Life Sciences Commons^™

Time-Activity Budgets Of Stoplight Parrotfish (Scaridae: Sparisoma Viride) In Belize: Cleaning Invitation And Diurnal Patterns, Wesley A. Dent, Gary R. Gaston

Gulf and Caribbean Research

The primary objective of this study was to analyze diurnal behavior of Sparisoma viride in South Water Caye Marine Reserve (SWCMR), Belize. Time-activity budgets were used to characterize behavior (using swimming, feeding, hovering, sheltering, defecating, and cleaning categories) during the diel cycle, and to illustrate differences among the life phases of this species.

Distribution And Length Frequency Of Invasive Lionfish (Pterois Sp.) In The Northern Gulf Of Mexico, Alexander Q. Fogg, Eric R. Hoffmayer, William B. Driggers Iii, Matthew D. Campbell, Gilmore J. Pellegrin, William Stein

Gulf and Caribbean Research

The purpose of this communication is to document continued spatial expansion of lionfish farther west into the northern Gulf of Mexico. Furthermore, we provide the first length— mass relationships and length frequency information for lionfishes captured within the northern GOM based on data collected as part of a broader on—going study of lionfish life history in this region.

Effects Of Black Mangrove (Avicennia Germinans) Expansion On Saltmarsh (Spartina Alterniflora) Benthic Communities Of The South Texas Coast, Jessica Lunt, Kimberly Mcglaun, Elizabeth M. Robinson

Gulf and Caribbean Research

This study examined the effects of mangrove expansion on benthic communities. This was accomplished by examining plant composition, benthic community composition, and belowground root biomass. Two sites were examined: Corpus Christi Pass, Corpus Christi, TX where mangroves have become more common in the last decade and the Lower Laguna Madre, South Padre Island, TX where mangroves are well established. This research seeks to provide preliminary results to provide direction for future studies examining the interplay of S. alterniflora and A. germinans habitat on benthic communities. We hypothesize that the more established site of South Padre Island will have greater numbers …

What Is Known About Species Richness And Distribution On The Outer-Shelf South Texas Banks?, Harriet L. Nash, Sharon J. Furiness, John W. Tunnell Jr.

Gulf and Caribbean Research

The outer-shelf South Texas Banks, also known as the snapper banks, are known by fishermen to be excellent fishing grounds. However, few scientific studies have been conducted to describe the ecology of these uncommon but distinctive habitats. This paper describes results of a literature review and an assessment to determine what is known about the biota of the South Texas Banks and to assist in developing renewed interest and focus on these topographic highs. The outer-shelf South Texas Banks include relict coralgal reefs and relict barrier islands, and we also include data for a nearshore site, which is geographically and …

Assessment Of Seagrass Floral Community Structure From Two Caribbean Marine Protected Areas, Paul A.X. Bologna, Anthony J. Suleski

Gulf and Caribbean Research

Seagrass communities represent spatially complex and biomass producing systems comprised of intermixed seagrass and algal species. We investigated shallow water communities from two Marine Protected Areas (MPAs) in the Caribbean: St. John, United States Virgin Islands and Cayos Cochinos, Honduras. St. John sites (4) lie within the Virgin Islands National Park and the Coral Reef National Monument and are designated within an UNESCO Biosphere Reserve. Honduran sites (4) lie within the designated Marine National Monument. Our results indicate that both MPAs were dominated by Thalassia testudinum with spatial coverage and shoot density significantly greater in Honduras. Many sites also showed …

Depuration Of Macondo (Mc-252) Oil Found In Heterotrophic Scleractinian Corals (Tubastrea Coccinea And Tubastrea Micranthus) On Offshore Oil/Gas Platforms In The Gulf, Steve R. Kolian, Scott Porter, Paul W. Sammarco, Edwin W. Cake Jr.

