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Ray Enke Ph.D.

Selected Works

2017

Articles 1 - 6 of 6

Full-Text Articles in Life Sciences

Uploading Data To The Ncbi Sra Database, Ray A. Enke Jun 2017

Uploading Data To The Ncbi Sra Database, Ray A. Enke

Ray Enke Ph.D.

This in class exercise focuses on uploading FASTQ files sequencing data to the NCBI SRA database

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Using Rstudio For Manipulating And Visualizing Data (Updated 11/17), Ray A. Enke, Bejan A. Rasoul Dec 2016

Using Rstudio For Manipulating And Visualizing Data (Updated 11/17), Ray A. Enke, Bejan A. Rasoul

Ray Enke Ph.D.

This in class exercise is designed to teach novices about the basic features of R and RStudio using a non-biological data set called Gapminder. It is a modified version of a Data Carpentry Workshop that I use to teach programming to beginners.

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Whole Genome Dna Methylation Sequencing Of The Chicken Retina, Cornea And Brain, Isac Lee, Bejan A. Rasoul, Ashton S. Holub, Alannah Lejeune, Raymond A. Enke, Winston Timp Dec 2016

Whole Genome Dna Methylation Sequencing Of The Chicken Retina, Cornea And Brain, Isac Lee, Bejan A. Rasoul, Ashton S. Holub, Alannah Lejeune, Raymond A. Enke, Winston Timp

Ray Enke Ph.D.

No abstract provided.

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Genomics Rna-Seq Analysis Part 1-Cyverse De, Fastqc, Trimmomatic (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad Dec 2016

Genomics Rna-Seq Analysis Part 1-Cyverse De, Fastqc, Trimmomatic (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad

Ray Enke Ph.D.

This in class exercise is designed to teach students about the basic features of CyVerse Discovery Environment (DE) as well as how to run FastQC and Trimmomatic steps of a general eukaryotic RNA-seq analysis pipeline using CyVerse DE apps.

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Genomics Rna-Seq Analysis Part 2_ Kallisto Indexing And Quantification (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad Dec 2016

Genomics Rna-Seq Analysis Part 2_ Kallisto Indexing And Quantification (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad

Ray Enke Ph.D.

This in class exercise is a hands on activity designed to teach students about how to run Kallisto indexing quantification using CyVerse DE apps as part of a eukaryotic RNA-seq analysis pipeline.

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Genomics Rna-Seq Analysis Part 3-Sleuth Data Visualization (Updated 11/17), Ray A. Enke, Scott Schumacker Dec 2016

Genomics Rna-Seq Analysis Part 3-Sleuth Data Visualization (Updated 11/17), Ray A. Enke, Scott Schumacker

Ray Enke Ph.D.

This in class exercise is a hands on activity designed to teach students about how to run Sleuth statistical modeling and RStudio data visualization package using Kallisto pseudoalignment output files as part of a eukaryotic RNA-seq analysis pipeline.

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