Life Sciences Commons^™

The Body Eclectic: Viewing Bodily Modification In David Nebreda, David Houston Jones

Reconstruction: Studies in Contemporary Culture

[First paragraph]

David Nebreda's work presents current thinking on body/performance art with a dilemma. In stretching social prescriptions of the (re)presentable body, it exemplifies a pervasive anxiety concerning bodily modification and the politics of looking, and demands a new theorisation of the body in photographic representation. Autoportraits (2000) depicts a series of visibly emaciated bodies on which wounds are inflicted by knives, cords and flames [1]. The photographs document the strict schedules of discipline to which the bodies are subjected, and sometimes represent the very moment at which practices of bodily modification are executed. It is this subject-matter which threatens …

Nanosecond Pulsed Electric Fields: A New Stimulus To Activate Intracellular Signaling, Stephen J. Beebe, Karl H. Schoenbach

Bioelectrics Publications

When new technologies are introduced into the scientific community, controversy is expected and both excitement and disappointment enrich the lives of those who initiate the new ideas. It becomes the mission of the “inventors” to embrace the burden of proof to establish their ideas and convince the skeptics and disbelievers who will undoubtedly temper their enthusiasm and test their patience. While open mindedness is generally a scientific motto, those who review patents, manuscripts, and grants do not always readily practice it, even when the evidence is convincingly presented; old ideas and concepts often die hard. So it has been and …

Bioprospecting, Philip A. Reed

STEMPS Faculty Publications

The article discusses that the product applications of bioprospecting are almost limitless. This area of biotechnology has been labeled bioprospecting, and it is a practice that is creating worldwide controversy. Defined simply, bioprospecting is "scientific research that looks for a useful application, process, or product in nature." However, as with most biotechnologies, the definition does not address the complexities of bioprospecting. Archeologists are finding that some biotechnologies, such as the use of herbs for medicine and the use of fermentation and yeast in food products, date back 5,000 to 10,000 years (De Miranda, 2004). The four main categories of biotechnologies …

Iron In The Sargasso Sea (Bermuda Atlantic Time-Series Study Region) During Summer: Eolian Imprint, Spatiotemporal Variability, And Ecological Implications, Peter N. Sedwick, T. M. Church, A. R. Bowie, C. M. Marsay, S. J. Ussher, K. M. Achilles, P. J. Lethaby, R. J. Johnson, M. M. Sarin, D. J. Mcgillicuddy

OES Faculty Publications

We report iron measurements for water column and aerosol samples collected in the Sargasso Sea during July-August 2003 (summer 2003) and April-May 2004 (spring 2004). Our data reveal a large seasonal change in the dissolved iron (dFe) concentration of surface waters in the Bermuda Atlantic Time-series Study region, from ∼1-2nM in summer 2003, when aerosol iron concentrations were high (mean 10 nmol/m^-3), to ∼0.1-0.2nM in spring 2004, when aerosol iron concentrations were low (mean 0.64 nmol/m^-3). During summer 2003, we observed an increase of ∼0.6nM in surface water dFe concentrations over 13 days, presumably due to …

Chemistry Of Surface Waters: Distinguishing Fine-Scale Differences In Sea Grass Habitats Of Chesapeake Bay, Emmanis Dorval, Cynthia M. Jones

OES Faculty Publications

We tested the hypothesis that the physical and chemical processes acting in sea grass habitats of the lower Chesapeake Bay are spatially structured and that dissolved elemental chemistry of sea grass-habitat surface waters have their own unique identity. We sampled surface waters from July to September 2001 in five sea grass habitats of the lower bay: Potomac, Rappahannock, York, Island (Tangier-Bloodsworth), and Eastern Shore. Dissolved Mg, Mn, Sr, and Ba concentrations were measured by sector field inductively coupled plasma-mass spectrometry. As expected, Mg, Sr, and Ba exhibited conservative behavior, but Mn exhibited nonconservative behavior along the salinity gradient. Spatial differences …

Biophysical Mechanisms Of Larval Fish Ingress Into Chesapeake Bay, Jonathan A. Hare, Simon Thorrold, Harvey Walsh, Christian Reiss, Arnoldo Valle-Levinson, Cynthia Jones

