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Full-Text Articles in Life Sciences
Genomics Rna-Seq Analysis Part 1-Cyverse De, Fastqc, Trimmomatic (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Genomics Rna-Seq Analysis Part 1-Cyverse De, Fastqc, Trimmomatic (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Ray Enke Ph.D.
This in class exercise is designed to teach students about the basic features of CyVerse Discovery Environment (DE) as well as how to run FastQC and Trimmomatic steps of a general eukaryotic RNA-seq analysis pipeline using CyVerse DE apps.
Genomics Rna-Seq Analysis Part 2_ Kallisto Indexing And Quantification (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Genomics Rna-Seq Analysis Part 2_ Kallisto Indexing And Quantification (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Ray Enke Ph.D.
This in class exercise is a hands on activity designed to teach students about how to run Kallisto indexing quantification using CyVerse DE apps as part of a eukaryotic RNA-seq analysis pipeline.
Genomics Rna-Seq Analysis Part 3-Sleuth Data Visualization (Updated 11/17), Ray A. Enke, Scott Schumacker
Genomics Rna-Seq Analysis Part 3-Sleuth Data Visualization (Updated 11/17), Ray A. Enke, Scott Schumacker
Ray Enke Ph.D.
This in class exercise is a hands on activity designed to teach students about how to run Sleuth statistical modeling and RStudio data visualization package using Kallisto pseudoalignment output files as part of a eukaryotic RNA-seq analysis pipeline.