A Deeper Understanding Of Noise Effects On Cetaceans, Jason N. Bruck

Faculty Publications

Recent research with cetaceans under human care is illuminating just how dolphins are affected by human-made noise both in terms of their ability to cooperate as well as their ability to habituate to such noise. This research is providing granular detail to regulators assessing the problems associated with anthropogenic effects and is highlighting a role for behavior/cognition research in conservation.

A Quieter Ocean: Experimentally Derived Differences In Attentive Responses Of Tursiops Truncatus To Anthropogenic Noise Playbacks Before And During The Covid-19-Related Anthropause, Paige E. Stevens, Veda Allen, Jason N. Bruck

Faculty Publications

The effects of anthropogenic noise continue to threaten marine fauna, yet the impacts of human-produced sound on the broad aspects of cognition in marine mammals remain relatively understudied. The shutdown of non-essential activities due to the COVID-19-related anthropause created an opportunity to determine if reducing levels of oceanic anthropogenic noise on cetaceans affected processes of sensitization and habituation for common human-made sounds in an experimental setting. Dolphins at Dolphin Quest Bermuda were presented with three noises related to human activities (cruise ship, personal watercraft, and Navy low-frequency active sonar) both in 2018 and again during the anthropause in 2021 via …

A Molecular Chemodosimeter To Probe “Closed Shell” Ions In Kidney Cells, Rashid Mia

Faculty Publications

Two quinidine-functionalized coumarin molecular probes have been synthesized and have been found to bind metal cations (Cd2+, Co2+, Cu2+, Fe2+, Hg2+, Ni2+, and Zn2+) with high affinity in organic–aqueous media (DMSO–HEPES). The chemodosimeters coordinate with the Zn2+ ions in a two-to-one ratio (molecular probe : Zn2+) with a log β of 10.0 M−2. Upon the addition of the closed-shell metal ions studied, a fluorescence turn-on via an excimer formation is seen at 542 nm due to the quinaldine moiety adopting a syn arrangement when coordinated to the metal Zn2+ ions. Confocal microscopy monitored free Zn2+ ions in the Human Embryonic …

Understanding Across The Senses: Cross-Modal Studies Of Cognition In Cetaceans, Jason N. Bruck, Adam A. Pack

Faculty Publications

Cross-modal approaches to the study of sensory perception, social recognition, cognition, and mental representation have proved fruitful in humans as well as in a variety of other species including toothed whales in revealing equivalencies that suggest that different sensory stimuli associated with objects or individuals may effectively evoke mental representations that are, respectively, object based or individual based. Building on established findings of structural equivalence in the form of spontaneous recognition of complex shapes across the modalities of echolocation and vision and behavior favoring identity echoic–visual cross-modal relationships over associative echoic–visual cross-modal relationships, examinations of transitive inference equivalencies from initially …

Cross-Modal Perception Of Identity By Sound And Taste In Bottlenose Dolphins, Jason N. Bruck, Sam F. Walmsley, Vincent M. Janik

Faculty Publications

While studies have demonstrated concept formation in animals, only humans are known to label concepts to use them in mental simulations or predictions. To investigate whether other animals use labels comparably, we studied cross-modal, individual recognition in bottlenose dolphins (Tursiops truncatus) that use signature whistles as labels for conspecifics in their own communication. First, we tested whether dolphins could use gustatory stimuli and found that they could distinguish between water and urine samples, as well as between urine from familiar and unfamiliar individuals. Then, we paired playbacks of signature whistles of known animals with urine samples from either the same …

Evolutionary Analyses Of Visual Opsin Genes In Frogs And Toads: Diversity, Duplication, And Positive Selection, Ryan K. Schott, Leah Perez, Matthew Kwiatkowski, Vance Imhoff, Jennifer M. Gumm

Faculty Publications

Among major vertebrate groups, anurans (frogs and toads) are understudied with regard to their visual systems, and little is known about variation among species that differ in ecology. We sampled North American anurans representing diverse evolutionary and life histories that likely possess visual systems adapted to meet different ecological needs. Using standard molecular techniques, visual opsin genes, which encode the protein component of visual pigments, were obtained from anuran retinas. Additionally, we extracted the visual opsins from publicly available genome and transcriptome assemblies, further increasing the phylogenetic and ecological diversity of our dataset to 33 species in total. We found …

Conk1 - Forest Pathology Specimen, Robert Z. Selden Jr.

