Life Sciences Commons^™

Population Abundance And Growth Of Elk (Cervus Canadensis) In Western North Carolina, Jessica Braunstein

Doctoral Dissertations

In an effort to restore extirpated elk to their previous range, 52 elk were reintroduced to Great Smoky Mountains National Park (GRSM) in North Carolina during 2001 and 2002. Since their reintroduction, elk numbers have increased and their range has extended beyond GRSM boundaries. My primary research objectives included estimating population abundance, apparent survival, per capita recruitment, and population growth rate of elk in North Carolina. I used spatially explicit capture-recapture (SECR) models based on fecal DNA to identify individual elk and estimate population abundance and growth in the region. Technicians and I walked a series of transects throughout the …

Phenotyping Regression In A Female Mouse Model For Rett Syndrome Using Computational Neuroethology Tools, Michael J. Mykins

Doctoral Dissertations

Regression is defined as loss of acquired skills over time and is a key feature of many neurodevelopmental disorders such as Rett syndrome (RTT). RTT is caused by mutations in the X-linked gene Methyl CpG-Binding Protein 2 (MECP2) and is characterized by a period of typical development with subsequent regression of previously acquired motor and speech skills in girls. In human and animal models, it is clear syndromic phenotypes are dynamic over time but phenotyping regression over time in animal models has remained elusive. Lack of established timelines to study the molecular, cellular, and behavioral features of regression in female …

Advancing Natural White Oak (Quercus Alba.) Reproduction Through A Midstory Removal, Canaan Jeffrey Dugger

Masters Theses

In recent decades, there has been an alarming decline in white oak (Quercus alba.) regeneration and recruitment occurring within eastern forests. Historically, the frequency and the intensity of anthropogenic disturbances was dynamic over the landscape. However, over just the last century a major compositional shift has occurred from this change in disturbance regimes. Eastern forests are now promoting the regeneration of mesic species that obstruct white oaks’ ability to compete successfully and establish in the upper canopy.

The majority of successful white oak regeneration and recruitment is now occurring on the average to more xeric sites. Limited studies …

Multiphysics Modeling To Understand Microwave-Food Interactions In A Multi-Port Solid-State Microwave System., Kartik Verma

Masters Theses

Multiphysics modeling plays a crucial role in understanding the complexities of microwave-food interactions, especially in multi-port solid-state microwave systems where microwave parameters can be precisely and dynamically controlled. However, previous models using simplistic or manually measured oven geometries face challenges in accurately simulating the microwave heating process. This study first developed a robust 3-D scanning approach to capture precise geometric details of the oven cavity, incorporating them into multiphysics modeling for solid-state microwave heating. Furthermore, a quantitative validation approach was also developed to characterize modeling accuracy against experimental results. The results showed that multiphysics modeling with 3-D scanned geometry demonstrated …

Development Of Domestic Oleochemicals For Coating Applications, Caleb M. Metzcar

Masters Theses

The overall objective of the present work is to explore new applications of soybean oil based oleochemicals. Two main applications are developed; one using soybean oil, acrylic acid, and nonthermal plasma (NTP) treatment to dye para-aramids with cationic and non-ionic pigments, the other using fatty acids to synthesize waxes with bound quaternary ammonium compounds (QAC), an antimicrobial functional group, for fruit and vegetable postharvest coating. The color strength of the dyed fabric was quantified and the effect of the dyeing on material strength was evaluated to identify the optimal treatment condition. Antimicrobial waxes have been successfully developed that some structures …

Using Novel Phenotypes To Understand And Predict Fertility In Beef Cows, Cassidy Catrett

Masters Theses

Reproduction plays a major role in the production efficiency of livestock species. However, cow-centric reproductive traits are lowly heritable and are not expressed until later in an animal’s lifetime, making phenotypic selection ineffective at generating genetic gain. We can generate genetic progress by focusing selection on the genetic component of reproductive traits using Expected Progeny Differences (EPDs). We used the American Simmental Association’s performance and Total Herd Enrollment data, made up of 533,155 calving records from 303,158 females (132,403 cows and 170,755 heifers), 33,732 of which are genotyped, to develop two continuous and two discrete phenotypes focused on quantifying early …

