Computational Engineering Commons^™

Path-Bigbird: An Ai-Driven Transformer Approach To Classification Of Cancer Pathology Reports, Mayanka Chandrashekar, Isaac Lyngaas, Heidi A. Hanson, Shang Gao, Xiao Cheng Wu, John Gounley

School of Public Health Faculty Publications

PURPOSE: Surgical pathology reports are critical for cancer diagnosis and management. To accurately extract information about tumor characteristics from pathology reports in near real time, we explore the impact of using domain-specific transformer models that understand cancer pathology reports. METHODS: We built a pathology transformer model, Path-BigBird, by using 2.7 million pathology reports from six SEER cancer registries. We then compare different variations of Path-BigBird with two less computationally intensive methods: Hierarchical Self-Attention Network (HiSAN) classification model and an off-the-shelf clinical transformer model (Clinical BigBird). We use five pathology information extraction tasks for evaluation: site, subsite, laterality, histology, and behavior. …

Adaptable And Trustworthy Machine Learning For Human Activity Recognition From Bioelectric Signals, Morgan S. Stuart

Theses and Dissertations

Enabling machines to learn measures of human activity from bioelectric signals has many applications in human-machine interaction and healthcare. However, labeled activity recognition datasets are costly to collect and highly varied, which challenges machine learning techniques that rely on large datasets. Furthermore, activity recognition in practice needs to account for user trust - models are motivated to enable interpretability, usability, and information privacy. The objective of this dissertation is to improve adaptability and trustworthiness of machine learning models for human activity recognition from bioelectric signals. We improve adaptability by developing pretraining techniques that initialize models for later specialization to unseen …

Adaptive Neh With Constrained Nearest Neighbor Subtours For The Electric Vehicle Routing Problem With Time Windows, Andrew Struthers

All Master's Theses

The development of electric vehicles is currently considered one of the most innovative areas in manufacturing. Largely driven by the desire to reduce greenhouse emissions, electric vehicles are seen as a viable alternative to internal combustion engine cars. Starting from consumer cars, a dedicated effort is being made to translate this into commercial vehicles for freight and delivery. This research introduces a novel adaptive Nawaz, Enscore, Ham (NEH) algorithm with constrained nearest neighbor subtour (NEH-NN). This algorithm is tested on the standard benchmark problems in literature and used as a seed solution for the Genetic Algorithm (GA). The performance and …

Freyr⁺: Harvesting Idle Resources In Serverless Computing Via Deep Reinforcement Learning, Hanfei Yu, Hao Wang, Jian Li, Xu Yuan, Seung Jong Park

Computer Science Faculty Research & Creative Works

Serverless computing has revolutionized online service development and deployment with ease-to-use operations, auto-scaling, fine-grained resource allocation, and pay-as-you-go pricing. However, a gap remains in configuring serverless functions - the actual resource consumption may vary due to function types, dependencies, and input data sizes, thus mismatching the static resource configuration by users. Dynamic resource consumption against static configuration may lead to either poor function execution performance or low utilization. This paper proposes Freyr+, a novel resource manager (RM) that dynamically harvests idle resources from over-provisioned functions to accelerate under-provisioned functions for serverless platforms. Freyr+ monitors each function's resource utilization in real-time …

Disentangling Cyclic Causality: An Instance-Based Framework For Causal Discovery, Chase A. Yakaboski

Dartmouth College Ph.D Dissertations

Correlation does not imply causation" is one of the fundamental principles taught in science, emphasizing that associations between variables do not necessarily indicate causality. Yet, over the past three decades, extensive research has begun to challenge this perspective by developing sophisticated methods to differentiate causal from correlative relationships. This research suggests that correlations often involve a blend of confounded and causal interactions, which, given certain assumptions, can be disentangled to uncover actionable insights and deepen our understanding of physical, biological, and societal systems.

