Here, we collected rumen content samples of goats at 1, 7, 14, 28, 42, 56, 70, and 84 days of age, analyzed their microbiome and resistome profiles using metagenomics, and assessed the temporal dynamics of the rumen resistome in goats at the early …

Reconstructing The Last 71 Ka Paleoclimate In Northeast China By Integrating Typical Loess Sections, Juan Li, Kristofor R. Brye, Zhong-Xiu Sun, Phillip R. Owens, Zhuo-Dong Jiang, Tian-Hao Wang, Meng-Ge Zhang, Qiu-Bing Wang

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Long-term continuous deposits and well-preserved thick loess sections are natural archives for the reconstruction of global climate change. However, the loess sections are often discontinuous owing to soil erosions and accumulations. This study aimed at reconstructing long-term continuous paleoclimatic records by integrating the target sections of two typical loess sequences in northeast (NE) China. One section, the Dajiugang (DJG) section, was investigated and sampled, and the Sanbahuo (SBH) section was used as the target for integrating and reconstructing the paleoclimate. Sedimentary, pedogenesis, and luminescence dating analyses were conducted to analyze the potentials for reconstructing the paleoclimate by integrating two typical …

Turtle Species And Ecology Drive Carapace Microbiome Diversity In Three Seasonally Interconnected Wetland Habitats, Matthew Parks, Jun Sheng Lee, Kassandra Camua, Ethan Hollender

Biological Sciences Faculty Publications and Presentations

Different species of freshwater turtles exhibit primary behaviours ranging from aerial basking to benthic bottom-walking, cycle between wet and dry conditions at different time intervals, and undertake short-distance overland movements between aquatic habitats. These behaviours in turn may impact the accumulation of microbes on external shell surfaces of turtles and provide novel niches for differentiation of microbial communities. We assessed microbial diversity using 16S and 18S rRNA metabarcoding on carapace surfaces of six species of freshwater turtles residing in three adjacent and seasonally interconnected wetland habitats in southeast Oklahoma (United States). Communities were highly diverse, with nearly 4200 prokaryotic and …