Life Sciences Commons^™

Research: South Dakota State University, Spring 2017, Christie Delfanian, Emily Weber

State of Discovery South Dakota State University's Research Magazine

Pharmacy researcher investigates how aspirin kills cancer cells [page] 1
Problem-solving, cornerstone of SDSU research [page] 2
Fluid flow model evaluates clotting risk in new stent graft design [page] 2
Sanford research project inspires graduate student [page] 3
Experience key to nurses' comfort in communicating with terminally ill patients [page] 4
Nondigestible starch feeds gut microbes, reduces inflammation [page] 5
Researchers investigate workings if antibody therapeutics [page] 6
DNA, RNA sequencing available in campus to researchers statewide [page] 7
QUBIC-R software helps researchers model, visualize gene expression networks [page] 8
Scientists assess survival of swine viruses in imported feed ingredients …

Growing South Dakota (Spring 2017), College Of Agriculture &. Biological Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

This issue contains the 2016 South Dakota Agricultural Experiment Station Annual Report.

[Page] 3 Opportunities With Oats SDSU Researchers Strive to Improve Varieties [Page] 6 Stopping Stem Canker Plant Pathologists Making Progress To Keep This Disease At Bay
[Page] 7 Disease Detectives Vet Scientists Researching Another Emerging Virus [Page] 8 Community Support Devastating West River Fire Brings Ag Industry Together
[Page] 10 Research In Progress Dakota Lakes Research Farm Investigates Three Big Ideas
[Page] 14 Water Quality Quest Understanding E. Coli Behavior Aims To Aid Water Quality In Rivers & Streams
[Page] 15 Verifying Ag Land Valuation Researchers Assist In …

Biomass Yield Of Switchgrass Cultivars Under High- Versus Low-Input Conditions, Michael D. Casler, Sergio Sosa, Lindsey Hoffman, Hilary Mayton, Calvin Ernst, Paul R. Adler, Arvid R. Boe, Stacy A. Bonos

Agronomy, Horticulture and Plant Science Faculty Publications

Switchgrass (Panicum virgatum L.) is undergoing development as a biomass crop to support conversion of cellulosic biomass to energy. To avoid the competition of biomass with food or feed crops, most commercialization proposals suggest that switchgrass should be grown exclusively on marginal lands that are not fit for food or feed production. The objective of this study was to investigate the potential for cultivar x environment interactions that would affect the methods and approaches for breeding and evaluating switchgrass cultivars, including both upland and lowland types, for high-input versus low-input types of environments. Biomass yield was measured on 14 cultivars …

Quantitative Analysis Of Endocytosis Of Macrophage Growth Factor Receptor By Molecular Imaging, Victor Georgiev, Emily Toering, Christopher Callahan

The Journal of Undergraduate Research

Endocytosis is a critical cellular process responsible for nutrient uptake, sampling the environment, and cellular signaling. Endocytosis of growth factor receptors is an important step in the regulation of receptor signaling functions. The macrophage growth factor receptor controls growth and differentiation of macrophages, however, the pathway by which the receptor is internalized is not well understood. The analysis showed that for the first time, knockout of endophilin A2 decreases the internalization of macrophage growth factor receptor in primary bone marrow macrophages. This shows that fast endophilin-mediated endocytosis plays a role in the control of the amount of growth factor receptors …

Corn Silage Variety Trial Archive, Jonathan Kleinjan, David Casper, Kevin K. Kirby, S. M. Hawks

SDSU Extension Publications Archive

This report features the available corn silage data from 2003-2017. Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

Evaluating Adaptions Of Soft Red Winter Wheat In Eastern Region Of Usa, Dilmini Alahakoon, Anne Fennell, Jixiang Wu

Agronomy, Horticulture and Plant Science Faculty Publications

Identification of winter wheat genotypes that are highly adapted to a wide range of environmental conditions is one of the most important wheat research objectives. Multienvironment trials (METs) under diverse environments is a commonly used practice to evaluate mean performance and yield stability. However, locations used and genotypes planted may vary from year to year which may cause yield stability analysis to be statistically challenging. In this study, we evaluated yield trial data containing 117 eastern soft red winter wheat genotypes that were grown in 35 locations in eastern production areas and four growing seasons (2012/2013 to 2015/2016). We used …

Propelled Abrasive Grit Applications For Weed Management In Transitional Corn Grain Production, Mauricio Enzo-Barradas, Claire N. Friedrichsen, Frank Forcella, Dan Humberg, Sharon A. Clay

