Life Sciences Commons^™

The Role Of Placental Genes On Intellectual Disability And Developmental Delay, Maedot A. Yidenk

Dissertations, Theses, and Capstone Projects

The complex interaction between gene expressions and environmental factors plays a key role in the pathogenesis of various diseases, including neurodevelopmental disorders (Lenroot & Giedd, 2008). This study aimed to evaluate first, the magnitude of association between placental gene Methyl-CpG Binding Protein 2 (MeCP2) and intellectual disability (ID) in the offspring and second, the synergy between placental gene Forkhead box protein 1(FOXP1) and developmental delay (DD) in the offspring. We focused on assessing two specific paradigms, i) placental gene expressions of MeCP2 among children that have ID vs. children without ID; and ii) placental gene expression of …

Functional Connectivity Changes In The Default Mode Network In Moderate-To-Severe Traumatic Brain Injury, Emily J. Haight

Dissertations, Theses, and Capstone Projects

Traumatic brain injury (TBI) patients are known to have altered functional connectivity (FC), which has cognitive and behavioral significance and bears clinical implications. Previous literature has discovered a hyperconnectivity response to TBI, most notably in the default mode network (DMN). However, the exact pattern of changes in resting FC during the first year of recovery is unknown. We used resting-state functional magnetic resonance imaging to investigate longitudinal connectivity patterns in the DMN of 28 moderate-to-severe TBI patients as compared to 33 demographically matched healthy controls (HC). FC was assessed at 3, 6, and 12 months post-injury for patients using the …

Learning To Feel Safe: A Translational Study Of The Influence Of Safety Learning On Anxiety-Related Overgeneralized Fear, Hyein Cho

Dissertations, Theses, and Capstone Projects

Anxiety disorders are among the most common mental health diagnoses, affecting about a third of the population in their lifetime. However, approximately a third of individuals with anxiety do not respond to current treatment approaches, highlighting the need to identify additional potential therapeutic mechanisms. Safety learning is one such mechanism, but methodological challenges and a dearth of research have prevented the field from advancing the understanding of the role of safety learning in the etiology and remediation of anxiety disorders. Animal research, using single-cued safety learning paradigms, has yielded promising early findings, demonstrating that safety learning directly reduces anxiety-related behaviors …

Circuits Underlying Serotonin Mediated Sex Differences In Fear Learning, Rebecca Ravenelle

Dissertations, Theses, and Capstone Projects

Post-traumatic stress disorder (PTSD) is a trauma-related disorder characterized by intense fearful memory formation. Women are twice as likely as men to develop PTSD, indicating there may be sex differences in the underlying neural circuits. Given that serotonin (5-HT) dysfunction is implicated in PTSD, and 5-HT modulates fear learning, we investigated whether there are sex differences in the modulation of fear learning by 5-HT. We administered the selective serotonin reuptake inhibitor (SSRI) citalopram (20mg/kg or 10m/kg, i.p.) once to male and female mice prior to auditory fear conditioning and tested the effects on fear memory the next day. We found …

Water-Responsive, Peptide-Based Crystals, Roxana Piotrowska

Dissertations, Theses, and Capstone Projects

Water-responsive (WR) materials  that exert significant forces in response to changing hydration levels are receiving growing interest due to their potential applications, including use as actuators for energy harvesting devices, artificial muscles, and soft robotics. Reported examples include biological and synthetic materials with abilities to efficiently convert the chemical potential of water into mechanical actuations. However, these systems are typically complex, and consequently, their WR mechanisms are not well-understood thus preventing rational design and optimization. This thesis demonstrates the design and development of WR peptide crystals that mimic and enhance understanding of natural WR systems. The peptide crystals, with intrinsic …

Using Fnirs To Identify Brain Regions Involved In Emotional Face Processing In Infants At High Risk For Autism Spectrum Disorder, Christian Martinez

