Engineering Commons^™

Department Of Biological Systems Engineering Newsletter, Fall 2015

BSE Department Magazine

No abstract provided.

A Computational Translation Of The Phaistos Disk, Peter Revesz

School of Computing: Conference and Workshop Papers

For over a century the text of the Phaistos Disk remained an enigma without a convincing translation. This paper presents a novel semi-automatic translation method that uses for the first time a recently discovered connection between the Phaistos Disk symbols and other ancient scripts, including the Old Hungarian alphabet. The connection between the Phaistos Disk script and the Old Hungarian alphabet suggested the possibility that the Phaistos Disk language may be related to Proto-Finno-Ugric, Proto-Ugric, or Proto-Hungarian. Using words and suffixes from those languages, it is possible to translate the Phaistos Disk text as an ancient sun hymn, possibly connected …

A Computational Model Of The Spread Of Ancient Human Populations Based On Mitochondrial Dna Samples, Peter Revesz

School of Computing: Conference and Workshop Papers

The extraction of mitochondrial DNA (mtDNA) from ancient human population samples provides important data for the reconstruction of population influences, spread and evolution from the Neolithic to the present. This paper presents a mtDNA-based similarity measure between pairs of human populations and a computational model for the evolution of human populations. In a computational experiment, the paper studies the mtDNA information from five Neolithic and Bronze Age populations, namely the Andronovo, the Bell Beaker, the Minoan, the Rössen and the Únětice populations. In the past these populations were identified as separate cultural groups based on geographic location, age and the …

A Computational Study Of The Evolution Of Cretan And Related Scripts, Peter Revesz

School of Computing: Conference and Workshop Papers

Crete was the birthplace of several ancient writings, including the Cretan Hieroglyphs, the Linear A and the Linear B scripts. Out of these three only Linear B is deciphered. The sound values of the Cretan Hieroglyph and the Linear A symbols are unknown and attempts to reconstruct them based on Linear B have not been fruitful. In this paper, we compare the ancient Cretan scripts with four other Mediterranean and Black Sea scripts, namely Phoenician, South Arabic, Greek and Old Hungarian. We provide a computational study of the evolution of the three Cretan and four other scripts. This study encompasses …

Evaluation Of Concrete Grinding Residue (Cgr) Slurry Application On Vegetation And Soil Responses Along Nebraska State Highway 31, Martha Mamo, Dennis L. Mccallister, Walter H. Schacht

Nebraska Department of Transportation: Research Reports

No abstract provided.

Development And Evaluation Of Weak-Post W-Beam Guardrail In Mow Strips, Scott K. Rosenbaugh, Ronald K. Faller, Karla A. Lechtenberg, James C. Holloway

Nebraska Department of Transportation: Research Reports

The objective of this study was to adapt and evaluate a weak-post, W-beam guardrail system for use within mow strips and other pavements. The weak-post guardrail system was originally designed as the MGS bridge rail and has also been adapted for use on culverts. It was envisioned that the weak-post design would absorb the impact forces and prevent damage to the mow strips, thereby minimizing maintenance and repair costs.

Evaluation of the weak posts in mow strips began with three rounds of dynamic bogie testing. Round 1 of bogie testing showed that 4-in. (102-mm) thick concrete would sustain only minor …

Mutations Of Adjacent Amino Acid Pairs Are Not Always Independent, Jyotsna Ramanan, Peter Revesz

School of Computing: Conference and Workshop Papers

Evolutionary studies usually assume that the genetic mutations are independent of each other. This paper tests the independence hypothesis for genetic mutations with regard to protein coding regions. According to the new experimental results the independence assumption generally holds, but there are certain exceptions. In particular, the coding regions that represent two adjacent amino acids seem to change in ways that sometimes deviate significantly from the expected theoretical probability under the independence assumption.

A-Maze-D: Advanced Maze Development Kit Using Constraint Databases, Shruti Daggumarti, Peter Revesz, Corey Svehla

School of Computing: Conference and Workshop Papers

In this paper, we describe the A-Maze-D system which shows that constraint databases can be applied conveniently and efficiently to the design of maze games. A-Maze-D provides a versatile set of features by a combination of a MATLAB library and the MLPQ constraint database system. A-Maze-D is the first system that uses constraint databases to build maze games and opens new ideas in video game development.