CRHR: Archaeology

Pathology specimen.

Cetacean Acousticwelfare In Wild And Managed-Care Settings: Gaps And Opportunities, Paige E. Stevens, Heather Hill, Jason N. Bruck

Faculty Publications

Cetaceans are potentially at risk of poor welfare due to the animals’ natural reliance on sound and the persistent nature of anthropogenic noise, especially in the wild. Industrial, commercial, and recreational human activity has expanded across the seas, resulting in a propagation of sound with varying frequency characteristics. In many countries, current regulations are based on the potential to induce hearing loss; however, a more nuanced approach is needed when shaping regulations, due to other non-hearing loss effects including activation of the stress response, acoustic masking, frequency shifts, alterations in behavior, and decreased foraging. Cetaceans in managedcare settings share the …

Payment For Ecosystem Services: Rewarding The Landowner Who Conserves The Public Good, Steven H. Bullard, Sarah Fuller

Faculty Publications

It has been said that money doesn’t grow on trees, but any forest landowner or manager will tell you that’s not exactly true— especially when observing a harvesting operation or managing dues from your hunting lease. While timber production and recreation are the most frequently monetized services provided by forests, what about the other goods and services they provide on a continuing basis? Are you or other forest landowners in your area being monetarily rewarded for soil stability, flood control, water filtration, air quality, and the other critical services—known as ecosystem services—provided by forests?

Measuring Building Height Using Point Cloud Data Derived From Unmanned Aerial System Imagery In An Undergraduate Geospatial Science Course, David L. Kulhavy, I-Kuai Hung, Daniel R. Unger, Reid Viegut, Yanli Zhang

Faculty Publications

The use of Unmanned Aerial Systems (UAS), also known as drones is increasing in geospatial science curricula within the United States. Within the Arthur Temple College of Forestry and Agriculture (ATCOFA) at Stephen F. Austin State University, Texas, seniors in the geospatial science program complete capstone projects to evaluate current geospatial technology to investigate complex ecological, social and environmental issues. Under the umbrella of a student initiated and designed senior project, students designed a study to estimate height of buildings with UAS data incorporating UAS data, LP360 and ArcScene programs, and Pictometry web-based interface. Results from a statistical analysis of …

Identification And Functional Analysis Of Thadh1 And Thadh4 Genes Involved In Tolerance To Waterlogging Stress In Taxodium Hybrid ‘Zhongshanshan 406’, Lei Xuan, Jianfeng Hua, Fan Zhang, Zhiquan Wang, Xiaoxiao Pei, Ying Yang, Yunlong Yin, David Creech

Faculty Publications

The Taxodium hybrid ‘Zhongshanshan 406’ (T. hybrid ‘Zhongshanshan 406’) [Taxodium mucronatum Tenore × Taxodium distichum (L.). Rich] has an outstanding advantage in flooding tolerance and thus has been widely used in wetland afforestation in China. Alcohol dehydrogenase genes (ADHs) played key roles in ethanol metabolism to maintain energy supply for plants in low-oxygen conditions. Two ADH genes were isolated and characterized—ThADH1 and ThADH4 (GenBank ID: AWL83216 and AWL83217—basing on the transcriptome data of T. hybrid ‘Zhongshanshan 406’ grown under waterlogging stress. Then the functions of these two genes were investigated through transient expression and overexpression. The results showed that the …

