Life Sciences Commons^™

Biological Pathway Involvement In Melanoma Heterogeneity And Drug-Induced Resistance, Sarah V. Pack

STAR Program Research Presentations

Tumors develop resistance to numerous drug therapies, and this remains a major obstacle in treating many types of non-surgical cancers. Melanoma provides a good model system for studying drug resistance in cancer due to its high propensity to incur resistance after a significant initial response to a drug. Genes that are highly expressed in melanoma cancer cells have been studied, but in order to further understand the collective function of these highly expressed genes we must analyze gene sets, or pathways. A single gene’s function is rarely independent of other genes, and pathway analysis takes this into account.

Our objective …

Abundance And Community Composition Of Invasive Intertidal Watersipora On The San Francisco Bay Area Outer Coast, Kevin Myron, Meredtyh Duncan, Jaden Stone, C. Sarah Cohen

STAR Program Research Presentations

Invasive species can lead to serious ecological changes. The San Francisco Bay area is one of the most invaded areas in the world due to the commercial shipping industry and recreational water vessels. While the intertidal is not widely invaded, the harbors and docks are. One exception to this is the invasive, colonial filter-feeding bryozoan Watersipora, which has been found at various rocky outer coast sites. Further investigation into how the sites are invaded by this organism and their impact on native species must be carried out. In this project, at four intertidal sites around the SF Bay outflow, we …

Maternal Diet During Lactation And Breast-Feeding Practices Have Synergistic Association With Child Diet At 6 Years, Jacob P. Beckerman, Emily Slade, Alison K. Ventura

Kinesiology and Public Health

Objective: Children breast-fed during infancy consume more fruits and vegetables than formula-fed children. This pattern is likely due, in part, to infant learning from flavours of the mother’s diet transmitted through breast milk, but more research is needed to understand associations between early flavour exposures and later dietary patterns. We examined whether breast-feeding and maternal fruit and vegetable consumption during nursing were synergistically associated with higher child fruit and vegetable consumption.

Design: Prospective cohort study of breast-feeding duration, maternal diet postpartum and child diet. Complete breast-feeding and maternal diet data were available for 1396 mother–child dyads; multiple imputation was used …

The Effects Of Edaphic And Climatic Factors On Secondary Lichen Chemistry: A Case Study Using Saxicolous Lichens, Alexander Paukov, Anzhelika Teptina, Maria Morozova, Ekaterina Kruglova, Sergio E. Favero-Longo, Cora Bishop, Nishanti Rajakaruna

Biological Sciences

Diversity of secondary lichen metabolites and their relationship to substrate and environmental parameters were studied in saxicolous lichens in the Middle and South Urals of Russia. Atranorin, usnic acid, gyrophoric acid, zeorin, norstictic acid, antraquinones and stictic acid were found in 73, 42, 41, 37, 36, 35 and 32 species, respectively, of 543 taxa collected. One hundred and ninety six species (i.e., 36% of total species documented) contained no secondary metabolites. Spectra of secondary metabolites of crustose lichens varied on different rock types, while in fruticose and foliose groups only those species without lichen acids were dependent on the substrate …

Tropic Transfer And Bioaccumulation Of Lead Along Soil-Plant-Aphid-Ladybird Food Chain, Mohod Irfan Naikoo, Mudasir Ifran Dar, Fareed Ahmad Khan, Fariha Raghib, N. Rajakaruna

Biological Sciences

Lead (Pb) contamination of agroecosystems is a serious issue as Pb is a persistent pollutant that is retained in soil for long, causing toxicities to organisms. This study examines biotransfer of Pb from soils treated with different concentrations of Pb through a broad bean (Vicia faba L.)–aphid (Aphis fabae Scop.)–ladybird (Coccinella transversalis Fabricius) food chain and its consequent inference for natural biological control, the ladybird. The soil was amended with Pb at the rates of 0, 25, 50, 75 and 100 mg kg⁻¹(w/w). The amount of Pb in plant, aphid and ladybird increased in a dose-dependent manner …

Influence Of Soil Water Content And Soil Amendments On Trace Metal Release And Seedling Growth In Serpentine Soil, Viraj Gunarathne, Nishanta Rajakaruna, Udaya Gunarathne, Jayanta Kumar Biswas, Zach A. Raposo, Meththika Vithanage

Biological Sciences

This study was conducted to evaluate the synergistic effects of organic amendments and soil water status on trace metal release from serpentine soil.