Management And Investment: Two Pillars Of Automatic Milking Systems Efficiency, Abby N. Mccalmon

Masters Theses

Fetch cows, dairy cattle that do not voluntarily enter automated milking systems (AMS), increase labor costs, and decrease efficiency. The objective of this study was to describe fetch cows based on fetch lists and herd-management software data. This study was conducted on a commercial dairy farm (n = 510 cows) using 8 AMS from October 1, 2021, to May 10, 2022. Data were collected via PCDART, DairyComp, and a proprietary interface. Two fetch categories by cow, EverFetch (EF) and NeverFetch (NF), and three status groups by cow by day, True Fetch (on fetch list …

Pregnancy Influences On The Rumen Environment Of Angus Heifers Differing In Feed Efficiency, Miranda Gabrielle Martin

Masters Theses

With an expected increase in population by 2050, the demand for more animal protein will increase. To improve the sustainability of US cattle production, producers and researchers have historically focused on improving the feed efficiency of steers, producing a more marketable beef product. However, without a successful pregnancy, there would be no marketable animal to feed. The objective of this study was to examine the physiological changes that occur during pregnancy and their impact on the rumen microbial communities and the correlation to feed efficiency status in Angus heifers. Utilizing 17 cannulated Angus heifers, feed efficiency data was previously collected …

Black Bear Population Health Monitoring In The Southeast, Kathleen Elizabeth Riese

Masters Theses

Recent growth of the American black bear (Ursus americanus) population in the southeast raises concerns about the potential spread of density-dependent diseases among bears, particularly sarcoptic mange. However, research on the health of bears in this area is limited. We analyzed samples from 169 bears in the region. We performed Knotts tests, skin scrapes, fecal floats; Canine adenovirus (CAV), canine parvovirus (CPV), canine distemper virus (CDV), and Toxoplasma gondii serology, Trypanosoma, Rickettsia rickettsii, and apicomplexan PCR, and identified ecto- and endoparasites found grossly or histologically. We found that 69% (63 of 91) had microfilaria; genetic analysis identified …

A Watershed Prioritization Model For Community-Centered Riparian Forest Restoration In Tennessee, Madison Johnson

Masters Theses

Riparian forests are unique ecosystems that act as transitional areas between land and water that are a vital part of a healthy and functional stream ecosystem. Due to the rapidly changing landscape, riparian forests are increasingly threatened by urban development, agriculture, and invasive species, which contributes to a trend of degrading water quality in Tennessee. To address declining riparian forest quality in the face of land-use changes, the purpose of this study was to develop a simple watershed prioritization model that identifies areas that are highly susceptible to poor water quality, and where riparian plantings would be most beneficial. This …

Aspects Of Distribution, Abundance, Habitat, And Life History Of The Caddo Madtom (Noturus Taylori), A Narrow Endemic Of The Ouachita Highlands, Brittany L. Mccall, Brook L. Fluker

Southeastern Fishes Council Proceedings

The Caddo Madtom, Noturus taylori, is a small catfish endemic to the Ouachita Mountain ecoregion in Arkansas, with habitat altered by land use practices and reservoir dams. We examined aspects of distribution, abundance, habitat, and life history of N. taylori during seasonal sampling from winter 2016 through fall 2017. Our sampling data were concordant with previous studies that suggested N. taylori is more widespread and has higher catch per unit effort in the Caddo River drainage when compared to the upper Ouachita River drainage. We did not detect N. taylori in the Little Missouri River drainage, where it is …