Accurately discovering causal relationships from data amidst cyclic dynamics remains a challenging open problem in causality research. …

The Integration Of Neuromorphic Computing In Autonomous Robotic Systems, Md Abu Bakr Siddique

Dissertations, Master's Theses and Master's Reports

Deep Neural Networks (DNNs) have come a long way in many cognitive tasks by training on large, labeled datasets. However, this method has problems in places with limited data and energy, like when planetary robots are used or when edge computing is used [1]. In contrast to this data-heavy approach, animals demonstrate an innate ability to learn by communicating with their environment and forming associative memories among events and entities, a process known as associative learning [2-4]. For instance, rats in a T-maze learn to associate different stimuli with outcomes through exploration without needing labeled data [5]. This learning paradigm …

Balanced Blended Space: Proposing A Universal Theoretical Framework For Combinative Reality, David Smith, Frederick Bianchi

Publications and Research

In today's fragmented societies, a unified framework for communication and collaboration across different realities is crucial. We introduce Balanced Blended Space (BBS) as a framework for describing combinative reality, encompassing virtual, physical, and conceptual realms, all intrinsically connected. Interactions within these environments shape our perceptual space. This paper outlines key axiomatic assumptions, criteria for a universal framework, and fundamental terminology. We identify deep symmetries enabling the BBS framework, including Cognitive and Computational Symmetry, Physical and Virtual Symmetry, Mediation Pathway Symmetry, Space-Time Symmetry, and Sensory Symmetry. We propose tests to determine its viability, emphasizing virtual intelligence as a collaborative partner. We …

Visualizing Transaction-Level Modeling Simulations Of Deep Neural Networks, Nataniel Farzan, Emad Arasteh

Engineering Technical Reports

The growing complexity of data-intensive software demands constant innovation in computer hardware design. Performance is a critical factor in rapidly evolving applications such as artificial intelligence (AI). Transaction-level modeling (TLM) is a valuable technique used to represent hardware and software behavior in a simulated environment. However, extracting actionable insights from TLM simulations is not a trivial task. We present Netmemvisual, an interactive, cross-platform visualization tool for exposing memory bottlenecks in TLM simulations. We demonstrate how Netmemvisual helps system designers rapidly analyze complex TLM simulations to find memory contention. We describe the project’s current features, experimental results with two state-of-the-art deep …

Do Plants Have The Cognitive Complexity For Sentience?, Ricard V. Solé

Animal Sentience

Are plants sentient? Like other aspects of the cognitive potential of plants, this is a controversial issue, often driven by analogies and seldom supported on solid theoretical grounds. Sentience is understood in cognitive sciences as the capacity to feel. I suggest that because of plants’ evolved adaptations to morphological plasticity, sessile nature and ecological constraints, they are unlikely to have the requisite cognitive complexity for sentience.

Machine Learning-Based Data And Model Driven Bayesian Uncertanity Quantification Of Inverse Problems For Suspended Non-Structural System, Zhiyuan Qin

All Dissertations

Inverse problems involve extracting the internal structure of a physical system from noisy measurement data. In many fields, the Bayesian inference is used to address the ill-conditioned nature of the inverse problem by incorporating prior information through an initial distribution. In the nonparametric Bayesian framework, surrogate models such as Gaussian Processes or Deep Neural Networks are used as flexible and effective probabilistic modeling tools to overcome the high-dimensional curse and reduce computational costs. In practical systems and computer models, uncertainties can be addressed through parameter calibration, sensitivity analysis, and uncertainty quantification, leading to improved reliability and robustness of decision and …

Achieving Causal Fairness In Recommendation, Wen Huang

Graduate Theses and Dissertations

Recommender systems provide personalized services for users seeking information and play an increasingly important role in online applications. While most research papers focus on inventing machine learning algorithms to fit user behavior data and maximizing predictive performance in recommendation, it is also very important to develop fairness-aware machine learning algorithms such that the decisions made by them are not only accurate but also meet desired fairness requirements. In personalized recommendation, although there are many works focusing on fairness and discrimination, how to achieve user-side fairness in bandit recommendation from a causal perspective still remains a challenging task. Besides, the deployed …

Enhancement Of Deep Learning Protein Structure Prediction, Ruoming Shen

Modeling, Simulation and Visualization Student Capstone Conference

Protein modeling is a rapidly expanding field with valuable applications in the pharmaceutical industry. Accurate protein structure prediction facilitates drug design, as extensive knowledge about the atomic structure of a given protein enables scientists to target that protein in the human body. However, protein structure identification in certain types of protein images remains challenging, with medium resolution cryogenic electron microscopy (cryo-EM) protein density maps particularly difficult to analyze. Recent advancements in computational methods, namely deep learning, have improved protein modeling. To maximize its accuracy, a deep learning model requires copious amounts of up-to-date training data.