OES Faculty Publications

Selective tidal stream transport is hypothesized as a dominant mechanism by which larvae of marine animals move through estuarine openings. For larvae moving from the shelf to estuarine habitats, selective tidal stream transport proposes that larvae are higher in the water column during flood tide and lower in the water column during ebb tide. Although a number of studies conclude that selective tidal stream transport is the mechanism responsible for larval ingress, few studies consider alternative mechanisms or consider passive explanations for tidal patterns in larval distributions. We examined the biophysical mechanisms responsible for larval ingress into Chesapeake Bay using …

A Unique Seasonal Pattern In Phytoplankton Biomass In Low-Latitude Waters In The South China Sea, Chun-Mao Tseng, George T. F. Wong, I.-I. Lin, C.-R. Wu, K.-K. Liu

OES Faculty Publications

A distinctive seasonal pattern in phytoplankton biomass was observed at the South East Asian Time series Study (SEATS) station (18°N, 116°E) in the northern South China Sea (SCS). Surface chlorophyll-a, depth integrated chlorophyll-a and primary production were elevated to 0.3 mg/m³, ~35 mg/m² and 300 mg-C/m²/d, respectively, in the winter but stayed low, at 0.1 mg/m³, ~15 mg/m² and 110 mg-C/m²/d as commonly found in other low latitude waters, in the rest of the year. Concomitantly, soluble reactive phosphate and nitrate+nitrite in the mixed layer also became …

High-Temperature Fluorescent In Situ Hybridization For Detecting Escherichia Coli In Seawater Samples, Using Rrna-Targeted Oligonucleotide Probes And Flow Cytometry, Ying Zhong Tang, Karina Yew Hoong Gin, Tok Hoon Lim

OES Faculty Publications

Fluorescence in situ hybridization (FISH) is a widely used method to detect environmental microorganisms. The standard protocol is typically conducted at a temperature of 46°C and a hybridization time of 2 or 3 h, using the fluorescence signal intensity as the sole parameter to evaluate the performance of FISH. This paper reports our results for optimizing the conditions of FISH using rRNA-targeted oligonucleotide probes and flow cytometry and the application of these protocols to the detection of Escherichia coli in seawater spiked with E. coli culture. We obtained two types of optimized protocols for FISH, which showed rapid results with …

The Effect Of Growth Rate, Phosphorus Concentration, And Temperature On N-2 Fixation, Carbon Fixation, And Nitrogen Release In Continuous Cultures Of Trichodesmium Ims101, Margaret R. Mulholland, Peter W. Bernhardt

OES Faculty Publications

With the use of continuous culture systems, rates of dinitrogen (N₂) and carbon (C) fixation and nitrogen (N)- and C-based doubling times were assessed in Trichodesmium IMS101 growing exponentially at steady state dilution rates of 0.10, 0.20, and 0.33 d^-1 (doubling times of 10, 5, and 3 d - within the range reported for natural populations). Rates of C fixation, N₂ fixation, and N release were examined in replicate culture systems with several techniques. Biomass-specific C uptake varied little with population doubling time, but N₂ fixation and N release varied markedly among treatments. Total daily …

Do Viruses Affect Fecundity And Survival Of The Copepod Acartia Tonsa Dana?, Lisa A. Drake, Fred C. Dobbs

OES Faculty Publications

Naturally occurring viruses are extremely abundant in aquatic systems, and they infect bacteria, cyanobacteria, prokaryotic and eukaryotic phytoplankton, heterotrophic nanoflagellates, fish and mammals. Viral infections of single-celled organisms have been studied intensively in the past decade, but little is known about the effects of viruses on aquatic metazoans, other than for some economically important species. Because zooplankton assemblages are often dominated in number and biomass by copepods, we used them as model organisms to study the effects of naturally occurring viruses on higher trophic levels. We attempted to induce viral infection in laboratory-reared cultures of the estuarine copepod Acartia tonsa …

Ridding Ships' Ballast Water Of Microorganisms, Fred C. Dobbs, Andrew Rogerson

OES Faculty Publications

( First paragraph) A complex assemblage of microorganisms exists in nearly every aquatic system on earth. In lakes and oceans, every milliliter of water contains about 10² protists (single-celled eukaryotes), 10⁶ bacteria, and 10⁷–10⁹ viruses. Therefore, billions of microorganisms inevitably enter ships’ ballast tanks during normal operations. It has been argued that microorganisms must certainly be frequent invaders of coastal ecosystems, given the high densities of bacteria and viruses in ballast water—10⁸ and 10⁹ organisms per liter, respectively (1)—their potentially high reproductive rates, broad tolerances to physical conditions, and ability to form resting …

Regulation Of Sparc Gene Expression By The Activator Protein 1 Transcription Factor, Joseph William Briggs