Exploring Correlates Of Infant Clarity Of Cues During Early Feeding Interactions, Alison K. Ventura, Sierra Sheeper, Jordyn Levy

Kinesiology and Public Health

Background Recommendations aimed at reducing infants’ risk for rapid weight gain primarily focus on promoting caregivers’ use of responsive feeding practices and styles. These recommendations are grounded in the belief that infants will effectively signal hunger and satiation to their caregivers. To date, few studies have explored how variability in infants’ communication of hunger and satiation may contribute to feeding interactions.

Objective Our aim was to explore variability in, and correlates of, infant clarity of cues during feeding interactions.

Design This was a cross-sectional study.

Participants/setting Mother-infant dyads (n = 86) were video-recorded during a typical feeding interaction within laboratory-based …

Effects Of Varying Doses Of Oral Bisphenol A Consumption On Type 2 Diabetes Risk Markers In Healthy Adults, Todd Hagobian, Alyssa Bird, Sean Stanelle, Dana Williams, Andrew Schaffner, Suzanne Phelan

Kinesiology and Public Health

Objective

To determine the effects of varying doses of orally administered BPA on indices of glucose metabolism.

Methods

Eleven college students (21.0 ± 0.8 years; 24.2 ± 3.9 kg/m²) were randomized in a double-blinded, crossover fashion separated by >1 week to placebo (PL), deuterated BPA at 4 µg/kg body weight (BPA-4), and deuterated BPA at 50 µg/kg body weight (BPA-50). Total BPA, glucose, insulin, and C-peptide were assessed at baseline, minutes 15, 30, 45, 60, and every 30 minutes for 2 hours in response to a glucose tolerance test.

Results

There was a significant condition × time interaction …

Fabrication Of Miniaturized Paper-Based Microfluidic Devices (Micropads), E. Brandon Strong, Spencer A. Schultz, Andres Martinez, Nathaniel W. Martinez

Chemistry and Biochemistry

Microfluidic paper-based analytical devices (microPADs) are emerging as cost-effective and portable platforms for point-of-care assays. A fundamental limitation of microPAD fabrication is the imprecise nature of most methods for patterning paper. The present work demonstrates that paper patterned via wax printing can be miniaturized by treating it with periodate to produce higher-resolution, high-fidelity microPADs. The optimal miniaturization parameters were determined by immersing microPADs in various concentrations of aqueous sodium periodate (NaIO₄) for varying lengths of time. This treatment miniaturized microPADs by up to 80% in surface area, depending on the concentration of periodate and length of the reaction …

An Albino Mutant In Brassica Rapa Maps To The Pdx2 Locus On Chromosome 10, Beatriz M. Garcia

STAR Program Research Presentations

We have identified an albino mutant in the plant Brassica rapa. This recessive mutation could provide insights into the photosynthetic pathways of all plants. Previously the mutation was mapped to chromosome 10 of Brassica rapa. To narrow down the chromosomal region containing the albino mutation, we grew a segregating population of plants. DNA was extracted from albino and wildtype (green) plants and genotyped using PCR markers on chromosome 10. The genotype detected using the INDEL2 marker perfectly predicted whether a plant was albino or WT. This indicates that the INDEL2 marker is tightly linked to the albino mutation. INDEL2 is …

An Albino Mutant In Brassica Rapa Maps To The Pdx2 Locus On Chromosome 10, Cezar L. Sanchez, Beatriz M. Garcia, Edward Himelblau, Nick Diaz

STAR Program Research Presentations

We have identified an albino mutant in the plant Brassica rapa. This recessive mutation could provide insights into the photosynthetic pathways of all plants. Previously the mutation was mapped to chromosome 10 of Brassica rapa. To narrow down the chromosomal region containing the albino mutation, we grew a segregating population of plants. DNA was extracted from albino and wildtype (green) plants and genotyped using PCR markers on chromosome 10. The genotype detected using the INDEL2 marker perfectly predicted whether a plant was albino or WT. This indicates that the INDEL2 marker is tightly linked to the albino mutation. INDEL2 is …

Cichlid Size Vs Flow Rate, Amy E. Naumovski

STAR Program Research Presentations

Cichlids are a diverse group of fish that are known for their prenatal and postnatal care of their eggs and frys (baby fish). This unique characteristic creates a limitation on the amount of eggs a cichlid can lay and protect, which is particulalry effected by the size of the eggs. Cichlids have a large variance in their egg size, which correlates to a large variance in their fry size. This project explores the trade offs cichlids make in egg size and fry size by specifically testing the ability of varying sized cichlids to swim in different flow rates. This could …

Comparing Orientation Behavior And Prey Preference Of Leptasterias Spp. Between Microhabitats, Jenna C. Sanders, Margaret W. Johnson, C Sarah Cohen