Gulf and Caribbean Research

The impetus for this study began on 8 May 2011, when we noted sporadic mortality of colonies of orange—cup corals, Tubastrea coccinea (Lesson, 1829), and green sun corals, Tubastrea micranthus (Ehrenberg, 1834; Cnidaria, Anthozoa, Scleractinia) among colonies of coral that appeared to be in good health at the GI 90 block platforms. Colonies of T. coccinea which appeared to be healthy displayed markedly less tissue regression and were bright orange in color. The morbid polyps were dark brown or black. The corals were collected, transported to the laboratory, and segregated; healthy—appearing corals were placed in quarantine tanks. After 12 h …

Occurrence Of An Intersexual Blacktip Shark In The Northern Gulf Of Mexico, With Notes On The Standardization Of Classifications For This Condition In Elasmobranchs, Jill M. Hendon, David M. Koester, Eric R. Hoffmayer, William B. Driggers Iii, Angela M. Cicia

Faculty Publications

An intersexual Blacktip Shark Carcharhinus limbatus with a testis, immature female reproductive tracts (embedded), and claspers was caught in the Gulf of Mexico. Histology of the single gonad revealed that all stages of spermatogenesis were occurring; however, the absence of ovaries and a male duct system suggests that neither sex would have been functional in this individual. Intersexuality has been reported in 17 families and 36 species of elasmobranchs. The degree to which the different sexes are present in a given individual is often difficult to categorize by normal hermaphroditic standards, as this is typically an anomalous presentation in elasmobranchs. …

Spatial And Size Distribution Of Red Drum Caught And Released In Tampa Bay, Florida, And Factors Associated With Post-Release Hooking Mortality, Kerry E. Flaherty, Brent L. Winner, Julie L. Vecchio, Theodore S. Switzer

Gulf and Caribbean Research

The recreational fishery for red drum (Sciaenops ocellatus) in Florida is unusual in that most red drum targeted are immature and caught within estuarine waters. Current state regulations rely exclusively on bag and size limits, resulting in the release of a large proportion of captured individuals. This study employed hook-and-line sampling conducted monthly in Tampa Bay, Florida and catch-and-release mortality experiments to determine the spatial and size distribution of red drum and the mortality rate of released fish, respectively. Of the 1,405 red drum collected, more than 70% were smaller than the minimum legal size (457 mm standard …

Effects Of Closure Of The Mississippi River Gulf Outlet On Saltwater Intrusion And Bottom Water Hypoxia In Lake Pontchartrain, Michael A. Poirrier

Gulf and Caribbean Research

The goal of this study was to determine if Mississippi River Gulf Outlet closure by hurricane flood protection projects stopped saltwater intrusion, salinity stratification, and associated low bottom water dissolved oxygen in Lake Pontchartrain.

First Record Of A Nurse Shark, Ginglymostoma Cirratum, Within The Mississippi Sound, Jill M. Hendon, Eric R. Hoffmayer, William B. Driggers Iii

Gulf and Caribbean Research

Of all the coastal shark species in the northern Gulf of Mexico, the nurse shark, Ginglymostoma cirratum, is one of the few species not documented in the Sound. Unlike most coastal sharks, nurse shark distribution is confined to a relatively specific suite of abiotic characteristics. Hannan et al. (2012) demonstrated that the distribution of nurse sharks in the northern GOM is primarily limited to hard bottom habitats with relatively high temperature, salinity, dissolved oxygen, and water clarity. Herein, we provide support for the findings of Hannan et al. (2012) and report the first documented occurrence of a nurse shark …

The Impact Of Coastal Phytoplankton Blooms On Ocean-Atmosphere Thermal Energy Exchange: Evidence From A Two-Way Coupled Numerical Modeling System, Jason K. Jolliff, Travis A. Smith, Charlie N. Barron, Sergio Derada, Stephanie C. Anderson, Richard W. Gould, Robert A. Arnone