This project explores DeepSSETracer, a …

Statistical Approach To Quantifying Interceptability Of Interaction Scenarios For Testing Autonomous Surface Vessels, Benjamin E. Hargis, Yiannis E. Papelis

Modeling, Simulation and Visualization Student Capstone Conference

This paper presents a probabilistic approach to quantifying interceptability of an interaction scenario designed to test collision avoidance of autonomous navigation algorithms. Interceptability is one of many measures to determine the complexity or difficulty of an interaction scenario. This approach uses a combined probability model of capability and intent to create a predicted position probability map for the system under test. Then, intercept-ability is quantified by determining the overlap between the system under test probability map and the intruder’s capability model. The approach is general; however, a demonstration is provided using kinematic capability models and an odometry-based intent model.

An Algorithm For Finding Data Dependencies In An Event Graph, Erik J. Jensen

Modeling, Simulation and Visualization Student Capstone Conference

This work presents an algorithm for finding data dependencies in a discrete-event simulation system, from the event graph of the system. The algorithm can be used within a parallel discrete-event simulation. Also presented is an experimental system and event graph, which is used for testing the algorithm. Results indicate that the algorithm can provide information about which vertices in the experimental event graph can affect other vertices, and the minimum amount of time in which this interference can occur.

Towards Nlp-Based Conceptual Modeling Frameworks, David Shuttleworth, Jose Padilla

Modeling, Simulation and Visualization Student Capstone Conference

This paper presents preliminary research using Natural Language Processing (NLP) to support the development of conceptual modeling frameworks. NLP-based frameworks are intended to lower the barrier of entry for non-modelers to develop models and to facilitate communication across disciplines considering simulations in research efforts. NLP drives conceptual modeling in two ways. Firstly, it attempts to automate the generation of conceptual models and simulation specifications, derived from non-modelers’ narratives, while standardizing the conceptual modeling process and outcome. Secondly, as the process is automated, it is simpler to replicate and be followed by modelers and non-modelers. This allows for using a common …

Lidar Buoy Detection For Autonomous Marine Vessel Using Pointnet Classification, Christopher Adolphi, Dorothy Dorie Parry, Yaohang Li, Masha Sosonkina, Ahmet Saglam, Yiannis E. Papelis

Modeling, Simulation and Visualization Student Capstone Conference

Maritime autonomy, specifically the use of autonomous and semi-autonomous maritime vessels, is a key enabling technology supporting a set of diverse and critical research areas, including coastal and environmental resilience, assessment of waterway health, ecosystem/asset monitoring and maritime port security. Critical to the safe, efficient and reliable operation of an autonomous maritime vessel is its ability to perceive on-the-fly the external environment through onboard sensors. In this paper, buoy detection for LiDAR images is explored by using several tools and techniques: machine learning methods, Unity Game Engine (herein referred to as Unity) simulation, and traditional image processing. The Unity Game …

Chatgpt As Metamorphosis Designer For The Future Of Artificial Intelligence (Ai): A Conceptual Investigation, Amarjit Kumar Singh (Library Assistant), Dr. Pankaj Mathur (Deputy Librarian)

Library Philosophy and Practice (e-journal)

Abstract

Purpose: The purpose of this research paper is to explore ChatGPT’s potential as an innovative designer tool for the future development of artificial intelligence. Specifically, this conceptual investigation aims to analyze ChatGPT’s capabilities as a tool for designing and developing near about human intelligent systems for futuristic used and developed in the field of Artificial Intelligence (AI). Also with the helps of this paper, researchers are analyzed the strengths and weaknesses of ChatGPT as a tool, and identify possible areas for improvement in its development and implementation. This investigation focused on the various features and functions of ChatGPT that …