STAR Program Research Presentations

Leptasterias spp. is a species complex of small, six rayed, predatory sea stars that inhabit rocky intertidal communities along the Pacific coast of North America. A developmental mode of brooding their young, rather than broadcasting for planktonic development, limits dispersal away from the natal area, and may also result in fine scale local adaptation of populations. Local adaptation may lead to morphological and behavioral differences among populations, specifically towards the most available prey. Within the rocky intertidalthere are zones of high and low wave impact which create microhabitats with their own selective forces. In areas of high wave impact, stars …

Dataset For Pilot Randomized Trial To Reduce Urinary Bisphenols In Women With Obesity, Todd Hagobian, Zoe Delli-Bovi, Adrian Mercado, Alyssa Bird, Megan Guy, Suzanne Phelan

Kinesiology and Public Health

Background: Bisphenol exposure is widespread and correlated with diabetes and cardiovascular disease. Previous intervention studies have effectively lowered bisphenol exposure among women of normal-weight. The purpose of this pilot study was to test the hypothesis that a 3-week bisphenol intervention would decrease urinary bisphenol A (BPA) bisphenol S (BPS), and bisphenol F (BPF) in women with obesity.

Methods: Thirty women with obesity (31.1 ± 5.6 kg/m², 21.1 ± 3.1 yrs) were randomly assigned to an intervention or control. The intervention included weekly face-to-face meetings to reduce bisphenol exposures from food, cosmetics, and packaged products. Fasting urinary …

Long-Term Phytoremediating Abilities Of Dalbergia Sissoo Roxb. (Fabaceae), Saqib Ul Kalam, Fauzia Naushin, Fareed Ahmad Khan, Nishanta Rajakaruna

Biological Sciences

The boom of tanneries in north India has converted the river Ganga into a waste dumping stream. The tanneries discharge their heavy metal-rich effluents into the river. Tissues of two-year-old tree saplings of Dalbergia sissoo, soil sediments and river water samples were collected from three sites along the river Ganga at Jajmau, Kanpur. Site-1 was located 1 km upstream from the point of discharge of the effluents of the tanneries, Site-2 was close to the source point, and Site-3 was about 1 km downstream from the source point. Accumulation of Cu, Cr and Ni in leaves, bark, wood growth rings, …

Predictors Of Resilience Among Infants At Risk For Rapid Weight Gain, Alison K. Ventura, Kristen Thompson

Kinesiology and Public Health

Objective: The study objective was to investigate factors associated with resilience to rapid weight gain (RWG) among predominantly bottle-fed infants.

Methods: Data came from 1,353 mothers who participated in the Infant Feeding Practices Study 2. Mothers completed a prenatal questionnaire and monthly surveys of infant feeding and growth between birth and 12 months. Infants were classified as resilient if they were predominantly bottle fed but did not exhibit RWG between birth and the latter half of infancy (≥ +0.67 change in weight-for-age z score).

Results: Thirty-five percent of the sample (n = 467) was predominantly bottle fed but did …

Method Development For Structural Assessment Of Nanolipoprotein Particles With And Without Cross-Linked Lipids, Emma J. Mullen, Wei He, Sean Gilmore, Matthias Frank, Matthew Coleman, Megan Shelby

STAR Program Research Presentations

Membrane proteins make up approximately 30% of the cellular proteome and account for over 60% of pharmaceutical targets.1 Determining the structures of this class of proteins is critical to our understanding of disease states and will advance rational drug design. But membrane proteins have limited solubility, rarely form large crystals that diffract well, and often misfold outside of a bilayer, hindering crystallographic studies.1 Nanolipoprotein particles (NLPs) have arisen as a platform to readily solubilize membrane proteins while mimicking a native lipid environment. NLPs consist of a discoidal phospholipid bilayer encircled by an apolipoprotein belt. In an effort to optimize and …

Climactic Niche Model For Overwintering Monarch Butterflies In A Topographically Complex Region Of California, Ashley Fisher, Kiana Saniee, Charis Van Der Heide, Jessica Griffiths, Daniel Meade, Francis X. Villablanca

Biological Sciences

We use climatic conditions that are associated with known monarch butterfly overwintering groves in California to build a Maxent model, and focus on the fine scale probability of overwintering grove occurrence in a topographically complex region of the state (Santa Barbara County). Grove locations are known from recent and historical surveys and a long-term citizen science database. The climatic niche model performs well, predicting that overwintering habitat is most likely to occur along the coast and at low elevations, as shown by empirical data. We then use climatic variables in conjunction with climate change scenarios to model the future location …

