Engineering Commons^™

12. Kinesiology, Northeastern State University

Oklahoma Research Day Abstracts

No abstract provided.

Evaluation Of The Signature Molecular Descriptor With Blosum62 And An All-Atom Description For Use In Sequence Alignment Of Proteins, Lindsay M. Aichinger

Williams Honors College, Honors Research Projects

This Honors Project focused on a few aspects of this topic. The second is comparing the molecular signature kernels to three of the BLOSUM matrices (30, 62, and 90) to test the accuracy of the mathematical model. The kernel matrix was manipulated in order to improve the relationship by focusing on side groups and also by changing how the structure was represented in the matrix by increasing the initial height distance from the central atom (Height 1 and Height 2 included).

There were multiple design constraints for this project. The first was the comparison with the BLOSUM matrices (30, 62, …

Design Of A Novel Low - Cost, Portable, 3d Ultrasound System With Extended Imaging Capabilities For Point-Of-Care Applications, Michail Tsakalakis

Browse all Theses and Dissertations

Ultrasound Imaging (USI) or Medical Sonography (MS), as it is formally called, has been widely used in biomedical applications over the last decades. USI can provide clinicians with a thorough view of the internal parts of the human body, making use of sound waves of higher frequencies than humans can perceive. USI systems are considered highly portable and of low-cost, compared to other imaging modalities. However, despite those advantages, Ultrasound Systems (US) and especially 3D ones, have not been yet extensively utilized for Point-of-Care (POC) applications, due to numerous restrictions and artifacts that they currently present.

Hardware complexity and real-time …

Evaluation Of Tcp Header Fields For Data Overhead Efficiency, Justin K. Yirka

Undergraduate Research Posters

Bandwidth across the internet is constricted by monetary factors and hardware development, so researchers are left to improve the efficiency of data transmitted in order to improve internet speeds. The transmission control protocol (TCP) is the primary transport protocol on the modern internet, ensuring reliable delivery of the majority of data transmitted. I evaluated the TCP header fields for efficient use of data overhead so as to determine current waste and to suggest possible areas for revision. I examined original specifications for TCP mechanisms, comparing them to modern implementations as determined by updated standards and modern practices in the networking …

Tspoons: Tracking Salience Profiles Of Online News Stories, Kimberly Laurel Paterson

Master's Theses

News space is a relatively nebulous term that describes the general discourse concerning events that affect the populace. Past research has focused on qualitatively analyzing news space in an attempt to answer big questions about how the populace relates to the news and how they respond to it. We want to ask when do stories begin? What stories stand out among the noise? In order to answer the big questions about news space, we need to track the course of individual stories in the news. By analyzing the specific articles that comprise stories, we can synthesize the information gained from …

Combating Integrity Attacks In Industrial Control Systems, Chad Arnold

Browse all Theses and Dissertations

Industrial Control Systems are vulnerable to integrity attacks because of connectivity to the external Internet and trusted internal networking components that can become compromised. Integrity attacks can be modeled, analyzed, and sometimes remedied by exploiting properties of physical devices and reasoning about the trust worthiness of ICS communication components.

Industrial control systems (ICS) monitor and control the processes of public utility that society depends on - the electric power grid, oil and gas pipelines, transportation, and water facilities. Attacks that impact the operations of these critical assets could have devastating consequences. The complexity and desire to interconnect ICS components have …

A Context-Driven Subgraph Model For Literature-Based Discovery, Delroy Huborn Cameron

Browse all Theses and Dissertations

Literature-Based Discovery (LBD) refers to the process of uncovering hidden connections that are implicit in scientific literature. Numerous hypotheses have been generated from scientific literature using the LBD paradigm, which influenced innovations in diagnosis, treatment, preventions and overall public health. However, much of the existing research on discovering hidden connections among concepts have used distributional statistics and graph-theoretic measures to capture implicit associations. Such metrics do not explicitly capture the semantics of hidden connections. Rather, they only allude to the existence of meaningful underlying associations. To gain in-depth insights into the meaning of hidden (and other) connections, complementary methods have …