Faculty Publications

A set of sensitivity experiments are performed with a two-way coupled and nested ocean-atmosphere forecasting system in order to deconvolve how dense phytoplankton stocks in a coastal embayment may impact thermal energy exchange processes. Monterey Bay simulations parameterizing solar shortwave transparency in the surface ocean as an invariant oligotrophic oceanic water type estimate consistently colder sea surface temperature (SST) than simulations utilizing more realistic, spatially varying shortwave attenuation terms based on satellite estimates of surface algal pigment concentration. These SST differences lead to an similar to 88% increase in the cumulative turbulent thermal energy transfer from the ocean to the …

Assimilating Altimetric Data Into A South China Sea Model, Chau-Ron Wu, Ping-Tung Shaw, Shenn-Yu Chao

Faculty Publications

Sea surface heights from the TOPEX/Poseidon altimeter are assimilated into a three-dimensional primitive equation model to derive the circulation in the South China Sea. With data assimilation the model resolves not only the basinwide circulation but also a dipole off Vietnam and a low/high feature near the Luzon Strait. Mesoscale features are missing in the simulation without data assimilation because of poor resolution in the wind field and inadequate knowledge of the transport through the Luzon Strait. Compared to the case without data assimilation, data assimilation reduces the root mean square error between the simulated and observed sea surface heights …

Marine Fungi Of U.S. Gulf Of Mexico Barrier Island Beaches: Biodiversity And Sampling Strategy, Allison Kathleen Walker

Dissertations

Marine fungi are an important but often overlooked component of marine ecosystems. Primarily saprotrophic, they are vital to coastal nutrient cycling processes and food webs. However, basic marine fungal distribution data are lacking in many parts of the world, as is knowledge of the sampling intensity required to characterize the biodiversity of these communities. The roles of substrate, season and latitude in shaping intertidal ascomycete community structure were examined for the U.S. Gulf of Mexico, and the role of sampling frequency on species richness estimates was also addressed. Best sampling practices were developed and 750 collections of beach detritus, sand …

Management Of Biological And Chemical Constituents For The Advancement Of Intensive, Minimal-Exchange, Biofloc-Based Shrimp (Litopenaeus Vannamei) Aquaculture, Andrew James Ray

Dissertations

Intensive, minimal-exchange, biofloc-based shrimp aquaculture systems may provide a sustainable alternative to traditional shrimp culture. Through a series of experiments, this document explores the effects of several key management strategies on water quality, isotopic distribution, and shrimp production.

An experiment evaluated the effects of managing suspended solids (biofloc) concentration at two levels. It was found that using a higher flow rate to larger settling chambers resulted in significantly lower biofloc and nitrate concentrations, and significantly improved shrimp growth rate. A second experiment compared systems with clear water and systems with biofloc. The filters in the clear water systems prevented biofloc …

Identifying And Characterizing Non-Coding Rnas In The Dinoflagellate Karenia Brevis, Helen Namataka

Master's Theses

When algal cells proliferate and accumulate in marine and fresh water systems, they form algal blo'oms. The majority of these blooms are beneficial, but a significant number are detrimental and are known as harmful algal blooms (HABs). A number of negative effects, including closing of recreational beaches and economic loss, are observed during HABs. Predictably, the longer a bloom persists, the greater its effects on human, environmental and economic health. Karenia brevis, a mixotrophic dinoflagellate, forms HABs, and blooms caused by this organism have been known to remain several months after formation. For these reasons, research has been conducted to …

Fungal Biofilm Colonization And Succession On Artificial Reefs In The North-Central Gulf Of Mexico, Amy Leigh Salamone

Master's Theses

This study represents the first characterization of natural mixed-species fungal biofilm communities on artificial reefs in the marine environment. Previous fungal biofilm studies have failed to observe the naturally-occurring biodiversity in coastal areas, which comprise the most utilized zone of the marine environment. Artificial reefs can increase fishing yields, amplify oyster habitats, contribute to shoreline stabilization, promote good water quality, and deter pollution. Proper management practices of artificial reefs require knowledge of the colonization of these new habitats by marine organisms and their subsequent succession. Fungi, along with bacteria, archaea, protists, algae, and diatoms, quickly form a complex biofilm on …