Drone Detection Using Yolov5, Burchan Aydin, Subroto Singha

Faculty Publications

The rapidly increasing number of drones in the national airspace, including those for recreational and commercial applications, has raised concerns regarding misuse. Autonomous drone detection systems offer a probable solution to overcoming the issue of potential drone misuse, such as drug smuggling, violating people’s privacy, etc. Detecting drones can be difficult, due to similar objects in the sky, such as airplanes and birds. In addition, automated drone detection systems need to be trained with ample amounts of data to provide high accuracy. Real-time detection is also necessary, but this requires highly configured devices such as a graphical processing unit (GPU). …

Anomaly Based Intrusion Detection System Through Remote Virtual Machine Introspection, Huseyn Huseynov

Dissertations and Theses

Research on identifying malicious applications is an important direction in information security, especially when it comes to detection of evasive malware such as keyloggers, trojans, rootkits and their derivatives. Inspired by a biological immune system and based on negative selection algorithm approach to detect various types of malwares is proposed in this paper.

By deeply studying Linux kernel, understanding links behind different internal system processes, examining, and experimenting with hundreds of various keyloggers we propose a single Artificial Intelligence based solution as a comprehensive protection against wide range of malwares. Developed Intrusion Detection System (IDS) can be deployed in the …

Liquid Tab, Nathan Hulet

Williams Honors College, Honors Research Projects

Guitar transcription is a complex task requiring significant time, skill, and musical knowledge to achieve accurate results. Since most music is recorded and processed digitally, it would seem like many tools to digitally analyze and transcribe the audio would be available. However, the problem of automatic transcription presents many more difficulties than are initially evident. There are multiple ways to play a guitar, many diverse styles of playing, and every guitar sounds different. These problems become even more difficult considering the varying qualities of recordings and levels of background noise.

Machine learning has proven itself to be a flexible tool …

Comparative Analysis Of Fullstack Development Technologies: Frontend, Backend And Database, Qozeem Odeniran

College of Graduate Studies: Theses & Dissertations

Accessing websites with various devices has brought changes in the field of application development. The choice of cross-platform, reusable frameworks is very crucial in this era. This thesis embarks in the evaluation of front-end, back-end, and database technologies to address the status quo. Study-a explores front-end development, focusing on angular.js and react.js. Using these frameworks, comparative web applications were created and evaluated locally. Important insights were obtained through benchmark tests, lighthouse metrics, and architectural evaluations. React.js proves to be a performance leader in spite of the possible influence of a virtual machine, opening the door for additional research. Study b …

Neuromorphic Computing Applications In Robotics, Noah Zins

Dissertations, Master's Theses and Master's Reports

Deep learning achieves remarkable success through training using massively labeled datasets. However, the high demands on the datasets impede the feasibility of deep learning in edge computing scenarios and suffer from the data scarcity issue. Rather than relying on labeled data, animals learn by interacting with their surroundings and memorizing the relationships between events and objects. This learning paradigm is referred to as associative learning. The successful implementation of associative learning imitates self-learning schemes analogous to animals which resolve the challenges of deep learning. Current state-of-the-art implementations of associative memory are limited to simulations with small-scale and offline paradigms. Thus, …

Wildfire Spread Prediction Using Attention Mechanisms In U-Net, Kamen Haresh Shah, Kamen Haresh Shah

Master's Theses

An investigation into using attention mechanisms for better feature extraction in wildfire spread prediction models. This research examines the U-net architecture to achieve image segmentation, a process that partitions images by classifying pixels into one of two classes. The deep learning models explored in this research integrate modern deep learning architectures, and techniques used to optimize them. The models are trained on 12 distinct observational variables derived from the Google Earth Engine catalog. Evaluation is conducted with accuracy, Dice coefficient score, ROC-AUC, and F1-score. This research concludes that when augmenting U-net with attention mechanisms, the attention component improves feature suppression …

Software Protection And Secure Authentication For Autonomous Vehicular Cloud Computing, Muhammad Hataba

Dissertations

Artificial Intelligence (AI) is changing every technology we deal with. Autonomy has been a sought-after goal in vehicles, and now more than ever we are very close to that goal. Vehicles before were dumb mechanical devices, now they are becoming smart, computerized, and connected coined as Autonomous Vehicles (AVs). Moreover, researchers found a way to make more use of these enormous capabilities and introduced Autonomous Vehicles Cloud Computing (AVCC). In these platforms, vehicles can lend their unused resources and sensory data to join AVCC.