Theses and Dissertations in Biomedical Sciences

Overexpression of the c-Jun proto-oncogene in MCF7 breast cancer cells results in a variety of phenotypic changes related to malignant progression including a shift to estrogen independent growth, increased cell motility and invasion. Concurrent with these phenotypic changes are alterations to cellular gene expression patterns. One gene that becomes highly upregulated is SPARC (secreted protein acidic and rich in cysteine). Increased SPARC expression is associated with malignant progression in a variety of different cancers, although little is known regarding the mechanisms of SPARC gene regulation. Therefore, the objectives of this study were: (1) to determine the mechanisms by which c-Jun …

Benthic Fisheries Ecology In A Changing Environment: Unraveling Process To Achieve Prediction, Mark J. Butler Iv

Biological Sciences Faculty Publications

Marine fisheries and the ecosystems that sustain them are increasingly beset by environmental deterioration, and the problem is particularly acute in coastal zones where human Populations are increasing. In the best of circumstances, fishery managers are faced with the multiple, often conflicting, demands of resource users, politicians, and scientists when considering strategies for resource management. A further challenge is that management decisions must be made against a backdrop of a deteriorating environment and the shifting status of coastal ecosystem integrity. Traditional tools for single-species management may be inadequate in these settings. Furthermore. the necessary empirical data to appropriately parameterize models …

The Architecture Of A Proteomic Network In The Yeast, Emad Ramadan, Christopher Osgood, Alex Pothern

Biological Sciences Faculty Publications

We describe an approach to clustering the yeast protein-protein inter-action network in order to identify functional modules, groups of proteins forming multi-protein complexes accomplishing various functions in the cell. We have developed a clustering method that accounts for the small-world nature of the network. The algorithm makes use of the concept of k-cores in a graph, and employs recursive spectral clustering to compute the functional modules. The computed clusters are annotated using their protein memberships into known multi-protein complexes in the yeast. We also dissect the protein interaction network into a global subnetwork of hub proteins (connected to several clusters), …

Comparison Of Phytoplankton And Autotrophic Picoplankton Populations Over A 24-Hour Period From A Pond's Surface And Subsurface Waters, Harold G. Marshall, Lubomira Burchardt, Elżbieta Wilk-Woźniak

Biological Sciences Faculty Publications

Phytoplankton abundance and composition relationships within the surface layer changed over short time periods (4-6 hours) in comparison with more constant associations at 2 cm below the surface. Both strata had a diverse algal flora (>50 taxa), but no distinct neuston assemblage characterized the surface layer algal composition over the 24-hour study. The similarity between the two strata indicated the floral composition of the surface layer came from the water column algae below the surface. Chlorophytes, diatoms, cyanobacteria, and cryptophytes represented the most abundant algal categories for both strata with a total mean phytoplankton abundance of 3,566 cells ml …

Effects Of Human Disturbances On The Behavior Of Wintering Ducks, Melissa L. Pease, Robert K. Rose, Mark J. Butler

Biological Sciences Faculty Publications

Human activity causes wintering waterfowl to expend energy to avoid humans at a time in their annual cycle when energy conservation is important to survival, migration, and breeding reserves. Understanding the effects of recreational activities on waterfowl is important to managing natural resource areas where migratory birds depend on wetland habitat for resting and feeding. We investigated responses of 7 species of dabbling ducks to 5 different experimental human activities, (a pedestrian, a bicyclist, a truck traveling at 2 different speeds, and an electric passenger tram). Responses of ducks depended on type of disturbance, species, and distance from disturbances. Most …

A Review Of Phytoplankton Composition Within Chesapeake Bay And Its Tidal Estuaries, Harold G. Marshall, Lubomira Burchardt, Richard Lacouture

Biological Sciences Faculty Publications

Based on a continuous 20-year data base ofmonthly sampling in Chesapeake Bay and tidal regions of its major tributaries, 1454 phytoplankton taxa have been identified in these waters. They represent a diverse assemblage of species with a dominant diatom flora throughout the year, in addition to large seasonal representation by chlorophytes, cyanobacteria, cryptophytes and dinoflagellates. Included among this flora were 34 potential harmful or toxin producing species. The phytoplankton compositions associated with the seasonal successional patterns are discussed, in addition to characterizing the dominant floral relationships, with comparison to early composition records within the Bay. Several of the present day …