Multidimensional Investigation Of Tennessee’S Urban Forest, Jillian L. Gorrell

Doctoral Dissertations

Preserving existing trees in urban areas and properly cultivating urban forest conservation and management opportunities is valuable to the ever-growing urban environment and necessary for creating optimal experiences and educational tools to meet the needs of increasing urban populations. This dissertation contains studies investigating several facets of the urban forest, including environmental effects of deforestation and urbanization, tree equity, and urban forest facility management and accessibility. Community education and outreach at arboreta about the importance of the tree canopy can help promote environmental stewardship. A digital questionnaire was electronically distributed to representatives of arboreta certified through the Tennessee Division of …

Increasing Productivity And Biodiversity Of Tall Fescue Swards By Intercropping Cool And Warm-Season Forage Species, Michael Dereck Corbin

Doctoral Dissertations

Mixed pastures are known to produce greater biomass yields and higher nutritive value than monocultures. Intercropping biologically N fixating legumes, along with the use of intercropping warm-season annual grasses, such as crabgrass [Digitaria ciliaris Retz.], provides the potential to aid tall fescue [Schedonorus arundinaceus (Schreb.) Dumort.] productivity. To determine the benefits of intercropping species into tall fescue forage systems in the Southeastern U.S., two studies were developed. The first study consisted of 9 tall fescue paddocks, in which 3 paddocks contained red clover (Trifolium pratense L. [TRC]) mixed with tall fescue, 3 paddocks contained sunn …

Application Of Machine Learning Approaches To Empower Drug Development, Yue Shen

Doctoral Dissertations

Human health, one of the major topics in Life Science, is facing intensified challenges, including cancer, pandemic outbreaks, and antimicrobial resistance. Thus, new medicines with unique advantages, including peptide-based vaccines and permeable small molecule antimicrobials, are in urgent need. However, the drug development process is long, complex, and risky with no guarantee of success. Also, the improvements in techniques applied in genomics, proteomics, computational biology, and clinical trials significantly increase the data complexity and volume, which imposes higher requirements on the drug development pipeline. In recent years, machine learning (ML) methods were employed to support drug development in various aspects …

Methods To Hasten Zoysiagrass Establishment From Sprigs, Tyler Carr

Doctoral Dissertations

Zoysiagrasses (Zoysia spp. Willd.) are commonly used on golf course fairways and tees in addition to residential and commercial lawns due to lower input requirements relative to bermudagrass (Cynodon spp.). This has led to increased interest in using zoysiagrass for golf course putting greens; however, zoysiagrass establishment from sprigs is prolonged compared to bermudagrass. A series of experiments were conducted in glasshouses in Knoxville, TN in 2022 to evaluate the effects of environmental conditions and management practices on the establishment of Prizm zoysiagrass from sprigs. To determine the optimal soil temperature for Prizm zoysiagrass establishment, sprigs were exposed …

Effects Of A Movement-Based Curriculum On The Motor And Cognitive Development Of Preschool-Aged Children, Aaron Wood

Doctoral Dissertations

Physical activity has been shown to be positively associated with improved motor skill and cognitive development in young children. Intervention designs are often constructed without focus on interrelatedness of the development of motor and cognitive self-regulatory skills. Purpose: To investigate the impact of a movement-based curriculum designed to integrate both motor skill and cognitive development in preschool children. Methods: Preschool-aged children [n=34; intervention group (n=28); control group (n=6)] participated in the study. Locomotor and object control motor skills were assessed via the Test of Gross Motor Development – 3rd Edition. Cognitive self-regulation (attention, working memory, and inhibition) was assessed via …

Induction And Evasion Of Neutrophil Extracellular Traps By Campylobacter Jejuni And Its Implication In Disease, Sean M. Callahan

Doctoral Dissertations

Campylobacteriosis, the foodborne disease caused by Campylobacter spp., infects one out of 10 individuals every year. C. jejuni accounts for 90% of these infections resulting in numerous postinfectious disorders including the development of colorectal cancer, Guillain-Barré syndrome, irritable bowel syndrome, and reactive arthritis. Despite its large impact on human health, the host immune response to the bacterium is largely uncharacterized. Chapter two of this dissertation addresses the development of neutrophil extracellular traps (NETs) within human and ferret campylobacteriosis. We observed NET-associated proteins increase in the feces of C. jejuni-infected patients and that in vitro C. jejuni induces NETs, which …