Propranolol Sensitizes Vascular Sarcoma Cells To Doxorubicin By Altering Lysosomal Drug Sequestration And Drug Efflux, Jhuma Saha, Jong Hyuk Kim, Clarissa N. Amaya, Caleb M. Witcher, Ali Khammanivong, Derek M. Korpela, David R. Brown, Josephine Taylor, Brad A. Bryan, Erin B. Dickerson

Faculty Publications

Angiosarcoma is a rare cancer of blood vessel–forming cells with a high patient mortality and few treatment options. Although chemotherapy often produces initial clinical responses, outcomes remain poor, largely due to the development of drug resistance. We previously identified a subset of doxorubicin-resistant cells in human angiosarcoma and canine hemangiosarcoma cell lines that exhibit high lysosomal accumulation of doxorubicin. Hydrophobic, weak base chemotherapeutics, like doxorubicin, are known to sequester within lysosomes, promoting resistance by limiting drug accessibility to cellular targets. Drug synergy between the beta adrenergic receptor (β-AR) antagonist, propranolol, and multiple chemotherapeutics has been documented in vitro, and …

A Comparison Of Running Economy Across Seven Carbon-Plated Racing Shoes, Dustin P. Joubert, Garrett P. Jones

Faculty Publications

Background: Advancements in running shoe technology, particularly in the Nike Vaporfly, have been shown to improve running economy. Other brands have now also developed new, advanced shoes with a carbon-fiber plate and thicker, new midsole foams. However, none of these new shoes have been compared to the Vaporfly. Therefore, we compared the effects of 7 different carbon-plated shoes and 1 traditional racing shoe on running economy.

Methods: Seven carbon-plated shoes: Hoka-RocketX (HRX), Saucony-Endorphin Pro (SEP), Nike-Alphafly (NAF), Asics-Metaspeed Sky (AMS), Nike-Vaporfly2 (NVF2), New Balance-RC Elite (NBRC), Brooks-Hyperion Elite2 (BHE2), and one traditional shoe: Asics-Hyperspeed (AHS) were tested in 12 male …

Species Distribution Modeling For Arid Adapted Habitat Specialists In Zion National Park, Sam Driver, Daniel R. Unger, David L. Kulhavy, Chris M. Schalk

Student Publications

The Arizona toad (Anaxyrus microscaphus) and Jones’ waxy dogbane (Cycladenia humilis var. jonesii) are habitat specialists with historical ranges in the desert southwest and specifically, Zion National Park (ZION). The machine learning method, MaxEnt, constructed species distribution models (SDMs) in ZION for the two study species at 30 m and 900 m spatial resolutions using climate, topographic, and remotely sensed data. Additionally, 900 m forecasting models were constructed to observe the shifts in suitable habitat for the years 2050 and 2070, based off two representative concentration pathway scenarios. Results indicate promising predictive power for both high …

Use Of Altmetrics To Analyze Scholarworks In Natural Resource Management, David L. Kulhavy, R Philip Reynolds, Daniel R. Unger, Matthew W. Mcbroom, I-Kuai Hung, Yanli Zhang

Faculty Publications

Digital preservation of library materials has increased the need for methods to access the documents and contents maintained in digital archives. The use of altmetrics to quantify the impact of scholarly works, including PlumX, is increasing readership by listing articles in reference services. The outreach from the digital repository ScholarWorks at Stephen F. Austin State University (SFASU) highlights the impact within the natural resources community from Digital Commons, Forest Sciences Commons; and from the Natural Products Chemistry and Pharmacognosy Commons. The use of PlumX altmetrics was examined to evaluate usage, impact, and digital audience downloads for the Arthur Temple College …

Reconstruction Of Piñon–Juniper Woodlands In The Sky Islands Of The Davis Mountains, Texas, Usa, Mohammad Bataineh, Brian P. Oswald, Hans M. Williams, Dan Unger, I-Kuai Hung