Feeding Ecology Of Juvenile Spiny Lobster, Panulirus Interruptus, On The Pacific Coast Of Baja California Sur, Mexico, Verónica Castañeda‐Fernández‐De‐Lara, Elisa Serviere‐Zaragoza, Sergio Hernández‐Vázquez, Mark J. Butler Iv

Biological Sciences Faculty Publications

Many aspects of the early life history of the red lobster Panulirus interruptus are little known, including the relationship between habitat structure, food resource availability, and nutrition of juveniles. We investigated the spatial and temporal differences in food intake, diet composition, and nutritional condition of juveniles at two sites along the Pacific coast of the Baja California Peninsula (Mexico) with contrasting oceanographic and biological conditions. One site (Arvin) is located inside a protected bay, Bahia Tortugas, where the waters are cooler and temperate seagrasses and macroalgae are the dominant benthic flora. The second site (Queen) in Bahia Sebastian Vizcaino was …

New Species Of Amphipod Crustaceans In The Genera Tegano And Melita (Hadzioidea : Melitidae) From Subterranean Groundwaters In Guam, Palau, And The Philippines, Thomas R. Sawicki, John R. Holsinger, Thomas M. Iliffe

Biological Sciences Faculty Publications

Three new species of Tegano are described, two from caves on Panglao Island, Bohol, Philippines, and one from a cave on Peleliu Island, Palau. Sriha vagabunda from Sri Lanka is reassigned to the genus Tegano based primarily on the high degree of similarity between Sriha vagabunda and species of Tegano and the fact that these species exhibit a great deal of variation in the reduction of the mandibular palp. A new species of Melita with characters intermediate between those defining the genera Abludomelita, Melita, and Paraniphargus is described from a spring on Guam. The characters of the new …

Defensin In Ticks: Molecular Characterization, Expression, And Role In Innate Immunity, Daniel E. Sonenshine, Wayne L. Hynes, Shane M. Ceraul, Michelle Todd

Biological Sciences Faculty Publications

No abstract provided.

Population Dynamics Of Oryzomys Palustris And Microtus Pennsylvanicus In Virginia Tidal Marshes, Christopher P. Bloch, Robert K. Rose

Biological Sciences Faculty Publications

Oryzomys palustris (marsh rice rat) and Microtus pennsylvanicus (meadow vole) cohabit coastal marshes in the mid-Atlantic US. Both were live-trapped for 23 months at two tidal marsh sites in Virginia to assess their demography near the margins of their distributions. In the presence of dense vegetation, population dynamics of the two species were seasonal and positively correlated, with densities declining through the winter. At the more sparsely vegetated site, densities of both species were lower, and densities of M. pennsylvanicus were negatively correlated with those of O. palustris. Patterns of reproduction differed between the species. O. palustris was reproductively …

Transport Of The Harmful Bloom Alga Aureococcus Anophagefferens By Oceangoing Ships And Coastal Boats, Martina A. Doblin, Linda C. Popels, Kathryn J. Coyne, David A. Hutchins, S. Craig Cary, Fred C. Dobbs

OES Faculty Publications

It is well established that cyst-forming phytoplankton species are transported in ships' ballast tanks. However, there is increasing evidence that other phytoplankton species which do not encyst are also capable of surviving ballast transit. These species have alternative modes of nutrition (hetero- or mixotrophy) and/or are able to survive long-term darkness. In our studies of no-ballast-on-board vessels arriving in the Great Lakes, we tested for the presence of the harmful algal bloom species Aureococcus anophagefferens (brown tide) in residual (i.e., unpumpable) ballast water using methods based on the PCR. During 2001, the brown tide organism was detected in 7 of …

Correction [To Maurakis And Grimes Article, V. 54, #3&4]

Virginia Journal of Science

This page is a correction to an article by Eugene G. Maurakis and David V. Grimes: Predicting Fish Species Diversity in Lotic Freshwaters of Greece, published in Virginia Journal of Science Volume 54, numbers 3 and 4. Amended table 2a owed to a printing corruption.