Intracanopy Adjustment Of Leaf-Level Thermal Tolerance Is Associated With Microclimatic Variation Across The Canopy Of A Desert Tree (Acacia Papyrocarpa), Ellen M. Curtis, Charles A. Knight, Andrea Leigh

Biological Sciences

Tree crowns are spatially heterogeneous, sometimes resulting in significant variation in microclimate across the canopy, particularly with respect to temperature. Yet it is not known whether such localised temperature variation equates to intracanopy variation in leaf-level physiological thermal tolerance. Here, we studied whether microclimate variation across the canopy of a dominant desert tree equated to localised variation in leaf thermal thresholds (T₅₀) among four canopy positions: upper south, upper north, lower south, lower north. Principal component analysis was used to generate a composite climatic stress variable (C_STRESS) from canopy temperature, vapour pressure deficit, and …

Effects Of Opaque, Weighted Bottles On Maternal Sensitivity And Infant Intake, Alison K. Ventura, Alexandra Hernandez

Kinesiology and Public Health

Caregivers' abilities to assess how much is in the bottle may lead to encouragement of infant bottle emptying and overfeeding. The present study assessed whether use of opaque, weighted bottles (as compared with conventional, clear bottles) improves feeding outcomes. Mothers with infants <32 weeks of age (n = 76) were assessed on two separate days. Mothers fed their infants from an opaque, weighted bottle on 1 day and a clear bottle on the other; conditions were counterbalanced. Blinded raters certified in the Nursing Child Assessment Feeding Scale scored all videos to determine maternal sensitivity. Infant intake was assessed by weighing the bottle before and …

Adapting Cell-Free Protein Synthesis As A Platform Technology For Education, Grace W. Chu, Max Z. Levine, Nicole E. Gregorio, Javin P. Oza

STAR Program Research Presentations

Cell-free protein synthesis (CFPS) has emerged as an enabling biotechnology for research and biomanufacturing as it allows for the production of protein without the need for a living cell. Applications of CFPS include the construction of libraries for functional genomics and structural biology, the production of personalized medicine, and the expression of virus-like particles. The absence of a cell wall provides an open platform for direct manipulation of the reaction conditions and biological machinery. This project focuses on adapting the CFPS biotechnology to the classroom, making a hands-on bioengineering approach to learning protein synthesis accessible to students grades K-16 through …

The Cal Poly Basic Needs Task Force Report - Fall 2018, Aydin Nazmi

Food Science and Nutrition

No abstract provided.

‘Ripple’ Effect On Infant Zbmi Trajectory Of An Internet-Based Weight Loss Program For Low-Income Postpartum Women, S. Phelan, T. A. Hagobian, A. Ventura, A. Brannen, K. Erickson-Hatley, A. Schaffner, K. Muñoz-Christian, S. Mercado, D. F. Tate

Kinesiology and Public Health

Background: Weight loss interventions can have positive ‘ripple’ effects on untreated partners in the home, but ripple effects on infants are unknown.

Objective: To examine whether a 12-month internet-based weight loss intervention for postpartum mothers had a positive ripple effect on participants’ infants.

Methods: A 12-month cluster randomized, assessor-blind, clinical trial enrolling 371 postpartum women at 12 Women, Infants, Children clinics in CA. Clinics were randomized to standardWomen, Infants, Children or an internet-based weight loss intervention for mothers.

Results: A total of 333 of the 371 (89.8%) mothers assented for infant participation. Infants were 5.3 ± 3.2 months; 75.9% were …

Comparison Of An Endangered Species’ Seed Bank Before And After Ungulate Removal, Melanie K. Phillips, Kathryn Mceachern

STAR Program Research Presentations

The purpose of this study was to assess the impact of the removal of ungulates on the soil seed bank of the endemic Santa Rosa Island manzanita (Arctostaphylos confertiflora). A. confertiflora was trampled and browsed by non-native ungulates between the years 1850 and 2011 which reduced its ability to produce seeds.This species is an obligate seeder, meaning that sprouting from seeds in the soil is its only method of reproduction. Due in part to the lack of its soil seed bank, this species was federally listed as endangered by the US Fish and Wildlife Service in 1997. In order to …