Faculty Publications

Piñon (Pinus spp. L.)–juniper (Juniperus spp. L.) woodlands’ historical stand structures were recreated to provide reference conditions and document long‐term changes in the Sky Islands of the Davis Mountains, Texas. Restoration of these isolated woodlands requires insights into the range of variability in current and historical stand structures, as well as an understanding of the spatiotemporal establishment and recruitment patterns of tree species. With drastic changes in forests and woodlands of the Southwestern United States widely reported, the main objective of this study was to reconstruct woodland tree temporal and spatial establishment patterns. A stratified random sampling approach was used …

Initial Establishment Success Of Five Forages In An East Texas Loblolly Pine (Pinus Taeda) Silvopasture, Michael Richard, Ken Farrish, Brian P. Oswald, Hans M. Williams, Michael Maurer

Faculty Publications

The establishment at the end of 1 year of five forages was evaluated in a loblolly pine (Pinus taeda L.) silvopasture system. The five forages were: ‘Pensacola” bahiagrass (Paspalum notatum Fluegge), “Texas Tough” bermudagrass (Cynodon dactylon L. Pers.), “Alamo” switchgrass (Panicum virgatum L.), “San Marcos” Eastern gamagrass (Tripsacum dactyloides L.), and a native mix containing 45% “Texas” little bluestem (Schizachyrium scoparium Michx Nash), 15% sand lovegrass (Eragrostis trichodes Nutt. L. Alph. Wood), 15% “Blackwell” switchgrass (Panicum virgatum L.), 10% “Lometa” indiangrass (Sorgastrum nutans L. Nash), 10% “Haskell” sideoats grama (Bouteloua …

Preliminary Flammability Assessment Of Sea Buckthorn From The Netherlands Compared To Known Flammable Shrubs Of The Southern And Western Us, Michael Tiller, Brian P. Oswald, Mathijs Schuijn

Faculty Presentations

Sea buckthorn (Hippophae rhamnoides) is a common coastal species in The Netherlands that potentially burns with extreme energy levels. In this region of Europe that is experiencing increases in wildfire events, the need to gain a greater understanding of energy released when this species burns will improve fire behavior predictions. The objective of this study was to conduct an initial investigation into the foliage flammability of sea buckthorn to a common southern United States native shrub known for its flammability, yaupon (Ilex vomitoria), and two common dominant shrub species in California chaparral, chamise (Adenostoma fasciculatum …

Initial Investigation Of Seasonal Flammability Of Three Invasive East Texas Forest Understory Fuels Using Thermogravimetric Analysis, Mike Tiller, Brian P. Oswald, Alyx Frantzen, Warren Conway, Ikuai Hung

Faculty Publications

East Texas forest understory fuels have become increasingly infested with invasive species which have contributed to greater hazardous fuel loads when combined with decades of fire exclusion and passive management. This study focused on estimating seasonal changes in flammability parameters of invasive yaupon (Ilex vomitoria), Chinese privet (Ligustrum sinense), and Chinese tallow (Triadica sebifera) using thermogravimetric analysis. Foliage and stem samples were collected in the dormant (February) and growing (August) seasons. Differential thermogravimetric (DTG) and proximate analyses were used to estimate species specific flammability parameters related to relative spontaneous ignition temperature (RSIT), gas-phase maximum …

Initial Investigation Of Seasonal Flammability Of Three Invasive East Texas Forest Understory Fuels Using Thermogravimetric Analysis, Michael Tiller, Brian P. Oswald, Alyx Frantzen, Warren Conway, I-Kuai Hung

Faculty Presentations

East Texas forest understory fuels have become increasingly infested with invasive species which have contributed to greater hazardous fuel loads when combined with decades of fire exclusion and passive management. This study focused on estimating seasonal changes in flammability parameters of invasive yaupon (Ilex vomitoria), Chinese privet (Ligustrum sinense), and Chinese tallow (Triadica sebifera) using thermogravimetric analysis. Foliage and stem samples were collected in the dormant (February) and growing (August) seasons. Differential thermogravimetric (DTG) and proximate analyses were used to estimate species specific flammability parameters related to relative spontaneous ignition temperature (RSIT), gas-phase maximum …