Subterranean Loss And Gain Of Water In Mountain Lake, Virginia: A Hydrologic Model, Martin Jansons, Bruce C. Parker, Jacob E. Waller

Virginia Journal of Science

Mountain Lake, Virginia is a small, unique, oligotrophic, subalpine ecosystem in the southern Appalachians. Previous studies have disclosed that this lake has manifested periodic prolonged low water levels during the several thousand years of its existence. The most recent low water level occurred during the drought years of 1999-2002. Measurements of lake level, precipitation, and other meteorological data including calculated evapotranspiration in the lake basin from 2/19/02 to 8/31/03 have enabled estimation of net subterranean water losses presumably through cracks between Clinch sandstone boulders and/or the recently discovered deep hole at the northwest end of Mountain Lake. These net losses …

Nest-Building And Spawning Behaviors In Nocomis Effusus (Actinopterygii: Cyprindae), Eugene G. Maurakis, George E. Maurakis

Virginia Journal of Science

Spawning behavior in Nocomis effusus is described from direct observations and review of videotapes made in Yellow Creek (Cumberland River drainage), Tennessee in 2003. Nest construction (i.e., excavating a concavity, forming a platform, and building a mound), and spawning behavior in N. effusus where a single breeding male excavates a pit and spawns with females on the upstream slope of his nest is like that described for Nocomis asper and Nocomis biguttatus. In digging a spawning pit, a male N. effusus reshapes and reorganizes substrate materials that results in spawning areas on the upstream slope of the nest composed …

Benthic Biological Monitoring Program Of The Elizabeth River Watershed (2003), Daniel M. Dauer

Elizabeth River Reports

Executive Summary

Macrobenthic communities of the Elizabeth River watershed have been quantitatively sampled since summer 1999. This report presents the data from the fifth year of sampling in 2003. The three objectives of the Benthic Biological Monitoring Program of the Elizabeth River watershed are: (1) To characterize the health of the tidal waters of the Elizabeth River watershed as indicated by the structure of the benthic communities. ( 2) To conduct trend analyses on long-term data at 14 fixed-point stations to relate temporal trends in the benthic communities to changes in water and/or sediment quality. Trend analyses will be updated …

A Brief Note On The Authorship Of The First Flora Virginica: Clayton, Gronovius, And Linnaeus, Joan K. Stemmler

Virginia Journal of Science

A modern Flora of Virginia will soon be published, providing an occasion to remember the publication of the first Flora Virginica in the 18th century and to establish the proper attribution of its authorship. Based on a manuscript by John Clayton, Flora Virginica was published in two parts in 1739 and 1743 by the Dutchman Johan Frederick Gronovius. Although both names are printed on the title page, the book is often cited with Gronovius listed as the author. This tradition, interpreted in modern understandings of plagiarism, has led to an assertion that Gronovius misrepresented Clayton's work as his own. This …

On Thacker's Biomedia (2004), Nicholas Ruiz Iii

Reconstruction: Studies in Contemporary Culture

[First paragraph]

Only we could have done it. The Code (DNA and its analogs, etc.) that we perhaps only narrate, never forgetting all of the fictions that narration portends, today consciously edits the text that evolution has edited unconsciously for eons. Thacker considers how humans -- perhaps little more than interactive Code, manipulate the Code -- with the technology of the Code. No other faction of Code has yet to make such heady ‘gains.’ Where posthumanity was always a literary endeavor, a literary bypass, out of instrumental science and into fictive states, it now is a technical endeavor, encompassing a …

Paradigm Shifts And New Worldviews: Kuhn, Laudan And Discovery In Molecular Biology, Priya Venkatesan

Reconstruction: Studies in Contemporary Culture

[Editors' Introduction]

The author poses an alternate set of ideas concerning paradigms, normal science, research traditions and scientific revolution on the basis of the unique and inherently distinctive development of molecular biology and genetics; for, a new set of conceptual tools concerning scientific progress are required for an adequate understanding of how biological processes were elucidated under the scientific auspices of the central dogma of the genetic code. This essay concentrates on a limited study of three aspects in genetics: the study of chromosome structure, dynamics and function, reverse transcriptases, and the discovery of RNA catalysts. In attempting to analyze …

A Phylogeny Of Genera Of The Fish Family Nemipteridae (Percoidei) Based On The Cytochrome B Gene, Denise R. Sliter

Biological Sciences Theses & Dissertations

The species level taxonomy of the Nemipteridae is well understood but existing morphological data is insufficient to hypothesize a phylogeny of the five genera of this family of percoid fishes. Furthermore, there are three distinct and widely disparate habitat requirements within nemipterids and little is known how these evolved. Species in the genera Pentapodus, Scaevius and Scolopsis are typically found around shallow reefs. Nemipterus species are also found in shallow-water, but they inhabit strictly soft sediment bottoms. Parascolopsis is the only deep-water genus and its species are also found over soft sediments. Complete cytochrome b gene sequences (1140 base …