Dissertations, Theses, and Capstone Projects

Faces provide an abundance of salient information, and within a few hours of being born, infants already show preferential attention to faces and face-like stimuli. Autism spectrum disorder (ASD) is a developmental disorder consisting of social communication and interaction difficulties, and individuals with ASD show differences in the behavioral and neural processing of faces. Prospective studies with infants at high risk for ASD (HRA; by virtue of an older sibling with ASD) have begun to look at whether responses to faces could be an early marker of later ASD. Using functional near-infrared spectroscopy (fNIRS), the current study measured oxygenated hemoglobin …

Evolution And Development Of The Seed Coat In Gymnosperms, Cecilia Zumajo

Dissertations, Theses, and Capstone Projects

Gymnosperms and angiosperms are the most abundant plant lineages on earth and constitute a turning point in the evolution of plants because they are at the origin of the seed, a key morphological and developmental novelty in the evolution of land plant. Although the morphological variation of the seed, across seed plants, may on its own, explain the complexity of this structure, the origin, and evolution are even more, the understanding of these topics is still under discussion. Evidence shows that previous studies have often lacked the component of gene expression, particularly in species that are not model species. The …

The Effect Of Anticipatory Anxiety On Fear Extinction Learning, Daniela C. Echeverria

Dissertations, Theses, and Capstone Projects

Adaptive regulation of fear is dependent on successful fear extinction learning; therefore, investigating factors that both enhance and diminish fear extinction learning is a critical line of research. In the present study, we induce mild anticipatory anxiety during fear extinction learning in an attempt to modulate how participants extinguish fear memory. In the experiment, we apply a classic three-day fear learning protocol to both control participants (N = 20) and an experimental group (N = 20) with fear acquisition, fear extinction, and fear recovery phases; each phase is separated by a period of 24 hours and we use a skin …

Effects Of Working Memory Load On Ensemble Versus Individual Object Processing, Clark Moore

Dissertations, Theses, and Capstone Projects

Ensemble perception is the ability of the visual system to summarize object groups by their statistical properties. At a fundamental level, past studies show clearly that ensembles are perceived, and statistical information is sent to working memory such that a subject may report on the averages (Ariely, 2001; Brady and Alvarez, 2011). Studies show that subjects are capable of reporting ensemble statistics for large groups of objects with high accuracy, inferring that this process bypasses the capacity limitations of attention and working memory (Chong and Treisman, 2003; Baijal et al., 2013; Huang, 2015; Epstein and Emmanouil, 2017, 2021). However, few …

Genomic And Ecological Dimensions Of Malagasy Reptile And Amphibian Biodiversity, Arianna L. Kuhn

Dissertations, Theses, and Capstone Projects

A long history of isolation coupled with complex topographic and ecological landscapes makes Madagascar ideal for exploring the historical factors that have shaped patterns of population diversity and endemism. Many species-level studies have suggested Late Quaternary climate change may have influenced population dynamics in the tropics, but Madagascar’s ecologically unique biomes or individual species properties may have driven idiosyncratic responses to these shifts. Using community-scale population genetic data I implement a hierarchical approximate Bayesian computation (hABC) approach to evaluate the degree of synchronous population expansion during glacial cycles across herpetofaunal assemblages both within and across discrete biomes and taxonomic groups. …

Examining The Transient Neural Dynamics Underlying Working Memory Maintenance For Complex Visual Stimuli, Chelsea Reichert Plaska

Dissertations, Theses, and Capstone Projects

Working memory (WM) is the temporary storage of information to accomplish a future goal. The WM delay period is the time after encoding but before retrieval when information is being maintained, typically in the absence of relevant stimuli. Understanding how the brain supports maintenance during the delay period, and how neural activity and connectivity are related to memory is critical for advancing both basic knowledge as well as informing declines in memory and cognition related to neurodegenerative diseases and healthy aging. An open question in the field of WM research is how information is stored during this delay period. One …

Heparan Sulfate Proteoglycan Glypican‑1 And Pecam‑1 Cooperate In Shear‑Induced Endothelial Nitric Oxide Production, Anne Marie W. Bartosch, Rick Mathews, Marwa M. Mahmoud, Limary M. Cancel, Zahin S. Haq, John M. Tarbell