Natural Sources And Bioactivities Of 2,4-Di-Tert-Butylphenol And Its Analogs, Fuqiang Zhao, Ping Wang, Rima D. Lucardi, Zushang Su, Shiyou Li

NCPC Publications and Patents

2,4-Di-tert-butylphenol or 2,4-bis(1,1-dimethylethyl)-phenol (2,4-DTBP) is a common toxic secondary metabolite produced by various groups of organisms. The biosources and bioactivities of 2,4-DTBP have been well investigated, but the phenol has not been systematically reviewed. This article provides a comprehensive review of 2,4-DTBP and its analogs with emphasis on natural sources and bioactivities. 2,4-DTBP has been found in at least 169 species of bacteria (16 species, 10 families), fungi (11 species, eight families), diatom (one species, one family), liverwort (one species, one family), pteridiphyta (two species, two families), gymnosperms (four species, one family), dicots (107 species, 58 families), monocots (22 species, …

An Integrated Method For Coding Trees, Measuring Tree Diameter, And Estimating Tree Positions, Linhao Sun, Luming Fang, Yuhi Weng, Siqing Zheng

Faculty Publications

Accurately measuring tree diameter at breast height (DBH) and estimating tree positions in a sample plot are important in tree mensuration. The main aims of this paper include (1) developing a new, integrated device that can identify trees using the quick response (QR) code technique to record tree identifications, measure DBH, and estimate tree positions concurrently; (2) designing an innovative algorithm to measure DBH using only two angle sensors, which is simple and can reduce the impact of eccentric stems on DBH measures; and (3) designing an algorithm to estimate the position of the tree by combining ultra-wide band (UWB) …

Activity Level-Predation Risk Tradeoff In A Tadpole Guild: Implications For Community Organization Along The Hydroperiod Gradient, Nicholas C. Schiwitz, Christopher M. Schalk, Daniel Saenz

Faculty Publications

Increasing activity levels permit greater food intake for use towards growth and reproduction, consequently increasing predation risk via increased detection. Larval anurans are models to examine activity level-predation risk tradeoffs, as they occupy a variety of lentic habitats that impose constraints on the distribution and abundance of species. Ephemeral ponds have a low abundance and diversity of predators and as a result tadpole species tend to have high foraging rates for rapid development. Permanent ponds generally possess a greater diversity and abundance of predators and tadpoles inhabiting these locations tend to have low activity rates or chemical defenses to minimize …

Modeling Early Responses Of Loblolly Pine Growth To Thinning In The Western Gulf Coastal Plain Region, Yuhi Weng, J. Grogan, Dean W. Coble

Faculty Publications

Growth response to thinning has long been a research topic of interest in forest science. This study presents the first 3–4 years of response of loblolly pine (Pinus taeda L.) growth to thinning at different intensities. Data were collected from the East Texas Pine Research Project’s region-wide loblolly pine thinning study, which covers a wide variety of stand conditions. Four treatments, light, moderate, and heavy thinning, respectively having 370, 555, and 740 residual trees per hectare after thinning, and an unthinned control, were included. Individual tree diameter at breast height (dbh) and total height were recorded annually for the …

Integration Of Citygreen Landscape Ecological Analysis Into A Capstone Environmental Science Course, David L. Kulhavy, Daniel R. Unger, Reid Viegut, I-Kuai Hung, Yanli Zhang

Faculty Publications

CITYgreen Geographic Information Systems software was used to develop a campus wide cover type map for Stephen F. Austin State University in an environmental science landscape ecology course. The finding indicated an equal division of forest cover type compared to impervious surface of buildings and paved surface. Once the classification was completed, students chose an area for reforestation identified in CITYgreen, while raising funds for the purchase of trees for the project. Before completing the project, students reviewed tenets of landscape ecology, civic ecology education, and benefits of urban forestry. At the completion of the project, students reviewed service-learning aspects …

