Electrical and Computer Engineering Commons^™

A Single Chip Computational Sensor System For Neutron Detection Applications, Nathan R. Schemm, Sina Balkir, Michael Hoffman, Mark Bauer, David Schultz, James C. Petrosky, John W. Mcclory, Marcus Natta, Jennifer I. Brand, Jinke Tang, Wendong Wang

Department of Electrical and Computer Engineering: Faculty Publications

This paper presents the design and test results of a standalone computational radiation sensor system based on a single chip solution. A low-power sensor front end with a charge sensitive amplifier and an event driven analog-to-digital converter is integrated on the same chip as a dedicated microcontroller to process and bin the data from the neutron detector diode heterojunction according to pulse height. This combination effectively implements a single chip multichannel analyzer with the capability to do further processing of the data in software. The design was fabricated in a 0.18 CMOS technology with field tests demonstrating the validity of …

Flying Mobile On-Board Ellipsometer, Polarimeter, Reflectometer And The Like Systems, Blaine D. Johs, Ping He, Martin M. Liphardt, Christopher A. Goeden, John A. Woollam, James D. Welch

Department of Electrical and Computer Engineering: Faculty Publications

A substantially self-contained "on-board" material system investigation system for effecting relative translational and rotational motion between a source and detector of electromagnetic radiation and a sample, which system is functionally mounted on a three-dimensional locational system to enable positioning at desired locations on, and distances from, the surface of a sample, including the capability to easily and conveniently effect rotation and/or to change the angle-of-incidence of a beam of electromagnetic radiation onto a sample surface and/or to provide gas flow confined in a mini-chamber near the surface of a sample, at a location at which a beam having UV, VUV, …

Assembly Of Ordered Carbon Shells On Semconducting Nanomaterals, Eli Anguelova Sutter, Peter Werner Sutter

Department of Electrical and Computer Engineering: Faculty Publications

In some embodiments of the invention, encapsulated semiconducting nanomaterials are described. In certain embodiments the nanostructures described are semiconducting nanomaterials encapsulated with ordered carbon shells. In some aspects a method for producing encapsulated semiconducting nanomaterials is disclosed. In some embodiments applications of encapsulated semiconducting nanomaterials are described.

Large Direct Repeats Flank Genomic Rearrangements Between A New Clinical Isolate Of Francisella Tularensis Subsp. Tularensis A1 And Schu S4, Ufuk Nalbantoglu, Khalid Sayood, Michael P. Dempsey, Peter C. Iwen, Stephen C. Francesconi, Ravi D. Barabote, Gary Xie, Thomas S. Brettin, Steven H. Hinrichs, Paul D. Fey

Department of Electrical and Computer Engineering: Faculty Publications

Francisella tularensis subspecies tularensis consists of two separate populations A1 and A2. This report describes the complete genome sequence of NE061598, an F. tularensis subspecies tularensis A1 isolated in 1998 from a human with clinical disease in Nebraska, United States of America. The genome sequence was compared to Schu S4, an F. tularensis subspecies tularensis A1a strain originally isolated in Ohio in 1941. It was determined that there were 25 nucleotide polymorphisms (22 SNPs and 3 indels) between Schu S4 and NE061598; two of these polymorphisms were in potential virulence loci. Pulsed-field gel electrophoresis analysis demonstrated that NE061598 was an …

Protein Adsorption On And Swelling Of Polyelectrolyte Brushes: A Simultaneous Ellipsometry-Quartz Crystal Microbalance Study, Eva Bittrich, Keith B. Rodenhausen Jr., Klaus-Jochen Eichhorn, Tino Hofmann, Mathias Schubert, Manfred Stamm, Petra Uhlmann

Department of Electrical and Computer Engineering: Faculty Publications

With a coupled spectroscopic ellipsometry-quartz crystal microbalance with dissipation (QCM-D) experimental setup, quantitative information can be obtained about the amount of buffer components (water molecules and ions) coupled to a poly(acrylic acid) (PAA) brush surface in swelling and protein adsorption processes. PAA Guiselin brushes with more than one anchoring point per single polymer chain were prepared. For the swollen brushes a high amount of buffer was found to be coupled to the brush-solution interface in addition to the content of buffer inside the brush layer. Upon adsorption of bovine serum albumin the further incorporation of buffer molecules into the protein-brush …

Data Compression Concepts And Algorithms And Their Applications To Bioinformatics, Ozkan U. Nalbantoglu, David J. Russell, Khalid Sayood