Agronomy, Horticulture and Plant Science Faculty Publications

Weed control is challenging to farmers who are transitioning from production systems that use synthetic herbicides to organic systems. A 2-year field study examined air-propelled corncob grit abrasion for in-row weed control efficacy and effect on corn yield. Grit was applied based on corn vegetative developmental stages with one (V1, V3 or V5), two (V1 + V3, V1 + V5, or V3 + V5), or three (V1 + V3 + V5) applications. Flame-weeding or cultivation was used after the V5 application for between-row weed control. Grit applications decreased in-row weed densities by about 60% (α = 0.05) and biomass up …

Fates Of Ovules In Groundplum Milk-Vetch (Astragalus Crassicarpus Nutt.) In South Dakota, Arvid A. Boe, Paul J. Johnson

Oak Lake Field Station Research Publications

Groundplum milk-vetch (Astragalus crassicarpus Nutt.) is a native legume found on gravelly to sandy prairie uplands throughout central North America. The large and fleshy fruits, or pods, of this species were consumed by indigenous people and European settlers, and are cached by rodents. Our previous research on native legumes of the northern Great Plains indicated seed predation by insects, notably bruchid beetles belonging to the genus Acanthoscelides Schilsky, was a dominant factor determining viable seed production in natural and artificial plant assemblages. However, although we have studied the reproductive biology of several species of Astragalus L., none had fleshy pods. …

Spring Wheat Variety Trial Archive, Robert Hall, Kevin Kirby, John Rickertsen, Bruce Swan, G. Piechowski, Jesse Hall, Nathan Mueller, Christopher Graham, S. M. Hawks, Jonathan Kleinjan

SDSU Extension Publications Archive

Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

Oats Variety Trial Archive, Robert Hall, Kevin K. Kirby, John Rickertsen, Bruce Swan, G. Piechowski, Jesse Hall, S. M. Hawks, Nathan Mueller, Christopher Graham, Jonathan Kleinjan, Shaukat Ali

SDSU Extension Publications Archive

This report features the available oats data from 2003-2017. Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

Grain Sorghum Variety Trial Archive, John Rickertsen, Bruce Swan, Nathan Mueller, Christopher Graham, Jonathan Kleinjan, Kevin Kirby, Dwayne Beck, Michael Swan

SDSU Extension Publications Archive

This report features the available sorghum data from 2003-2017. Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

Sunflower & Flax Hybrid Performance And Variety Trial Archive, Kathleen Grady, Lee Gilbertson, Thandiwe Nleya, John Rickertsen, Bruce Swan, Febina Mathew, Christopher Graham, Nathan Braun, Paul Okello

SDSU Extension Publications Archive

This report features the available sunflower and flax data from 2003-2017. Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

Alfalfa Variety Trial Results Archive, Vance Owens, R. Bortnem, D. Gustafson, E. Omdahl, Chris Lee, Peter Jeranyama, Matt Hansen, Karla Hernandez

SDSU Extension Publications Archive

Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

Soybean Variety Trial Archive, Kevin Kirby, Robert Hall, G. Piechowski, Jesse Hall, S. M. Hawks, Nathan Mueller, Jonathan Kleinjan

SDSU Extension Publications Archive

This report features the available soybean variety trial data from 2003-2017. Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

Corn Hybrid Trial Archive, Robert Hall, Kevin Kirby, G. Piechowski, Nathan Mueller, Jonathan Kleinjan, Jesse Hall, S. M. Hawks

SDSU Extension Publications Archive

This report features the available corn data from 2003-2017. Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

Jackrabbit Dairy & Food Review, Vikram V. Mistry

The Jackrabbit Dairy & Food Review

No abstract provided.

Winter Wheat Variety Trial Archive, John Rickertsen, Robert Hall, Amir Ibrahim, Kevin Kirby, Thandiwe Nleya, Bruce Swan, Steve Kalsbeck, Bill Berzonsky, Nathan Mueller, Christopher Graham, Shaukat Ali, S. M. Hawks

SDSU Extension Publications Archive

Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

Yoga And The Ability To Counteract Negative Effects Of Stress And Trauma, Allison R. Steinwand, Staci L. Born

Counseling and Human Development Faculty Publications

Many individuals today struggle with the effects of chronic stress, whether due to social and environmental factors or as a result of trauma embedded in their psychophysiology. Research has demonstrated that once an individual endures a traumatic event, there are undesirable changes that occur in the brain and body It is of the utmost importance that mental health counselors consider the relationship between the body and mind. The purpose of this paper is to describe the negative impact traumatic experiences and chronic stress has on the brain and body. Furthermore, the ways in which yoga practice can mitigate trauma symptoms …