Enhanced Dna Sensing Via Catalytic Aggregation Of Gold Nanoparticles, Herbert M. Huttanus, Elton Graugnard, Bernard Yurke, William B. Knowlton, Wan Kuang, William L. Hughes, Jeunghoon Lee

Materials Science and Engineering Faculty Publications and Presentations

A catalytic colorimetric detection scheme that incorporates a DNA-based hybridization chain reaction into gold nanoparticles was designed and tested. While direct aggregation forms an inter-particle linkagefrom only one target DNA strand, catalytic aggregation forms multiple linkages from a single target DNA strand. Gold nanoparticles were functionalized with thiol-modified DNA strands capable of undergoing hybridization chain reactions. The changes in their absorption spectra were measured at different times and target concentrations and compared against direct aggregation. Catalytic aggregation showed a multifold increase in sensitivity at low target concentrations when compared to direct aggregation. Gelelectrophoresis was performed to compare DNA hybridization reactions …

Multiscaffold Dna Origami Nanoparticle Waveguides, William P. Klein, Charles N. Schmidt, Blake Rapp, Sadao Takabayashi, William B. Knowlton, Jeunghoon Lee, Bernard Yurke, William L. Hughes, Elton Graugnard, Wan Kuang

Electrical and Computer Engineering Faculty Publications and Presentations

DNA origami templated self-assembly has shown its potential in creating rationally designed nanophotonic devices in a parallel and repeatable manner. In this investigation, we employ a multiscaffold DNA origami approach to fabricate linear waveguides of 10 nm diameter gold nanoparticles. This approach provides independent control over nanoparticle separation and spatial arrangement. The waveguides were characterized using atomic force microscopy and far-field polarization spectroscopy. This work provides a path toward large-scale plasmonic circuitry.

Forensic Analysis Of Whatsapp On Android Smartphones, Neha S. Thakur

LSU New Orleans Theses and Dissertations

Android forensics has evolved over time offering significant opportunities and exciting challenges. On one hand, being an open source platform Android is giving developers the freedom to contribute to the rapid growth of the Android market whereas on the other hand Android users may not be aware of the security and privacy implications of installing these applications on their phones. Users may assume that a password-locked device protects their personal information, but applications may retain private information on devices, in ways that users might not anticipate. In this thesis we will be concentrating on one such application called 'WhatsApp', a …

An Investigation Of The Impact Of Requirements Engineering Skills On Project Success, Cynthia Atkins

Electronic Theses and Dissertations

A survey of project managers and requirements engineers was conducted to determine what skills, qualifications, and experiences were associated with project success. Survey results indicated that projects using Joint Application Development (JAD) sessions, use cases, and prototypes to engineer requirements were most successful. Other indicators of project success, according to participants, included an adequate allotment of time for requirements engineering—at least 15% of a project's time—and the use of project managers and requirements engineers with professional work experience. In particular, data indicated that Project Managers with at least five years of experience in Information Technology resulted in more successful projects.

Human Motion Analysis Based On Sequential Modeling Of Radar Signal And Stereo Image Features, Meng Wu

Electronic Theses and Dissertations

Falls are one of the greatest threats to elderly health in their daily living routines and activities. Therefore, it is very important to detect falls of an elderly in a timely and accurate manner, so that immediate response and proper care can be provided, by sending fall alarms to caregivers.