Department of Electrical and Computer Engineering: Faculty Publications

Data compression at its base is concerned with how information is organized in data. Understanding this organization can lead to efficient ways of representing the information and hence data compression. In this paper we review the ways in which ideas and approaches fundamental to the theory and practice of data compression have been used in the area of bioinformatics. We look at how basic theoretical ideas from data compression, such as the notions of entropy, mutual information, and complexity have been used for analyzing biological sequences in order to discover hidden patterns, infer phylogenetic relationships between organisms and study viral …

Discrete Coordinate Transformation For Designing All-Dielectric Flat Antennas, Wenxuan Tang, Christos Argyropoulos, Efthymios Kallos, Wei Song, Yang Hao

Department of Electrical and Computer Engineering: Faculty Publications

Transformation electromagnetics provides a practical approach to control electromagnetic fields at will. Based on this principle, novel devices such as the invisible cloak have been proposed. Here we examine the extension of this technique as applied to the design of flat devices in antenna systems. A method using discrete coordinate transformation is proposed, which allows the conversion of conventional devices with curved shapes into flat systems, while preserving their non-dispersive, isotropic, broadband, and lossless properties. Two specific design examples, a flat reflector and a flat lens embedded in free space, are presented. To avoid the loss and narrow bandwidth issues …

Clustering Of Protein Families Into Functional Subtypes Using Relative Complexity Measure With Reduced Amino Acid Alphabets, Aydin Albayrak, Hasan H. Otu, Ugur O. Sezerman

Department of Electrical and Computer Engineering: Faculty Publications

Background: Phylogenetic analysis can be used to divide a protein family into subfamilies in the absence of experimental information. Most phylogenetic analysis methods utilize multiple alignment of sequences and are based on an evolutionary model. However, multiple alignment is not an automated procedure and requires human intervention to maintain alignment integrity and to produce phylogenies consistent with the functional splits in underlying sequences. To address this problem, we propose to use the alignment-free Relative Complexity Measure (RCM) combined with reduced amino acid alphabets to cluster protein families into functional subtypes purely on sequence criteria. Comparison with an alignment-based approach was …

Bioinformatic Identification And Characterization Of Human Endothelial Cell-Restricted Genes, Manoj Bhasin, Lei Yuan, Derin B. Keskin, Hasan H. Otu, Towia A. Libermann, Peter Oettgen

Department of Electrical and Computer Engineering: Faculty Publications

Background: In this study, we used a systematic bioinformatics analysis approach to elucidate genes that exhibit an endothelial cell (EC) restricted expression pattern, and began to define their regulation, tissue distribution, and potential biological role.

Results:Using a high throughput microarray platform, a primary set of 1,191 transcripts that are enriched in different primary ECs compared to non-ECs was identified (LCB >3, FDR

Conclusion: The study provides an initial catalogue of EC-restricted genes most of which are ubiquitously expressed in different endothelial cells.

Tob1 Is A Constitutively Expressed Repressor Of Liver Regeneration, Karen J. Ho, Nhue L. Do, Hasan H. Otu, Martin J. Dib, Xianghui Ren, Keiichi Enjyoji, Simon C. Robson, Ernest F. Terwilliger, Seth J. Karp

Department of Electrical and Computer Engineering: Faculty Publications

How proliferative and inhibitory signals integrate to control liver regeneration remains poorly understood. A screen for antiproliferative factors repressed after liver injury identified transducer of ErbB2.1 (Tob1), a member of the PC3/BTG1 family of mito-inhibitory molecules as a target for further evaluation. Tob1 protein decreases after 2/3 hepatectomy in mice secondary to posttranscriptional mechanisms. Deletion of Tob1 increases hepatocyte proliferation and accelerates restoration of liver mass after hepatectomy. Down-regulation of Tob1 is required for normal liver regeneration, and Tob1 controls hepatocyte proliferation in a dose-dependent fashion. Tob1 associates directly with both Caf1 and cyclindependent kinase (Cdk) 1 and …

Iterative Signal Processing In Communications, Christian Schlegel, Peter Hoeher, Owe Axelsson, Lance C. Pérez

Department of Electrical and Computer Engineering: Faculty Publications

Iterative signal processing in communications has experienced an explosive rise in popularity in recent years. The catalytic origins of this paradigm-shifting new philosophy among communications experts can be traced to the invention of turbo coding, and the subsequent rediscovery of low-density parity check (LDPC) coding, both in the field of error control coding. Both systems rely on iterative decoding algorithms to achieve their astounding performance. However, iterative signal processing is not confined to the decoding of error control codes and rather quickly spread to many other possible applications. The purpose of this special issue is to examine the concept of …