Publications and Research

This study aimed to clarify the role of glypican-1 and PECAM-1 in shear-induced nitric oxide production in endothelial cells. Atomic force microscopy pulling was used to apply force to glypican-1 and PECAM-1 on the surface of human umbilical vein endothelial cells and nitric oxide was measured using a fluorescent reporter dye. Glypican-1 pulling for 30 min stimulated nitric oxide production while PECAM-1 pulling did not. However, PECAM-1 downstream activation was necessary for the glypican-1 force-induced response. Glypican-1 knockout mice exhibited impaired flow-induced phosphorylation of eNOS without changes to PECAM-1 expression. A cooperation mechanism for the mechanotransduction of fluid shear stress …

Relationships Between Sports, Physical Activity Participation, And Phys-Ed Gpa: Results And Analyses From A National Sample Of Asian American Students, Howard Z. Zeng, Raymond E. Weston, Juan Battle

Publications and Research

Relationships among sports, physical activity (PA) participation, and educational outcomes have been studied in various venues, however, used a longitudinal method with a national sample of Asian-American High-School Students (AAHSS) was barely covered. This study employed the latest National High-School Longitudinal Study data (Participants, N = 950); hierarchical regression modeling and intersectionality theory examined, analyzed, and evaluated the relationships among sports, PA participation, and the outcomes on the physical education grade point average (Phys-Ed GPA). Moreover, the demographics factors impact on the participants' Phys-Ed GPA was also analyzed and evaluated. The primary results included: 1) the female students who participate …

Investigating Distribution Of Legionella Pneumophila In Urban And Suburban Watersheds, Azlan Maqbool

Student Theses

The presence of Legionella pneumophila was assessed using a cultivation-based approach in New York City waterways, a freshwater portion of the lower Hudson River Estuary near Kingston NY, and in urban and suburban street water. Legionella pneumophila was detected in 51% of brackish New York City Estuary samples, most with concentrations near minimum detection (=>1 organism/ mL). In contrast, it was detected in 22% of suburban freshwater Hudson River Estuary samples. Levels of the bacterium were found to be higher during wet weather compared to dry weather in the highly dense urban setting, but not in the less dense …

Monolingual And Bilingual Language Networks In Healthy Subjects Using Functional Mri And Graph Theory, Qiongge Li, Luca Pasquini, Gino Del Ferraro, Madeleine Gene, Kyung K. Peck, Hernán A. Makse, Andrei I. Holodny

Publications and Research

Bilingualism requires control of multiple language systems, and may lead to architectural differences in language networks obtained from clinical fMRI tasks. Emerging connectivity metrics such as k-core may capture these differences, highlighting crucial network components based on resiliency. We investigated the influence of bilingualism on clinical fMRI language tasks and characterized bilingual networks using connectivity metrics to provide a patient care benchmark. Sixteen right-handed subjects (mean age 42-years; nine males) without neurological history were included: eight native English-speaking monolinguals and eight native Spanish-speaking (L1) bilinguals with acquired English (L2). All subjects underwent fMRI with gold-standard clinical language tasks. Starting from …

Dopamine Neurons That Cotransmit Glutamate, From Synapses To Circuits To Behavior, Daniel Eskenazi, Lauren Malave, Susana Mingote, Leora Yetnikoff, Samira Ztaou, Vlad Velicu, Nao Chuhma

Publications and Research

Discovered just over 20 years ago, dopamine neurons have the ability to cotransmit both dopamine and glutamate. Yet, the functional roles of dopamine neuron glutamate cotransmission and their implications for therapeutic use are just emerging. This review article encompasses the current body of evidence investigating the functions of dopamine neurons of the ventral midbrain that cotransmit glutamate. Since its discovery in dopamine neuron cultures, further work in vivo confirmed dopamine neuron glutamate cotransmission across species. From there, growing interest has led to research related to neural functioning including roles in synaptic signaling, development, and behavior. Functional connectome mapping reveals robust …

The Paradox Of Retained Genetic Diversity Of Hippocampus Guttulatus In The Face Of Demographic Decline, Rupert Stacy, Jorge Palma, Miguel Correia, Anthony B. Wilson, José Pedro Andrade, Rita Castilho