Radar is an effective non-intrusive sensing modality which is well suited for this purpose, which can detect human motions in all types of environments, penetrate walls and fabrics, preserve privacy, and is insensitive to lighting conditions. Micro-Doppler features are utilized in radar signal corresponding to human body motions and gait …

Multi-Level Parallelism For Incompressible Flow Computations On Gpu Clusters, Dana A. Jacobsen, Inanc Senocak

Mechanical and Biomedical Engineering Faculty Publications and Presentations

We investigate multi-level parallelism on GPU clusters with MPI-CUDA and hybrid MPI-OpenMP-CUDA parallel implementations, in which all computations are done on the GPU using CUDA. We explore efficiency and scalability of incompressible flow computations using up to 256 GPUs on a problem with approximately 17.2 billion cells. Our work addresses some of the unique issues faced when merging fine-grain parallelism on the GPU using CUDA with coarse-grain parallelism that use either MPI or MPI-OpenMP for communications. We present three different strategies to overlap computations with communications, and systematically assess their impact on parallel performance on two different GPU clusters. Our …

A Large Scale Distributed Syntactic, Semantic And Lexical Language Model For Machine Translation, Ming Tan

Browse all Theses and Dissertations

The n-gram model is the most widely used language model (LM) in statistical machine translation system, due to its simplicity and scalability. However, it only encodes the local lexical relation between adjacent words and clearly ignores the rich syntactic and semantic structures of the natural languages. Attempting to increase the order of an n-gram to describe longer range dependencies in natural language immediately runs into the curse of dimensionality. Although previous researches tried to increase the order of n-gram on a large corpus, they did not see obvious improvement beyond 6-gram. Meanwhile, other LMs, such as syntactic language models and …

Toward Large-Scale Agent Guidance In An Urban Taxi Service, Agussurja Lucas, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

Empty taxi cruising represents a wastage of resources in the context of urban taxi services. In this work, we seek to minimize such wastage. An analysis of a large trace of taxi operations reveals that the services’ inefficiency is caused by drivers’ greedy cruising behavior. We model the existing system as a continuous time Markov chain. To address the problem, we propose that each taxi be equipped with an intelligent agent that will guide the driver when cruising for passengers. Then, drawing from AI literature on multiagent planning, we explore two possible ways to compute such guidance. The first formulation …

College Of Engineering Graduate Celebration 2012 Announcement, University Of Nevada, Las Vegas

College of Engineering: Graduate Celebration Programs

The Howard R. Hughes College of Engineering Graduate Celebration is an event that recognizes the scholarly work of our engineering and computer science graduate students within the college. The target audience includes undergraduate students, graduate students, college faculty and staff, and the campus community as well as local and regional stakeholders. The objective of the event is to promote and publicize the research activities of the College of Engineering and to inform our stakeholders of our students’ achievements.

The Android Powwow Invitation Application, Jason Stewart

Computer Science and Software Engineering

No abstract provided.

Linked Open Data Alignment & Querying, Prateek Jain

Browse all Theses and Dissertations

The recent emergence of the "Linked Data" approach for publishing data represents a major step forward in realizing the original vision of a web that can "understand and satisfy the requests of people and machines to use the web content" i.e. the Semantic Web. This new approach has resulted in the Linked Open Data (LOD) Cloud, which includes more than 295 large datasets contributed by experts belonging to diverse communities such as geography, entertainment, and life sciences. However, the current interlinks between datasets in the LOD Cloud, as we will illustrate,are too shallow to realize much of the benefits promised. …

Clustering Educational Digital Library Usage Data: Comparisons Of Latent Class Analysis And K-Means Algorithms, Beijie Xu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

There are common pitfalls and neglected areas when using clustering approaches to solve educational problems. A clustering algorithm is often used without the choice being justified. Few comparisons between a selected algorithm and a competing algorithm are presented, and results are presented without validation. Lastly, few studies fully utilize data provided in an educational environment to evaluate their findings. In response to these problems, this thesis describes a rigorous study comparing two clustering algorithms in the context of an educational digital library service, called the Instructional Architect.