Fates Of Ovules In Groundplum Milk-Vetch (Astragalus Crassicarpus Nutt.) In South Dakota, Arvid Boe, Paul J. Johnson

Native Plant Focused Publications

Groundplum milk-vetch (Astragalus crassicarpus Nutt.) is a native legume found on gravelly to sandy prairie uplands throughout central North America. The large and fleshy fruits, or pods, of this species were consumed by indigenous people and European settlers, and are cached by rodents. Our previous research on native legumes of the northern Great Plains indicated seed predation by insects, notably bruchid beetles belonging to the genus Acanthoscelides Schilsky, was a dominant factor determining viable seed production in natural and artificial plant assemblages. However, although we have studied the reproductive biology of several species of Astragalus L., none had fleshy pods. …

Improving Survey Methodology To Monitor Rare Grassland Birds In South Dakota, Kassondra Hendricks

Electronic Theses and Dissertations

Breeding Bird Survey (BBS) data for grassland bird species has shown the most rapid population decline of any other bird group. Current roadside survey techniques, however, may fall short of providing accurate numbers of rare grassland bird species such as chestnut-collared longspur (Calcarius ornatus), lark bunting (Calamospiza melanocorys), Sprague’s pipit (Anthus spragueii), and Baird’s sparrow (Ammodramus bairdii). Trends resulting from roadside data for grassland birds are oftentimes determined to be statistically insignificant because many grassland bird species occur on too few routes, occur in low numbers per route, and show high annual fluctuations in number. It is possible roadside surveys …

Identification Of Candidate Cellulose Utilizing Bacteria From The Rumen Of Beef Cattle, Using Bacterial Community Profiling And Metagenomics, Lee Opdahl

Electronic Theses and Dissertations

The ruminal microbiome allows ruminant animals to convert cellulosic biomass into food products. A majority of ruminal microorganisms remain uncharacterized due, in part, to the complexity of ruminal microbial communities. In order to gain further insight, selection-based batch culturing from bovine rumen fluid, in combination with metagenomics, was used to identify and characterize previously uncharacterized rumen bacteria capable of metabolizing cellulose, which was supplemented as a purified substrate. 16S rRNA-based population analysis was used to identify rumen bacteria enriched within 14 days of culturing. As a result of 4 independent experiments, seven different candidate cellulose-utilizing species-level operational taxonomic units (OTUs) …

Human Dimensions Of Habitat Loss In The Plains And Prairie Potholes Ecoregion, Lily A. Sweikert

Electronic Theses and Dissertations

The Plains and Prairie Potholes Ecoregion (PPPE), is located in the north-central contiguous United States and is one of the most imperiled grassland regions in the world. Most of the region is privately owned and used for the production of agricultural commodities. In addition to its direct benefits to humanity, the PPPE provides multiple ecosystem services including, soil and water quality improvements, carbon sequestration, weather amelioration, and wildlife habitat. Recent increases in expansion of row crop agriculture concerns conservation practitioners about the long-term integrity of the PPPE. Conservation practitioners are looking to improve their private landowner conservation initiatives in the …

Investigation Of Candidate Loci Associated With Maize Perennialism, Anjun Ma

Electronic Theses and Dissertations

Developing perennial grain crops is an effective and crucial way to prevent soil erosion caused by conventional agriculture of using annual crops while meeting the increasing need of global food demand. We hypothesized that the regrowth in Zea might be controlled by two dominant complementary genes. F1 hybrids were created by crossing Zea diploperennis Iltis, Doebley & R. Guzman with annual Zea mays L. ssp. mays inbred line B73. A Total of 134 F2 plants derived from nine F1 were planted and phenotyped. A subpopulation of 94 F2 plants were genotyped with Genotype-by- Sequencing (GBS) and called 10,431 SNPs after …

Evaluation Of The Deadwood Bighorn Sheep Herd Translocation, Ty J. Werdel

Electronic Theses and Dissertations

From 2015-2017, we evaluated a newly established bighorn sheep (Ovis canadensis) herd in the Deadwood Region of the Black Hills, South Dakota. Our objectives were to 1a) determine annual survival rates, 1b) determine cause-specific mortality, 1c) estimate population size, 2a) assess genetic diversity, 2b) assess disease prevalence, 3) evaluate movement patterns post-release, 4a) evaluate 3rd-order habitat selection, and 4b) estimate herbaceous biomass at foraging sites post-release of translocated bighorn sheep. In February 2015, we captured and translocated 26 bighorn sheep from the Luscar Mine near Hinton, Alberta, Canada to the Deadwood Region of the Black Hills, South Dakota. Overall annual …