Investigating Drivers Of Algal Bloom Succession In Lake Erie, Brittany Zepernick

Doctoral Dissertations

Harmful Algal Blooms (HABs) are algae undergoing prolific, unregulated growth. A well-documented HAB taxa is the cyanobacterium Microcystis spp., which induces anthropogenic, ecological, and economic consequences due to the production of toxins and biomass which results in lake hypoxia. Microcystis spp. blooms are globally distributed in freshwater systems, with climate change and the aquatic continuum serving to further exacerbate bloom distribution, duration, and frequency. Thus, there is a need to elucidate the factors driving the ecological success of Microcystis spp., and the ecological “failures” of their competitors, such as diatoms. In Lake Erie, a seasonal pattern of algal bloom succession …

Cell-Free Metabolic Engineering Strategies For Accelerated Biomanufacturing, Jaime Lorenzo N. Dinglasan

Doctoral Dissertations

Biomanufacturing propels the bioeconomy. Accelerating bioeconomic growth thus requires the expedited development of biomanufacturing processes that can expand the current bioproduct portfolio. Lysate-based cell-free systems provide unique advantages for simplified metabolic pathway construction. Their central metabolic pathways and transcriptional-translational (TX-TL) machineries are free from genome regulation and are amenable to direct manipulation, enabling the streamlined construction of biomanufacturing processes. While their utility as prototyping platforms for accelerating cellular metabolic engineering has been demonstrated, the potential to rapidly build commercial “cell-free factories” capable of sophisticated bioconversion has not been fully realized. Lysates with high-yield pathways are projected to enable commercialized cell-free …

Understanding Host-Microbe Interactions In Maize Kernel And Sweetpotato Leaf Metagenomic Profiles., Alison K. Adams

Doctoral Dissertations

Functional and quantitative metagenomic profiling remains challenging and limits our understanding of host-microbe interactions. This body of work aims to mediate these challenges by using a novel quantitative reduced representation sequencing strategy (OmeSeq-qRRS), development of a fully automated software for quantitative metagenomic/microbiome profiling (Qmatey: quantitative metagenomic alignment and taxonomic identification using exact-matching) and implementing these tools for understanding plant-microbe-pathogen interactions in maize and sweetpotato. The next generation sequencing-based OmeSeq-qRRS leverages the strengths of shotgun whole genome sequencing and costs lower that the more affordable amplicon sequencing method. The novel FASTQ data compression/indexing and enhanced-multithreading of the MegaBLAST in Qmatey allows …

Computational Analysis Of Microbial Sequence Data Using Statistics And Machine Learning, Zhixiu Lu

Doctoral Dissertations

Since the discovery of the double helix of DNA in 1953, modern molecular biology has opened the door to a better understanding of how genes control chemical processes within cells, including protein synthesis. Although we are still far from claiming a complete understanding, recent advances in sequencing technologies, increased computational capacity, and more sophisticated computational methods have allowed the development of various new applications that provide further insight into DNA sequence data and how the information they encode impacts living organisms and their environment. Sequencing data can now be used to start identifying the relationships between microorganisms, where they live, …

Airborne Transmission Of Pathogens Emerging In The Poultry Industry, Xuan Dung Nguyen

Doctoral Dissertations

Poultry houses might have high levels of airborne pathogens, including Escherichia coli (E. coli) and avian influenza (AI), which may be transmitted through the air and pose risks of infection. The objective of the dissertation is to provide an insightful understanding the of airborne transmission of E. coli and AI which were attached to poultry dust particles.

Chapter I and VI summarized background, gap in knowledge, and discussed the limitations and implications of the study.