The Manifestation Of Stopping Sets And Absorbing Sets As Deviations On The Computation Trees Of Ldpc Codes, Eric T. Psota, Lance C. Perez

Department of Electrical and Computer Engineering: Faculty Publications

The error mechanisms of iterative message-passing decoders for low-density parity-check codes are studied. A tutorial review is given of the various graphical structures, including trapping sets, stopping sets, and absorbing sets that are frequently used to characterize the errors observed in simulations of iterative decoding of low-density parity-check codes. The connections between trapping sets and deviations on computation trees are explored in depth using the notion of problematic trapping sets in order to bridge the experimental and analytic approaches to these error mechanisms. A new iterative algorithm for finding low-weight problematic trapping sets is presented and shown to be capable …

Mimo Self-Encoded Spread Spectrum With Iterative Detection Over Rayleigh Fading Channels, Shichuan Ma, Lim Nguyen, Won Mee Jang, Yaoqing (Lamar) Yang

Department of Electrical and Computer Engineering: Faculty Publications

Self-encoded spread spectrum (SESS) is a novel communication technique that derives its spreading code from the randomness of the source stream rather than using conventional pseudorandom noise (PN) code. In this paper, we propose to incorporate SESS in multiple-input multiple-output (MIMO) systems as a means to combat against fading effects in wireless channels. Orthogonal space-time block-coded MIMO technique is employed to achieve spatial diversity, and the inherent temporal diversity in SESS modulation is exploited with iterative detection. Simulation results demonstrate that MIMO-SESS can effectively mitigate the channel fading effect such that the system can achieve a bit error rate of …

Non-Destructiveapproachto Ellipsometric Monitoring Of A Film Coating On The Inner Surface Of A Tube Shaped Sample, Gregory K. Prilbil, John A. Woollam, Martin M. Liphardt, James D. Welch

Department of Electrical and Computer Engineering: Faculty Publications

Disclosed is the use of a focused electromagnetic beam which is caused to impinge on the top surface of a tube shaped sample, to investigate a film coating on inner surface during fabrication thereof and/or thereafter.

A Non-Vacuum Process For Preparing Nanocrystalline Cuin1−XGaXSe2 Materials Involving An Open-Air Solvothermal Reaction, J. Olejníček, Chad A. Kamler, A. Mirasano, A. L. Martinez-Skinner, M. A. Ingersoll, C. L. Exstrom, S. A. Darveau, J. L. Huguenin-Love, M. Diaz, Natale J. Ianno, Rodney J. Soukup

Department of Electrical and Computer Engineering: Faculty Publications

A non-vacuum, two-step process has been used to prepare a series of nanocrystalline CuIn_1−xGa_xSe₂ (x = 0, 0.25, 0.5, 0.75, 1) materials. An open-air solvothermal preparation in triethylenetetramine solvent was followed by annealing at 500 °C in a nitrogen atmosphere for 20 min. All materials have mixed clustered plate, spherical particle, and nanorod morphologies with the smallest particle diameters ranging between 20 and 40 nm. Raman spectroscopy and X-ray diffraction (XRD) confirm that indium/gallium ratio control is possible over a wide range. The solvothermal reaction step yields a mixture of chalcopyrite and Cu …

Magneto-Optical Properties Of Cobalt Slanted Columnar Thin Films, Daniel Schmidt, Tino Hofmann, Craig M. Herzinger, Eva Schubert, Mathias Schubert

Department of Electrical and Computer Engineering: Faculty Publications

Magneto-optical properties of ferromagnetic slanted columnar thin films from cobalt made by electron-beam glancing angle deposition are reported. Magneto-optic ellipsometry in the polar Kerr effect configuration was employed to determine the field- and wavelength-dependent complex magneto-optic polarizability parameter within the spectral range from 0.74 to 3.0 eV. Kerr effect measurements and calculations reveal a strong azimuthal dependence for the incident linear polarization with peak Kerr rotation one order of magnitude larger than what has been reported for solid Co thin films.