Performance Of The Producer Accumulator In Corn And Soybean Commodity Markets, Chad Te Slaa

Electronic Theses and Dissertations

This research quantifies risk reduction and performance of the producer accumulator contract in corn and soybean markets. To quantify performance, we use three alternative theoretical pricing models to estimate historical producer accumulator contract specifications in corn and soybean markets. We then compare the performance of the producer accumulator to eight alternative agricultural marketing strategy portfolios that are also used in new generation grain contracts. The performance measures we compare are: average bushel price that would be received by the producer, daily portfolio risk, and the Sharpe ratio. The period we examine performance was between 2008 and 2017. We investigate performance …

An Evaluation Of Nitrogen Supplementation And Processed Soy Fractions On The Performance Of Cultured Fishes, Brandon M. White

Electronic Theses and Dissertations

World population growth has resulted in an increased demand for a sustainable food supply. This rapid growth coupled with an increased per capita consumption of seafood, has resulted in many of the world’s marine fisheries being over-exploited in an effort to meet the global demand for seafood. Aquaculture has attempted to fill the supply and demand gap created by the dwindling supply of fish in the world’s oceans. Fishmeal (FM) has traditionally been the primary protein ingredient in aquafeeds fed to farm-raised fish, however its unstable supply and increasing price have driven researchers to identify alternative protein sources. Soybean meal …

Using Remote Sensing To Estimate Crop Water Use To Improve Irrigation Water Management, Arturo Reyes-Gonzalez

Electronic Theses and Dissertations

Irrigation water is scarce. Hence, accurate estimation of crop water use is necessary for proper irrigation managements and water conservation. Satellite-based remote sensing is a tool that can estimate crop water use efficiently. Several models have been developed to estimate crop water requirement or actual evapotranspiration (ETa) using remote sensing. One of them is the Mapping EvapoTranspiration at High Resolution using Internalized Calibration (METRIC) model. This model has been compared with other methods for ET estimations including weighing lysimeters, pan evaporation, Bowen Ratio Energy Balance System (BREBS), Eddy Covariance (EC), and sap flow. However, comparison of METRIC model outputs to …

A Survey Of Non-Crop Plants As Alternative Hosts To Raspberries For Drosophila Suzukii (Spotted Wing Drosophila), Bennur Agbaba

Electronic Theses and Dissertations

The spotted wing fruit fly (SWD), Drosophila suzukii (Matsumura) (Diptera: Drosophilidae), is a pest of small fruit crops. Unlike most other Drosophila species, this insect can oviposit into ripe fruits, rendering them unmarketable. Drosophila suzukii is spreading quickly throughout the continental United States including South Dakota, and causing serious damage to horticultural crops, particularly those within the fruit industry. This study determines the D. suzukii host plant both commercial crops and native plants, and defines non-crop host plants by season in South Dakota. Further, it confirms the occurrence of the fly in southeastern South Dakota and identifies high-risk infestation areas …

Phylogenetic And Associated Phenotypic Analysis Of Salmonella Enterica Serovar Mbandaka, Linto Antony

Electronic Theses and Dissertations

Food borne salmonellosis is a global public health concern caused by Salmonella, that causes enteric disease both in humans and animals. Most of the pathogenic Salmonella serovars fall under Salmonella enterica subspecies enterica, a major subspecies group that includes more than 50% of total identified Salmonella serovars. New serovars are identified each year and overall incidence of salmonellosis may mask the outbreak incidences caused by individual serovars. Infrequently reported serovar outbreaks can be a significant threat to public health. Salmonella enterica serovar Mbandaka is one of the infrequently reported causative agents of non-typhoidal salmonellosis in USA. But it …

Assessment Of Hard Red Spring Wheat Germplasm For Cold Temperature Germination Tolerance, Ulas Cinar

Electronic Theses and Dissertations

When planted early in the season, hard red spring wheat (HRSW; Triticum aestivum L.) can help for both vegetative growth and yield providing maximum agronomic productivity. The north-central Great Plains growing region is considered best for developing varieties that germinate in sub-optimal temperatures. Within limited regions, spring wheat planting typically occurs between mid-April and late May, when soil temperatures are 8 °C to 14 °C. Early season planting may result in freezing stress, while late season planting can result in heat and drought stress. Our study tested the germination rate of hard red spring wheat (HRSW) over a range of …