Coupled Auto-Associative Neural Networks For Heterogeneous Face Recognition, Benjamin S. Riggan, Christopher Reale, Nasser M. Nasrabadi

Department of Electrical and Computer Engineering: Faculty Publications

Several models have been previously suggested for learning correlated representations between source and target modalities. In this paper, we propose a novel coupled autoassociative neural network for learning a target-to-source image representation for heterogenous face recognition. This coupled network is unique, because a cross-modal transformation is learned by forcing the hidden units (latent features) of two neural networks to be as similar as possible, while simultaneously preserving information from the input. The effectiveness of this model is demonstrated using multiple existing heterogeneous face recognition databases. Moreover, the empirical results show that the learned image representation—common latent features—by the coupled auto-associative …

Conceptual Development Of An Impact-Attenuation System For Intersecting Roadways, Joseph G. Putjenter, Robert W. Bielenberg, Ronald K. Faller, John D. Reid

Nebraska Department of Transportation: Research Reports

Longitudinal barriers are commonly used to shield hazards, including stiff bridge rail ends and slopes. In some locations, a secondary roadway intersects the primary roadway within the guardrail’s length-of-need (LON). Some intersections may have as little as 15 ft (4.6 m) between the intersection and beginning of the bridge railing, which require short-radius guardrail systems. One short-radius guardrail system has passed several crash tests under AASHTO Manual for Assessing Safety Hardware (MASH) standards.

Site conditions provided by the Nebraska Department of Roads were used to determine the constraints for a new safety treatment for intersecting roadways and include intersection radii, …

Mgs Dynamic Deflections And Working Widths At Lower Speeds, Nicholas A. Weiland, Cody S. Stolle, John D. Reid, Ronald K. Faller, Robert W. Bielenberg, Karla A. Lechtenberg

Nebraska Department of Transportation: Research Reports

The Midwest Guardrail System (MGS) has been full-scale crash tested in many configurations, including installations adjacent to slopes, with different types of wood posts, with and without blockouts, for culvert and bridge applications, and at high flare rates. Although the performance of the MGS and the dynamic deflection and working width of the barrier have been examined, little is known about the dynamic deflection and working width of the MGS when impacted at lower speeds. The MGS is a relatively low-cost barrier, and the Test Level 3 (TL-3) version could be installed for TL-2 and TL-1 applications. The barrier is …

Bioinformatics Approaches To Single-Cell Analysis In Developmental Biology, Dicle Yalcin, Zeynep M. Hakguder, Hasan H. Otu

Department of Electrical and Computer Engineering: Faculty Publications

Individual cells within the same population show various degrees of heterogeneity, which may be better handled with single-cell analysis to address biological and clinical questions. Single-cell analysis is especially important in developmental biology as subtle spatial and temporal differences in cells have significant associations with cell fate decisions during differentiation and with the description of a particular state of a cell exhibiting an aberrant phenotype. Biotechnological advances, especially in the area of microfluidics, have led to a robust, massively parallel and multi-dimensional capturing, sorting, and lysis of single-cells and amplification of related macromolecules, which have enabled the use of imaging …

Investigation Of Bovine Serum Albumin (Bsa) Attachment Onto Self-Assembled Monolayers (Sams) Using Combinatorial Quartz Crystal Microbalance With Dissipation (Qcm-D) And Spectroscopic Ellipsometry (Se), Hanh T.M. Phan, Shannon L. Bartelt-Hunt, Keith B. Rodenhausen, Mathias Schubert, Jason C. Bartz

Department of Civil and Environmental Engineering: Faculty Publications

Understanding protein adsorption kinetics to surfaces is of importance for various environmental and biomedical applications. Adsorption of bovine serum albumin to various selfassembled monolayer surfaces including neutral and charged hydrophilic and hydrophobic surfaces was investigated using in-situ combinatorial quartz crystal microbalance with dissipation and spectroscopic ellipsometry. Adsorption of bovine serum albumin varied as a function of surface properties, bovine serum albumin concentration and pH value. Charged surfaces exhibited a greater quantity of bovine serum albumin adsorption, a larger bovine serum albumin layer thickness, and increased density of bovine serum albumin protein compared to neutral surfaces at neutral pH value. The …