Publications and Research

Genetic diversity is the raw foundation for evolutionary potential. When genetic diversity is significantly reduced, the risk of extinction is heightened considerably. The long-snouted seahorse (Hippocampus guttulatus) is one of two seahorse species occurring in the North-East Atlantic. The population living in the Ria Formosa (South Portugal) declined dramatically between 2001 and 2008, prompting fears of greatly reduced genetic diversity and reduced effective population size, hallmarks of a genetic bottleneck. This study tests these hypotheses using samples from eight microsatellite loci taken from 2001 and 2013, on either side of the 2008 decline. The data suggest that the population has …

Dom Degradation By Light And Microbes Along The Yukon River‑Coastal Ocean Continuum, Brice K. Grunert, Maria Tzortziou, Patrick Neale, Alana Menendez, Peter Hernes

Publications and Research

The Arctic is experiencing rapid warming, resulting in fundamental shifts in hydrologic connectivity and carbon cycling. Dissolved organic matter (DOM) is a significant component of the Arctic and global carbon cycle, and significant perturbations to DOM cycling are expected with Arctic warming. The impact of photochemical and microbial degradation, and their interactive effects, on DOM composition and remineralization have been documented in Arctic soils and rivers. However, the role of microbes, sunlight and their interactions on Arctic DOM alteration and remineralization in the coastal ocean has not been considered, particularly during the spring freshet when DOM loads are high, photoexposure …

Neurophysiological Changes After Paired Brain And Spinal Cord Stimulation Coupled With Locomotor Training In Human Spinal Cord Injury, Timothy S. Pulverenti, Morad Zaaya, Monika Grabowski, Ewelina Grabowski Grabowski, Md. Anamul Islam, Jeffrey Li, Lynda M. Murray, Maria Knikou

Publications and Research

Neurophysiological changes that involve activity-dependent neuroplasticity mechanisms via repeated stimulation and locomotor training are not commonly employed in research even though combination of interventions is a common clinical practice. In this randomized clinical trial, we established neurophysiological changes when transcranial magnetic stimulation (TMS) of the motor cortex was paired with transcutaneous thoracolumbar spinal (transspinal) stimulation in human spinal cord injury (SCI) delivered during locomotor training. We hypothesized that TMS delivered before transspinal (TMS-transspinal) stimulation promotes functional reorganization of spinal networks during stepping. In this protocol, TMS-induced corticospinal volleys arrive at the spinal cord at a sufficient time to interact with …

Intangible Cultural Heritage: A Benefit To Climate-Displaced And Host Communities, Gül Aktürk, Martha B. Lerski

Publications and Research

Climate change is borderless, and its impacts are not shared equally by all communities. It causes an imbalance between people by creating a more desirable living environment for some societies while erasing settlements and shelters of some others. Due to floods, sea level rise, destructive storms, drought, and slow-onset factors such as salinization of water and soil, people lose their lands, homes, and natural resources. Catastrophic events force people to move voluntarily or involuntarily. The relocation of communities is a debatable climate adaptation measure which requires utmost care with human rights, ethics, and psychological well-being of individuals upon the issues …

Uncovering Potential Biofilm Modulators, Liliana Margent

Theses and Dissertations

Biofilms have negative and positive impacts depending on the context they develop. In this work, I optimized a biofilm assay to evaluate the effect of three different types of compounds indole derivatives, 2,5 Diketopiperazines, and 12-hydroxystearic acid on the biofilm formation of E. coli.

Chemical Exposure From Manufactured Gas Plants: Public Health Risks?, Aneeza Hussain

Publications and Research

This project aims at identifying the chemicals and their risk factors to public health, which were found underneath Public Place, a brownfield next to the Gowanus Canal. The site is heavily contaminated with coal tar — a toxic chemical by-product of gas manufacturing, which happened at the site for 100 years until the gas plant closed down in the 1960s and the land was seized by the city. Recently, the city has planned to develop Public Place into “Gowanus Green” and which will be comprised of a school and low-income housing units on this site. The aim of this research …

The Effects Of Late Spring Frost On Forest And Landscape Health And Recovery Of The Black Rock Forest, New York, Caroline Eco, Oliver Imhans, Aaron Davitt, Andrew B. Reinmann