First, a detailed description of the chosen clustering algorithm, namely, latent class analysis …

Reconfigurable Systems: A Potential Solution To The Von Neumann Bottleneck, Damian L. Miller

Senior Honors Theses

The difficulty of overcoming the disparity between processor speeds and data access speeds, a condition known as the von Neumann bottleneck, has been a source of consternation for computer hardware developers for many years.  Although a number of temporary solutions have been proposed and implemented in modern machines, these solutions have only managed to treat the major symptoms, rather than solve the root problem.  As the number of transistors on a chip roughly doubles every two years, the von Neumann bottleneck has continued to tighten in spite of these solutions, prompting some computer hardware professionals to advocate a paradigm shift …

Simulation, Application, And Resilience Of An Organic Neuromorphic Architecture, Made With Organic Bistable Devices And Organic Field Effect Transistors, Robert A. Nawrocki

Electronic Theses and Dissertations

This thesis presents work done simulating a type of organic neuromorphic architecture, modeled after Artificial Neural Network, and termed Synthetic Neural Network, or SNN. The first major contribution of this thesis is development of a single-transistor-single-organic-bistable-device-per-input circuit that approximates behavior of an artificial neuron. The efficacy of this design is validated by comparing the behavior of a single synthetic neuron to that of an artificial neuron as well as two examples involving a network of synthetic neurons. The analysis utilizes electrical characteristics of polymer electronic elements, namely Organic Bistable Device and Organic Field Effect Transistor, created in the laboratory at …

Programmable Periodicity Of Quantum Dot Arrays With Dna Origami Nanotubes, Hieu Bui, Craig Onodera, Carson Kidwell, Yerpeng Tan, Elton Graugnard, Wan Kuang, Jeunghoon Lee, William B. Knowlton, Bernard Yurke, William L. Hughes

Materials Science and Engineering Faculty Publications and Presentations

To fabricate quantum dot arrays with programmable periodicity, functionalized DNA origami nanotubes were developed. Selected DNA staple strands were biotin-labeled to form periodic binding sites for streptavidin-conjugated quantum dots. Successful formation of arrays with periods of 43 and 71 nm demonstrates precise, programmable, large-scale nanoparticle patterning; however, limitations in array periodicity were also observed. Statistical analysis of AFM images revealed evidence for steric hindrance or site bridging that limited the minimum array periodicity.

Limitations Of Poole–Frenkel Conduction In Bilayer Hfo2/Sio2 Mos Devices, Richard G. Southwick Iii, Justin Reed, Christopher Buu, Ross Butler, Gennadi Bersuker, William B. Knowlton

Materials Science and Engineering Faculty Publications and Presentations

The gate leakage current of metal–oxide– semiconductors (MOSs) composed of hafnium oxide (HfO₂) exhibits temperature dependence, which is usually attributed to the standard Poole–Frenkel (P–F) transport model. However, the reported magnitudes of the trap barrier height vary significantly. This paper explores the fundamental challenges associated with applying the P–F model to describe transport in HfO₂/SiO₂ bilayers in n/p MOS field-effect transistors composed of 3- and 5-nm HfO₂ on 1.1-nm SiO₂ dielectric stacks. The extracted P–F trap barrier height is shown to be dependent on several variables including the following: the temperature range, method …

Recent Advances In High Density Area Array Interconnect Bonding For 3d Integration, J. M. Lannon, J., C. Gregory, M. Lueck, A. Huffman, D. Temple, Amy J. Moll, William B. Knowlton

Materials Science and Engineering Faculty Publications and Presentations

The demand for more complex and multifunctional micro systems with enhanced performance characteristics for military applications is driving the electronics industry toward the use of best-of-breed materials and device technologies. Threedimensional (3-D) integration provides a way to build complex microsystems through bonding and interconnection of individually optimized device layers without compromising system performance and fabrication yield. Bonding of device layers can be achieved through polymer bonding or metal-metal interconnect bonding with a number of metalmetal systems. RTI has been investigating and characterizing Cu-Cu and CulSn-Cu processes for high density area array imaging applications, demonstrating high yield bonding between sub-I5 11m …

2x1d Image Registration And Comparison, Geng Zheng, Elisa H. Barney Smith, Nader Rafla, Tim Andersen

Electrical and Computer Engineering Faculty Publications and Presentations

This paper presents a novel 2x1D phase correlation based image registration method for verification of printer emulator output. The method combines the basic phase correlation technique and a modified 2x1D version of it to achieve both high speed and high accuracy. The proposed method has been implemented and tested using images generated by printer emulators. Over 97% of the image pairs were registered correctly, accurately dealing with diverse images with large translations and image cropping.