A Time Series Analysis Method Using Hidden Variables For Gene Network Reconstruction, Xi Wu

Dissertations

The DNA microarray technology can be applied to obtain time series data which contains thousands of genes and tens of time points. When confront the great amount of data points a fast and effective method must be constructed to extract useful information. The assumption that the interactions between genes are static in the time series data is made. After made the assumption how to reconstruct those interactions becomes a difficulty problem. Since the underlying interactions between genes are complicated, which involve transcription, translation and protein-protein interaction, to construct a model from physicochemistry is almost impossible/effortless. The popular methods constructed from …

Fluorescence And Size Characterization Of Dissolved Organic Matter In Riverine And Sea Waters In The Northern Gulf Of Mexico, Zhengzhen Zhou

Dissertations

Riverine export of dissolved organic matter (DOM) is an important component in marine carbon budget but the composition and phase partitioning are poorly quantified. Monthly water samples were collected from the lower Mississippi and Pearl rivers between January 2009 to August 2011 for DOM characterization using the fluorescence excitation emission matrix (FluoEEM) technique, coupled with parallel factor analysis (PARAFAC), and flow field-flow fractionation technique. DOM in the Pearl River showed higher dissolved organic carbon (DOC) concentration, temporal fluctuation, and aromaticity, reflecting instantaneous inputs of DOM from local soil and plant litter. In contrast, DOM in the Mississippi River exhibited lower …

The Role Of The Cysteine/Glutathione Regulatory Genes Cdo1, Gsh1, And Gsh2 In Yeast-Mold Dimorphism Of The Pathogenic Fungus Histoplasma Capsulatum, Melissa Anne Adams

Dissertations

The dimorphism of Histoplasma capsulatum (Hc) from a mold to yeast is regulated by many environmental factors such as temperature and thiol concentrations. Histoplasma exists in the soil (or in vitro at 25ºC) as a multicellular saprophytic mold. In the lungs of an infected host (or in vitro at 37ºC), a shift to the unicellular parasitic yeast occurs. Sulfhydryl groups (-SH), especially cysteine, are necessary in the culture medium for the mold to yeast transition. Cysteine is the precursor for the synthesis of glutathione. Enzymes involved in the cysteine metabolism pathway are being studied in order to evaluate …

Several Steps/Day Indicators Predict Changes In Anthropometric Outcomes: Hub City Steps, Jessica L. Thompson, Alicia S. Landry, Jamie M. Zoellner, Catrine Tudor-Locke, Michael Webster, Carol L. Connell, Kathy Yadrick

Faculty Publications

Background: Walking for exercise remains the most frequently reported leisure-time activity, likely because it is simple, inexpensive, and easily incorporated into most people's lifestyle. Pedometers are simple, convenient, and economical tools that can be used to quantify step-determined physical activity. Few studies have attempted to define the direct relationship between dynamic changes in pedometer-determined steps/day and changes in anthropometric and clinical outcomes. Hence, the objective of this secondary analysis was to evaluate the utility of several descriptive indicators of pedometer-determined steps/day for predicting changes in anthropometric and clinical outcomes using data from a community-based walking intervention, HUB City Steps, conducted …

Visual And Electronic Evaluations Of Detached Strawberry Leaves Inoculated With Colletotrichum Species, M. A. Miller-Butler, K. J. Curry, B. R. Kreiser, B. J. Smith

Faculty Publications

Inoculation of detached strawberry leaves with Colletotrichum species may provide an accurate, rapid, non-destructive method of identifying anthracnose resistant germplasm. Two assessments of anthracnose disease severity were compared on detached strawberry leaves inoculated with Colletotrichum fragariae and C. gloeosporioides: a quantitative assessment made via computer-based image analysis and a visual assessment made by two independent raters. The image analysis provided a precise measurement of percent lesion area of infected leaves. There was a strong positive correlation between percent lesion area and the visual disease scores of the raters.