System And Method For Estimating States Of Spacecraft In Planet-Moon Environment, Piyush Grover

Department of Mechanical and Materials Engineering: Faculty Publications

A method estimates a state of a spacecraft in a planet-moon environment by executing iteratively a particle filter. The particle filter comprising integrates individually states of each particle of the particle filter according to a probability-evolution equation using a model of the state of the spacecraft represented as a planar circular restricted three-body problem and determines a prior probability of each particle as a previous posterior probability of a corresponding particle during a previous iteration. A joint probability distribution of the state of the spacecraft is determines using the states of each particle and the prior probabilities of each particle …

Performance Characteristics Of Posts Embedded In Soil, Brandt M. Humphrey, Karla A. Lechtenberg, John D. Reid, Ronald K. Faller, James C. Holloway

Nebraska Department of Transportation: Research Reports

The primary objective of this research study was to determine the post-soil impact reaction of W6x8.5 (W150x12.6) steel posts and 6-in. x 8-in. (152-mm x 203-mm) Southern Yellow Pine (SYP) posts, specifically along the weak axis. Five bogie tests were conducted on W6x8.5 (W150x12.6) A992 steel posts with a length of 72 in. with embedment depths ranging between of 24 and 40 in. (610 and 1,016 mm). Four bogies tests were conducted on 6-in. x 8-in. (152 mm x 203 mm) SYP posts embedded at depths ranging between 30 and 40 in. (735 and 1,016 mm). The target impact conditions …

Dietary Strategies For Mitigation Of Methane Production By Growing And Finishing Cattle, Anna C. Pesta

Department of Animal Science: Dissertations, Theses, and Student Research

Interest in reducing methane (CH₄) emissions by cattle has increased recently. Loss of feed energy as CH₄ represents both an environmental concern and an energetic loss to the animal. Manipulation of dietary composition has proven to be an effective mitigation strategy. Experiments were conducted to evaluate the effect of several dietary characteristics on CH₄ production in growing and finishing cattle, and to develop a novel, non-invasive method for quantifying emissions from animals in a production setting. Short-term gaseous emissions of CH₄ and carbon dioxide (CO₂) were measured and the CH₄:CO_{2 …}

An Estimate Of The Second-Order In-Plane Acceleration Sensitivity Of A Y-Cut Quartz Thickness-Shear Resonator, Huijing He, Jiashi Yang, John A. Kosinski

Department of Mechanical and Materials Engineering: Faculty Publications

We perform a theoretical analysis of the second-order in-plane acceleration sensitivity of a Y-cut quartz thick-ness-shear mode resonator. The second-order nonlinear theory of elasticity for anisotropic crystals is used to determine the biasing fields in the resonator under in-plane acceleration. The acceleration-induced frequency shift is determined from a per-turbation analysis based on the plate equations for small-amplitude vibrations superposed on a finite bias. We show that, whereas the first-order acceleration-induced frequency shift is zero for a structurally symmetric resonator under in-plane ac-celeration, the second-order frequency shift is nonzero and is quadratic in the acceleration. As the fourth-order nonlinear elastic constants …

Evaluate Students’ Learning Effectiveness Of Hvac System Using 3d Game Animation, Lalitha Devi Nandam

Department of Construction Engineering and Management: Dissertations, Theses, and Student Research

An important skill required for students in Construction Engineering and Architecture is to understand what the major components are and how the whole system and its components function. Students typically learn to understand HVAC equipment by reviewing two-dimensional (2D) CAD drawings, images and site visits. With latest developments in 3D game engines for facilitating interactive learning, it is now possible for students to experience three-dimensional (3D) environments of HVAC systems. While this technology is still at an early stage in learning application, it has the potential to significantly enhance the capability of students to study, comprehend and gain experience designing …