On The Thermal Activation Of Negative Bias Temperature Instability, Richard G. Southwick Iii, William B. Knowlton, Ben Kaczer, Tibor Grasser

Materials Science and Engineering Faculty Publications and Presentations

The temperature dependence of negative bias temperature instability (NBTI) is investigated on 2.0nm SiO₂ devices from temperatures ranging from 300K down to 6K with a measurement window of ~12ms to 100s. Results indicate that classic NBTI degradation is observed down to ~200K and rarely observed at temperatures below 140K in the experimental window. Since experimental results show the charge trapping component contributing to NBTI is thermally activated, the results cannot be explained with the conventionally employed elastic tunneling theory. A new mechanism is observed at temperatures below 200K where device performance during stress conditions improves rather than degrades with …

Chip-Scale Nanophotonic Chemical And Biological Sensors Using Cmos Process, Lincoln Bollschweiler, Alex English, R. Jacob Baker, Wan Kuang, Zi-Chang Chang, Ming-Hsiung Shih, William Knowlton

Electrical and Computer Engineering Faculty Publications and Presentations

A monolithic integrated chip-scale surface plasmon resonance (SPR) sensor is demonstrated. The device consists of a pn photodiode covered with a periodic modified thin metal film whose lattice constant is on the order of the wavelength of light. The device performs real-time measurement of resonant wavelengths of enhanced optical transmission due to surface plasmon resonance, which are influenced by the presence of chemical or biological materials at the device’s surface.

A Computer Science Approach To Identify And Classify Hyperactivated Spermatozoa, Norbert Kaula

Electronic Theses and Dissertations

Effective Assisted Reproductive Technology (ART) relies in part upon accurate but easily conducted measurements of sperm motion parameters. Several established methods are widely used to assess possible reasons for male infertility, in human and veterinary Andrology clinics. Computer-assisted sperm analysis (CASA) devices quantitatively assess sperm motion parameters, which have been defined by the World Health Organization, and include the percentage of motile cells in a sample and the motion characteristics of individual cells, such as curvilinear velocity (VCL), average path velocity (VAP) and straight line velocity (VSL). However, CASA analyses fail to define hyperactive sperm motility or determine the prevalence …

Quantifying Network Reliability Through Finding An Upper Bound For Graph Integrity Using Graph Coloring, Ian Burchett

Mahurin Honors College Capstone Experience/Thesis Projects

Integrity of a graph is defined as 𝐺 = 𝑚𝑖𝑛𝑆⊆𝑉(𝐺){ 𝑆 + 𝑚 𝐺 − 𝑆 } , where G is a graph with vertex set V and m(G-S) denotes the order of the largest component of G - S. This provides an upper estimate of the integrity of the given graph. Using graph coloring, the color sequence of the graph can be generated, with the leading term being the largest component of the graph, the maximal independent set. The determination of the set is too time intensive to be feasible for moderate to large graphs, since there is no …

New Computational Approaches For Multiple Rna Alignment And Rna Search, Daniel Deblasio

Electronic Theses and Dissertations

In this thesis we explore the the theory and history behind RNA alignment. Normal sequence alignments as studied by computer scientists can be completed in O(n2) time in the naive case. The process involves taking two input sequences and finding the list of edits that can transform one sequence into the other. This process is applied to biology in many forms, such as the creation of multiple alignments and the search of genomic sequences. When you take into account the RNA sequence structure the problem becomes even harder. Multiple RNA structure alignment is particularly challenging because covarying mutations make sequence …