Hydrogen In Inn: A Ubiquitous Phenomenon In Molecular Beam Epitaxy Grown Material, V. Darakchieva, K. Lorenz, N. P. Barradas, E. Alves, B. Monemar, Mathias Schubert, N. Franco, C. L. Hsiao, L. C. Chen, W. J. Schaff, L. W. Tu, T. Yamaguchi, Y. Nanishi

Department of Electrical and Computer Engineering: Faculty Publications

We study the unintentional H impurities in relation to the free electron properties of state-of-the-art InN films grown by molecular beam epitaxy (MBE). Enhanced concentrations of H are revealed in the near surface regions of the films, indicating postgrowth surface contamination by H. The near surface hydrogen could not be removed upon thermal annealing and may have significant implications for the surface and bulk free electron properties of InN. The bulk free electron concentrations were found to scale with the bulk H concentrations while no distinct correlation with dislocation density could be inferred, indicating a major role of hydrogen for …

Secure Communication Over Fading Channels With Statistical Qos Constraints, Deli Qiao, M. Cenk Gursoy, Senem Velipasalar

Department of Electrical and Computer Engineering: Faculty Publications

In this paper, secure transmission of information over an ergodic fading channel is studied in the presence of statistical quality of service (QoS) constraints.We employ effective capacity to measure the secure throughput of the system, i.e., effective secure throughput. We assume that the channel side information (CSI) of the main and the eavesdropper channels is available at the transmitter side. Under this assumption, we investigate the optimal power control policies that maximize the effective secure throughput. In particular, it is noted that opportunistic transmission is no longer optimal and the transmitter should not wait to send the data at …

A Noncooperative Power Control Game In Multiple-Access Fading Channels With Qos Constraints, Deli Qiao, M. Cenk Gursoy, Senem Velipasalar

Department of Electrical and Computer Engineering: Faculty Publications

In this paper, a game-theoretic analysis for the resource allocation policies in fading multiple-access channels (MAC) in the presence of quality of service (QoS) constraints is performed. Effective capacity, which provides the maximum constant arrival rate, or throughput, that a given service process can support while satisfying statistical delay constraints, is considered in a multiuser scenario. We assume that the channel side information (CSI) is available at both the receiver and transmitters, and the transmitters are selfish, rational with certain QoS constraints and average power limitations. Without the aid of the receiver, we prove that there is always a unique …

A Grammar-Based Distance Metric Enables Fast And Accurate Clustering Of Large Sets Of 16s Sequences, David J. Russell, Samuel F. Way, Andrew K. Benson, Khalid Sayood

Department of Electrical and Computer Engineering: Faculty Publications

Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. The proposed clustering algorithm uses a grammar-based distance metric to determine partitioning for a set of biological sequences. The algorithm performs clustering in which new sequences are compared with cluster-representative sequences to determine membership. If comparison fails to identify a suitable cluster, a new cluster is created.

Results: The performance of the proposed algorithm is validated via comparison to the popular DNA/RNA sequence clustering approach, CD-HIT-EST, and to the recently developed algorithm, …

Interface Polarization Coupling In Piezoelectric-Semiconductor Ferroelectric Heterostructures, Venkata M. Voora, Tino Hofmann, M. Brandt, M. Lorenz, M. Grundmann, N. Ashkenov, H. Schmidt, Natale J. Ianno, Mathias Schubert

Department of Electrical and Computer Engineering: Faculty Publications

We present a dielectric continuum model approach for studying the electrical polarization properties of interface polarization coupled BaTiO₃, BaTiO₃-ZnO, and ZnO-BaTiO₃-ZnO thin-film structures consisting of several hundred nanometer thick layers. Our model augments the effects of electric field driven switchable polarization and depletion layer formation with spontaneous interface polarization coupling. Wurtzite-structure (piezoelectric) n-type ZnO and perovskite-structure (ferroelectric) highly insulating BaTiO₃ layers were prepared and investigated. The coupling between the nonswitchable spontaneous polarization of ZnO and the electrically switchable spontaneous polarization of BaTiO₃ causes strong asymmetric polarization hysteresis behavior. The n-type ZnO reveals …

Variable-Wavelength Frequency-Domain Terahertz Ellipsometry, Tino Hofmann, C. M. Herzinger, A. Boosalis, T. E. Tiwald, John A. Woollam, Mathias Schubert

Department of Electrical and Computer Engineering: Faculty Publications

We report an experimental setup for wavelength-tunable frequency-domain ellipsometric measurements in the terahertz spectral range from 0.2 to 1.5 THz employing a desktop-based backward wave oscillator source. The instrument allows for variable angles of incidence between 30° and 90° and operates in a polarizer-sample-rotating analyzer scheme. The backward wave oscillator source has a tunable base frequency of 107–177 GHz and is augmented with a set of Schottky diode frequency multipliers in order to extend the spectral range to 1.5 THz. We use an odd-bounce image rotation system in combination with a wire grid polarizer to prepare the input polarization state. …