Nutrient Depletion As A Proxy For Microbial Growth In Deepwater Horizon Subsurface Oil/Gas Plumes, Alan M. Shiller, Dongjoo Joung

Faculty Publications

The Deepwater Horizon accident resulted in a substantial uncontrolled hydrocarbon release to the northern Gulf of Mexico, much of which was entrained in deep submerged plumes. While bio-degradation of the hydrocarbons has been inferred from microbial biomass and genetics, the amount of conversion of oil and gas carbon to biomass remains uncertain having only been estimated in modeling studies. Here we examine correlated depletions of nitrate, phosphate and oxygen in the submerged plumes and conclude that a substantial portion of hydrocarbons in these plumes was converted to biomass (0.8-2 x 10(10) mol C). This contrasts with nutrient-limited surface waters where …

Transient Inhibition Of Cell Proliferation Does Not Compromise Self-Renewal Of Mouse Embryonic Stem Cells, Ruoxing Wang, Yan-Lin Guo

Faculty Publications

Embryonic stem cells (ESCs) have unlimited capacity for self-renewal and can differentiate into various cell types when induced. They also have an unusual cell cycle control mechanism driven by constitutively active cyclin dependent kinases (Cdks). In mouse ESCs (mESCs). It is proposed that the rapid cell proliferation could be a necessary part of mechanisms that maintain mESC self-renewal and pluripotency, but this hypothesis is not in line with the finding in human ESCs (hESCs) that the length of the cell cycle is similar to differentiated cells. Therefore, whether rapid cell proliferation is essential for the maintenance of mESC state remains …

Ecology Of Vibrio Parahaemolyticus And Vibrio Vulnificus In The Coastal And Estuarine Waters Of Louisiana, Maryland, Mississippi, And Washington (United States), Crystal N. Johnson, John C. Bowers, Kimberly J. Griffitt, Vanessa Molina, Rachel W. Clostio, Shaofeng Pei, Edward Laws, Rohinee N. Paranjpye, Mark S. Strom, Arlene Chen, Nur A. Hasan, Anwar Huq, Nicholas F. Noriea Iii, D. Jay Grimes, Rita R. Colwell

Faculty Publications

Vibrio parahaemolyticus and Vibrio vulnificus, which are native to estuaries globally, are agents of seafood-borne or wound infections, both potentially fatal. Like all vibrios autochthonous to coastal regions, their abundance varies with changes in environmental parameters. Sea surface temperature (SST), sea surface height (SSH), and chlorophyll have been shown to be predictors of zooplankton and thus factors linked to vibrio populations. The contribution of salinity, conductivity, turbidity, and dissolved organic carbon to the incidence and distribution of Vibrio spp. has also been reported. Here, a multicoastal, 21-month study was conducted to determine relationships between environmental parameters and V. parahaemolyticus …

Modeling Photosynthesis Of Spartina Alterniflora (Smooth Cordgrass) Impacted By The Deepwater Horizon Oil Spill Using Bayesian Inference, Wei Wu, Patrick D. Biber, Mark S. Peterson, Chongfeng Gong

Faculty Publications

To study the impact of the Deepwater Horizon oil spill on photosynthesis of coastal salt marsh plants in Mississippi, we developed a hierarchical Bayesian (HB) model based on field measurements collected from July 2010 to November 2011. We sampled three locations in Davis Bayou, Mississippi (30.375 degrees N, 88.790 degrees W) representative of a range of oil spill impacts. Measured photosynthesis was negative (respiration only) at the heavily oiled location in July 2010 only, and rates started to increase by August 2010. Photosynthesis at the medium oiling location was lower than at the control location in July 2010 and it …

A New Us Polar Research Vessel For The Twenty-First Century, Robert B. Dunbar, Jon Alberts, Carin Ashjian, Vernon Asper, Dale Chayes, Eugene Domack, Hugh Ducklow, Bruce Huber, Lawrence Lawver, Daniel Oliver, Doug Russell, Craig R. Smith, Maria Vernet