Chapter II compared the efficiency of Andersen six-stage impactor, all-glass impinger, and ACD-200 Bobcat, in collecting airborne E. coli carried by dust particles. The results …

The Development Of Tailored Amphiphilic Copolymers For Detergent-Free Integral Membrane Protein Extraction, Cameron Edward Workman

Doctoral Dissertations

Integral membrane proteins are prolific targets for the design, development, and delivery of pharmaceuticals. In fact, over 60% of all currently available drugs target these proteins to accomplish their therapeutic effect. However, integral membrane proteins remain the least characterized class of all proteins, accounting for only ~2% of all solved protein structures. One of the primary reasons for this low number of solved protein structures is that many membrane proteins lose their native conformation when extracted using conventional methods (e.g. detergents), convoluting accurate structure determination. In contrast, amphiphilic styrene-maleic acid copolymers (SMAs) were recently discovered to readily isolate membrane proteins …

Role Of Kinases And An Epigenetically Regulated Gene In Soybean Cyst Nematode Resistance, Tracy Elizabeth Hawk

Doctoral Dissertations

Soybean cyst nematode (SCN) is the most devastating and economically important pathogen of soybean across the United States and globally. The current primary control for SCN is with the use of resistant cultivars, however, SCN populations are shifting to overcome most common sources of soybean resistance. This research was conducted to identify novel sources of genetic resistance to SCN. First, I functionally characterized two protein kinase hub genes whose function are predicted to be essential for mediating soybean susceptibility to SCN. I generated kinase-dead variants by mutating two amino acids required for the kinase enzymatic activity. Overexpression of the kinase-dead …

Unraveling Plant-Microbe-Microbe Interactions: Host And Microbial Colonization Determinants Across Experimental Scales, Bridget O'Banion

Doctoral Dissertations

Plant microbiomes are assembled and modified through a complex milieu of biotic and abiotic factors. Despite dynamic and fluctuating contributing variables, specific host and microbial mechanisms are likely important mediators of interactions. We combine information from large-scale datasets across diverse plant hosts with experimental genetic manipulation assays in model Arabidopsis seedlings to converge on a conserved role for metabolite production and transport in mediating host-microbe interactions. Applying a diverse set of analytical tools to microbial communities at various complexity levels will advance our knowledge of the scalability of observed phenotypes and, ultimately, help to decipher the mechanisms dictating plant–microbe interactions …

Evaluation Of Treatment Options And Investigation Of Pathogenesis Of Chytridiomycosis In North American Salamanders, Anastasia Elaine Towe

Doctoral Dissertations

Chytridiomycosis, a cutaneous fungal disease caused by two related fungi, Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans (Bsal), is a major cause of amphibian population declines worldwide. Bd has a broad distribution, covering every continent except for Antarctica. Meanwhile, Bsal is currently restricted to Europe and Asia. Treatment options for both Bd and Bsal remain a major area of concern for wild populations. Recently, implants for long-term, parenteral antifungal drug administration have shown some promise in fungal diseases in wildlife. We investigated the safety and efficacy of an intracoelomic implant of the antifungal drug terbinafine in greater …

Brown People, Green Spaces: Colonial Imaginaries And The Whiteness Of Nature, Jeffrey Michael Desalu

Masters Theses

For several years, conversations about the absence of racial and ethnic diversity in ecology and evolutionary biology (EEB) and the conservation movement have been growing in scope. Critics argue that the overwhelmingly white demography of EEB departments and conservation organizations deprive both of a necessary diversity of perspective and, more importantly, deprive people of color and other minoritized groups of a voice in the study of and advocacy for their lived environments. Here, I situate the current conversations in historical context, arguing that the current lack of diversity is in part a reflection of the material and ideological bases for …

Dental Calculus: Future In Forensics, Emily Elgin

Chancellor’s Honors Program Projects

No abstract provided.

Isolating And Characterizing Lipid Degrading Microbes From Human Decomposition Soils, Brooke Amara Talley, Allison R. Mason, Jennifer Debruyn

Chancellor’s Honors Program Projects

No abstract provided.

A Field Guide To Foodways And Foraging In Southern Appalachia, Aeryn Lorraine Longuevan

Chancellor’s Honors Program Projects

No abstract provided.