Scale-Invariant Geometric Data Analysis (Sigda), Marina Girgis, Max Robinson

STAR Program Research Presentations

The purpose of this research is to introduce a new data analysis method called Scale Invariant Geometric Data Analysis (SIGDA). SIGDA has been shown to be more informative than more common data analysis methods, such as Principal Component Analysis (PCA). SIGDA is used to visualize complex data sets in a way that accurately preserves data patterns and behavior. SIGDA is designed to preserve relative ratios in a numerical matrix, and the number of entries has to be more than the total number of rows and columns. Our research involved providing a simple explanation of SIGDA's mathematical process—simple enough for the …

Impacts Of Nutrient Enrichment On Native And Non-Native Plants In Serpentine Soil, Amber R. Williams, Mary Devlin, N. Rajakaruna

STAR Program Research Presentations

Serpentine soil, derived from serpentinite, California’s state rock, is characterized by its harsh nature - due to its low levels of essential nutrients and exceptionally high levels of toxic heavy metals.In California, serpentine soils are characterized by high levels of plant endemism and rarity. Plants occurring in serpentine soil exhibit extreme tolerance of harsh soil conditions, and are typically out-competed in ‘normal’ soils due to the cost associated with physiological specialization. Atmospheric nutrient deposition is contributing to a greater invasion of non-native grass species on serpentine soils, outcompeting the native species and threatening them with local extinction. Our greenhouse study …

Tof-Sims Analysis Of Plant Seed Interactions With Plant Growth-Promoting Bacteria, Tammy Pheuphong, Rachel Komorek, Xiao-Ying Yu

STAR Program Research Presentations

The use of time-of-flight secondary ion mass spectrometry (ToF-SIMS) in plant biology is a relatively unexplored and quickly developing field. The majority of research in plant SIMS involves the application of ToF-SIMS to study dried wood tissues, and only a handful of studies apply SIMS on plant stems, roots, and/or seeds. Our project provides a brief description and review of previous work using SIMS on plant stems, roots, and/or seeds, along with an emphasis on the sample preparation in each study. Additionally, the use of Brachypodium distachyon (Brachypodium) as a model system for research on grasses has also become more …

Influence Of A Guanidine Riboswitch In Bacterial Cells, Erik S. Timsak, Jefferey A. Kimbrel, Chris S. Ward, Rhona K. Stuart, Michael P. Thelen

STAR Program Research Presentations

Bacteria live in environments containing complex ecologies of other microbes that communicate and survive through the action of a variety of small metabolic compounds. One common yet relatively unstudied metabolite is guanidine. Although it can be toxic to cells, recent studies have revealed that guanidine may function as a cellular metabolite through a specialized RNA sequence known as a riboswitch. Within our overall project on improving algal productivity, the focus of this study is to: (a) describe various guanidine riboswitch sequences in bacteria that interact with biofuel producing algae; and (b) determine if guanidine has a positive or negative influence …

More Rapid Increase In Bmi From Age 5–15 Is Associated With Elevated Weight Status At Age 24 Among Non-Hispanic White Females, Katherine N. Balantekin, Emily E. Hohman, Elizabeth L. Adams, Michele E. Marini, Alison K. Ventura, Leann L. Birch, Jennifer S. Savage

Kinesiology and Public Health

Background: A rapidly increasing BMI trajectory throughout childhood is associated with negative health outcomes in adulthood such as obesity, cardiovascular disease, and diabetes. The purpose of the current study was to assess whether BMI trajectories from age 5–15 predicted changes in weight and BMI from adolescence to adulthood, and dieting-related behaviors in young adulthood.

Methods: Non-Hispanic White female participants from Early Dieting in Girls (n=182), a longitudinal cohort study, were followed from age 5 to 15 and completed a follow-up survey at age 24. Participants were classified by age 5–15 BMI trajectory groups: UPC, accelerated weight gain from age …

Inducing Ni Sensitivity In The Ni Hyperaccumulator Plant Alyssum Inflatum Nyárády (Brassicaceae) By Transforming With Cax1, A Vacuolar Membrane Calcium Transporter, Rasoul Ghasemi, Hoorieh Share, Roza Sharif, Robert S. Boyd, Nishanta Rajakaruna

Biological Sciences

The importance of calcium in nickel tolerance was studied in the nickel hyperaccumulator plant Alyssum inflatum by gene transformation of CAX1, a vacuolar membrane transporter that reduces cytosolic calcium. CAX1 from Arabidopsis thaliana with a CaMV35S promoter accompanying a kanamycin resistance gene was transferred into A. inflatum using Agrobacterium tumefaciens. Transformed calli were subcultured three times on kanamycin-rich media and transformation was confirmed by PCR using a specific primer for CAX1. At least 10 callus lines were used as a pool of transformed material. Both transformed and untransformed calli were treated with varying concentrations of either calcium (1–15 mM) or …