Faculty Publications

Scientific and political interests at the poles are significant and rapidly increasing, driven in part by the effects of climate change and emerging geopolitical realities. The polar regions provide important services to global ecosystems and humankind, ranging from food and energy to freshwater and biodiversity. Yet the poles are experiencing changes at rates that far outpace the rest of the planet. Coastal Arctic communities are impacted by climate change through coastal erosion, sea level rise, ice loss, and altered marine food webs, threatening the future of their subsistence lifestyle. Climate change has dramatically increased the melt rate of ice sheets …

A Novel Allosteric Inhibitor Of Macrophage Migration Inhibitory Factor (Mif), Fengwei Bai, Oluwatoyin A. Asojo, Pier Cirillo, Mihai Ciustea, Michel Ledzidet, Paul A. Aristoff, Lin Leng, Raymond A. Koski, Thomas J. Powell, Richard Bucala, Karen G. Anthony

Faculty Publications

Macrophage migration inhibitory factor (MIF) is a catalytic cytokine and an upstream mediator of the inflammatory pathway. MIF has broad regulatory properties, dysregulation of which has been implicated in the pathology of multiple immunological diseases. Inhibition of MIF activity with small molecules has proven beneficial in a number of disease models. Known small molecule MIF inhibitors typically bind in the tautomerase site of the MIF trimer, often covalently modifying the catalytic proline. Allosteric MIF inhibitors, particularly those that associate with the protein by noncovalent interactions, could reveal novel ways to block MIF activity for therapeutic benefit and serve as chemical …

Il-22 Signaling Contributes To West Nile Encephalitis Pathogenesis, Fengwei Bai, Penghua Wang, Lauren A. Zenewicz, Jianfeng Dai, David Gate, Gong Cheng, Long Yang, Feng Qian, Xiaoling Yuan, Ruth R. Montgomery, Richard A. Flavell, Terrence Town, Erol Fikrig

Faculty Publications

The Th17 cytokine, IL-22, regulates host immune responses to extracellular pathogens. Whether IL-22 plays a role in viral infection, however, is poorly understood. We report here that Il22^-/- mice were more resistant to lethal West Nile virus (WNV) encephalitis, but had similar viral loads in the periphery compared to wild type (WT) mice. Viral loads, leukocyte infiltrates, proinflammatory cytokines and apoptotic cells in the central nervous system (CNS) of Il22^-/- mice were also strikingly reduced. Further examination showed that Cxcr2, a chemokine receptor that plays a non-redundant role in mediating neutrophil migration, was significantly reduced in Il22^{-/- …}

Effects Of Hurricane Disturbance On The Stopover Ecology Of Intercontinental Landbird Migrants In Coastal Louisiana, Emily Johanna Lain

Master's Theses

Few studies have considered the impact of weather events on migratory birds during stopover, and essentially none on how hurricanes affect their stopover biology during spring passage. About two thirds of eastern North American forest breeding bird species migrate twice annually between temperate breeding areas and subtropical and tropical wintering grounds, and movement in relation to the Gulf of Mexico (GOM) is a conspicuous and important part of that migration system. During inclement weather or winds inconsistent with travel direction, migratory birds oft.en/a/lout and concentrate by the thousands in forest patches that occur along the northern coast of the GOM. …

Evaluating Macrobenthic Indicators Of Organic Enrichment And Hypoxia Within The Coastal Mississippi Hypoxic Zone, Daneen P. Menke

Master's Theses

Macrobenthic communities offer effective indicators of biotic integrity, but their use for distinguishing anthropogenic from natural stress is tricky because coastal taxa are eurytolerant. Effective coastal management calls for benthic indicators that respond to specific stressors, apply across different habitats, and reflect ecosystem function. Macrobenthic process metrics based on body-size descriptors should reflect ecosystem function and be useful for assessing the effects of eutrophication. Functional trait analysis should reflect the functional diversity of the community. Coastal Mississippi experienced widespread and sustained hypoxia throughout summer 2008. Site 6 located on the 10-m isobath in the center of the 2008 hypoxic zone …