Publications and Research

Projected changes in climate are expected to increase the frequency of late spring frost events in the Northeast US. Such events can be harmful to trees because freezing temperatures that occur after leaf-out can damage or kill young leaves. The resultant defoliation typically forces a second flush of leaves, but delays canopy development, which in turn delays the onset of canopy carbon uptake and alters canopy thermal properties. In this study, we analyzed a recent freeze event that occurred on 8-9 May 2020 (DOY 129-130) at Black Rock Forest (BRF), which is in the Hudson Highlands of southeastern New York …

Some (Im)Material Girls, Living In (Im)Material Worlds, With Seeds, Stars, And Shit, Matthew Weiderspon

Theses and Dissertations

This writing situates material and gestural vocabularies cultivated in my artwork in relation to my lived experience; primarily my rural upbringing in Colorado. Scattered floor dispersals, calling sounds, and bodily movements desire reconsiderations of hope in precarity through a disorientation of place, association, scale, and language.

Mitochondrial Distribution Of Glycine Receptors In Motor Neuron Cell Lines, Katsiaryna Milashevich

Student Theses and Dissertations

Although non-essential, glycine plays an important role in major metabolic reactions and is most known for its anti-inflammatory effects. An accumulation of contemporary research has shown that glycine is able to stabilize membrane potential using glycine receptors at the cellular level and to protect mitochondrial function directly, whether it is from inflammation, heavy metal poisoning, or ischemia-induced neuroinflammation. In this research, the existence of a hypothetical mitochondrial glycine receptor is examined. Immunofluorescence imaging was used to examine the presence of the glycine receptor subunits alpha 1 and alpha 2 in both non- differentiated and differentiated neuroblastoma cell lines. The preliminary …

Species In Vernal Pools: Anova, Lisa Manne

Open Educational Resources

A one-way analysis of variance exercise using data on species diversities from vernal pools.Data are from vernal pools in Willowbrook Park (adjacent to College of Staten Island's campus) in spring.

The typical ANOVA gives a straightforward result (significant anova, easily-interpreted Tukey-Kramer analysis). This data set requires more nuanced interpretation, as the ANOVA is marginally significant, and Tukey-Kramer yields one significant pairwise comparison between groups. Relative lack of variation within groups explains this apparent enigma.

Determination Of Human Shedding Propensity Based On Str Results, Genevieve Trapani

Student Theses

Trace DNA evidence may be discovered at a crime scene after having been deposited by a person of interest via active or passive transfer. Based on previous studies, passive transfer of one’s DNA is influenced by their shedding propensity, or probability of depositing a detectable amount of DNA through touch. Determining the shedding propensity of a person of interest can aid in trace DNA interpretation in forensic casework. This study explored STR profile quality and the presence of a DNA mixture for different skin surface locations, including fingertips before and after handwashing. As expected, unwashed fingers showed a higher prevalence …

Biomedical Informatics Colloquium, Bio 4050, Course Outline, Eugenia G. Giannopoulou

Open Educational Resources

A seminar-based course that exposes students to current research topics in the fields of Bioinformatics and Medical Informatics. Weekly presentations by invited speakers and/or faculty introduce students to the broad diversity of research areas in both fields, and engages them in critical thinking and writing. Online lectures and reading activities will be given periodically.

Pre- And Post-Partum Observations Of Signature Whistle Characteristics Of The Bottlenose Dolphin (Tursiops Truncatus), Robert Dutchen

Theses and Dissertations

This study analyzes whistle usage in an Atlantic bottlenose dolphin during birth. Findings show the mother produces two predominant whistle contours. Congruities between the whistles were compared and showed that the type 1 contour bears structural similarity to the first component of the type 2 contour, indicating combinatorial whistle construction.

Influence Of Group Change On Scent Marking In A Wild Population Of Verreaux’S Sifaka (Propithecus Verreauxi), Julia C. Dickerson

Theses and Dissertations

This study analyzed scent marking rates of wild Verreaux’s sifaka during dispersals to investigate the impact of group changes on olfactory communication. Our results indicate that scent marking is affected by changes in group structure, but other methods of communication likely play a larger role in mediating group membership changes.