Light Emitting Diode (Led) Color And Broiler Growth: Effect Of Supplementing Blue/Green Led To White Led Light On Broiler Growth, Stress, And Welfare, Jill R. Nelson, Joey L. Bray, Juliette Delabbio, Gregory S. Archer

Faculty Publications

Light emitting diode (LED) lighting provides an affordable lighting option for use in commercial poultry production. However, more information is needed to understand the effects of LED color on broiler welfare and growth. Five consecutive flocks (1 in summer, 1 in fall, 2 in winter, and 1 in spring) of straight run Ross 708 × Ross 708 broilers were reared in commercial type barns for 45 D. For white only (WO) treatment, birds were reared under white LED only (Agrishift MLB). For white supplemented (WS) treatment, birds were reared under white LED (Agrishift MLB) in the center aisle, with supplemental …

Comparing Canopy Metric Estimations Using Three Conifer Species In The Netherlands, Alan Duncan Hibler, Brian P. Oswald, Nienke Brouwer, Ester Willemsen, Hans M. Williams

Faculty Publications

A growing concern associated with fire in The Netherlands is estimating the spread of wildfire, however often the data needed to estimate canopy fires are lacking. The primary parameter required is canopy bulk density (CBD), which requires estimations of canopy gap fraction and leaf area index (LAI). The accuracy of three indirect methods of estimating CBD (a densiometer, hemispherical canopy photographs (HCP), and a LI-COR LAI 2200c plant canopy analyzer) was compared for three common tree species in the Netherlands [Scots pine (Pinus sylvestris L.), black pine (Pinus nigra Arnold) and Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco)]. No …

Comparison Of An Intermittent, Short-Dawn/Dusk Photoperiod With An Increasing, Long-Dawn/Dusk Photoperiod On Broiler Growth, Stress, And Welfare, Jill R. Nelson, Joey L. Bray, Juliette Delabbio, Gregory S. Archer

Faculty Publications

Photoperiod has been shown to significantly affect broiler performance. However, the effects of the traditional 1-min dimming period on broiler growth and welfare are unclear. In this study, 4 consecutive trials were conducted to compare the effects of an intermittent, short-dawn/dusk photoperiod (ISD) to an increasing, long-dawn/dusk photoperiod (ILD) on broiler growth, stress, and welfare. Straight run day-of-hatch Ross 708 × Ross 708 broilers were placed in 1 of 4 commercial broiler barns (2 b of 26,200 birds each per treatment) and grown to 45 D of age. The photoperiod in the ISD treatment consisted of 24L:0D day 0 to …

The Effect Of Sodium Chloride On Hybrid Taxodium Selections, Anna Koonce, Edward Bush, David Creech

Faculty Publications

Saltwater intrusion is a major cause of coastal erosion. New hybrid bald cypress species have been shown to exhibit salinity tolerance compared to native bald cypress species. Planting these hybrids, or Nanjing Bot Garden genotype (NBG), trees where their roots can stabilize soil and preserve land may reduce coastal erosion in areas subjected to saltwater intrusion. The purpose of this experiment was to determine whether or not selected bald cypress NBG genotype tree species survive better than native bald cypress trees in areas inundated with saline water. Leaves were harvested, dried and analyzed for their elemental concentration. NBG genotype trees …

Bias And Misrepresentation Of Science Undermines Productive Discourse On Animal Welfare Policy: A Case Study, Kelly Jaakkola, Jason N. Bruck, Richard C. Connor, Stephen H. Montgomery, Stephanie L. King

Faculty Publications

Reliable scientific knowledge is crucial for informing legislative, regulatory, and policy decisions in a variety of areas. To that end, scientific reviews of topical issues can be invaluable tools for informing productive discourse and decision-making, assuming these reviews represent the target body of scientific knowledge as completely, accurately, and objectively as possible. Unfortunately, not all reviews live up to this standard. As a case in point, Marino et al.’s review regarding the welfare of killer whales in captivity contains methodological flaws and misrepresentations of the scientific literature, including problematic referencing, overinterpretation of the data, misleading word choice, and biased argumentation. …