In this dissertation, we investigate security and privacy issues in AVCC. As background, we built our …

Single-Pass Inline Pipeline 3d Reconstruction Using Depth Camera Array, Zhexiong Shang, Zhigang Shen

Department of Construction Engineering and Management: Faculty Publications

A novel inline inspection (ILI) approach using depth cameras array (DCA) is introduced to create high-fidelity, dense 3D pipeline models. A new camera calibration method is introduced to register the color and the depth information of the cameras into a unified pipe model. By incorporating the calibration outcomes into a robust camera motion estimation approach, dense and complete 3D pipe surface reconstruction is achieved by using only the inline image data collected by a self-powered ILI rover in a single pass through a straight pipeline. The outcomes of the laboratory experiments demonstrate one-millimeter geometrical accuracy and 0.1-pixel photometric accuracy. …

Implementation Of A Least Squares Method To A Navier-Stokes Solver, Jada P. Lytch, Taylor Boatwright, Ja'nya Breeden

Rose-Hulman Undergraduate Mathematics Journal

The Navier-Stokes equations are used to model fluid flow. Examples include fluid structure interactions in the heart, climate and weather modeling, and flow simulations in computer gaming and entertainment. The equations date back to the 1800s, but research and development of numerical approximation algorithms continues to be an active area. To numerically solve the Navier-Stokes equations we implement a least squares finite element algorithm based on work by Roland Glowinski and colleagues. We use the deal.II academic library , the C++ language, and the Linux operating system to implement the solver. We investigate convergence rates and apply the least squares …

A Novel Method For Sensitivity Analysis Of Time-Averaged Chaotic System Solutions, Christian A. Spencer-Coker

Theses and Dissertations

The direct and adjoint methods are to linearize the time-averaged solution of bounded dynamical systems about one or more design parameters. Hence, such methods are one way to obtain the gradient necessary in locally optimizing a dynamical system’s time-averaged behavior over those design parameters. However, when analyzing nonlinear systems whose solutions exhibit chaos, standard direct and adjoint sensitivity methods yield meaningless results due to time-local instability of the system. The present work proposes a new method of solving the direct and adjoint linear systems in time, then tests that method’s ability to solve instances of the Lorenz system that exhibit …

Using Bluetooth Low Energy And E-Ink Displays For Inventory Tracking, David Whelan

Computer Science and Computer Engineering Undergraduate Honors Theses

The combination of Bluetooth Low energy and E-Ink displays allow for a low energy wire-less display. The application of this technology is far reaching especially given how the Bluetooth Low Energy specification can be extended. This paper proposes an extension to this specification specifically for inventory tracking. This extension combined with the low energy E-Ink display results in a smart label that can keep track of additional meta data and inventory counts for physical inventory. This label helps track the physical inventory and can help mitigate any errors in the logical organization of inventory.

Applications Of Parallel Discrete Event Simulation, Erik J. Jensen

Modeling, Simulation and Visualization Student Capstone Conference

This work presents three applications of parallel discrete event simulation (PDES), which describe the motivation for and the benefits of using PDES, the kinds of synchronization algorithms that are used, and scaling behavior with these different synchronization algorithms.

Intra-Hour Solar Forecasting Using Cloud Dynamics Features Extracted From Ground-Based Infrared Sky Images, Guillermo Terrén-Serrano

Electrical and Computer Engineering ETDs

Due to the increasing use of photovoltaic systems, power grids are vulnerable to the projection of shadows from moving clouds. An intra-hour solar forecast provides power grids with the capability of automatically controlling the dispatch of energy, reducing the additional cost for a guaranteed, reliable supply of energy (i.e., energy storage). This dissertation introduces a novel sky imager consisting of a long-wave radiometric infrared camera and a visible light camera with a fisheye lens. The imager is mounted on a solar tracker to maintain the Sun in the center of the images throughout the day, reducing the scattering effect produced …