Three-Dimensional Scaffolds Of Graphene, Carbon Nanotubes And Transition-Metal Oxides For Applications In Electronics, Sensors And Energy Storage, Gilbert N. Mbah

Department of Chemistry: Dissertations, Theses, and Student Research

Electronics, sensors and energy storage devices are the new waves behind economic development, security and communication¹. Engineering small sizes of electronic, sensors and energy storage devices is the hurdle limiting efficient, portable and vast applications of Nano-devices for economic, security and communication advancement². Silicon the major material used in transistors has approached its limit to fabricated Nano-devices³. The discovery of free standing, one atomic layer thick and two-dimensional graphene sheets with high conductivity, inert, high specific surface area, stable and high tensile strength material in 2004 has shown capabilities to replaced silicon in electronics, …

Breast Cancer/Stromal Cells Coculture On Polyelectrolyte Films Emulates Tumor Stages And Mirna Profiles Of Clinical Samples, Amita Daverey, Karleen M. Brown, Srivatsan Kidambi

Department of Chemical and Biomolecular Engineering: Faculty Publications

In this study, we demonstrate a method for controlling breast cancer cells adhesion on polyelectrolyte multilayer (PEM) films without the aid of adhesive proteins/ ligands to study the role of tumor and stromal cell interaction on cancer biology. Numerous studies have explored engineering coculture of tumor and stromal cells predominantly using transwell coculture of stromal cells cultured onto coverslips that were subsequently added to tumor cell cultures. However, these systems imposed an artificial boundary that precluded cell−cell interactions. To our knowledge, this is the first demonstration of patterned coculture of tumor cells and stromal cells that captures the temporal changes …

Quantification Of Variable Rate Irrigation Benefits And Spatial Variability In Root Zone Water Holding Capacity, Tsz Him Lo

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Variable rate irrigation (VRI) investment decisions require field-specific knowledge of benefits. The objective of this research was to help producers and consultants consider and quantify potential benefits of VRI. First, a conceptual model was developed for evaluating the public and/or private gain from adopting VRI where irrigation water supply is non-restrictive. Potential benefits were classified into three categories and were attributed to ten reasons. In the Central Plains at current prices, a small improvement in corn (maize) yield would make a large contribution to VRI profitability. Second, the potential irrigation withdrawal reduction from adapting VRI to spatial heterogeneity of root …

Optical Anisotropy Of Porous Polymer Film With Inverse Slanted Nanocolumnar Structure Revealed Via Generalized Spectroscopic Ellipsometry, Dan Liang, Derek Sekora, Charles Rice, Eva Schubert, Mathias Schubert

Department of Electrical and Computer Engineering: Faculty Publications

We use generalized spectroscopic ellipsometry to characterize the biaxial optical properties of porous polymer and slanted nanocolumnar template thin films. The porous polymer with inverse columnar structure was prepared via infiltrating polymer into the voids of the slanted nanocolumnar film and selectively removing the column material (cobalt). The anisotropic Bruggeman effective medium approximation was employed to analyze the ellipsometry data of the porous polymer film and nanocolumnar template. The classification and structure of optical anisotropy are found to be identical for both samples. The interchangeable optical behaviors between two complementary structures are attributed to the equivalency in their anisotropic polarizabilities.

Dynamic Characteristics And Seismic Response Analysis Of A Long-Span Steel-Box Basket-Handle Railway Arch Bridge, Xuhui He, Biao Wei, Yunfeng Zou, Dongyang Hu, Daniel G. Linzell

Department of Civil and Environmental Engineering: Faculty Publications

The inside oblique angle between the vertical plane and the arch rib has been shown to be one of the main factors influencing dynamic properties of long-span steel-box basket-handle arch bridges. Details related to the extent, that the inside oblique angle influenced the dynamic characteristics and the seismic response of the arch bridge under the combined longitudinal and vertical seismic excitation and under the combined lateral and vertical seismic excitation, were reported herein. Four oblique angles (0°, 3°, 4.8°, and 6°) were selected based on the arch ribs height and bridge deck width. Findings suggested that a larger inside oblique …

A Sensorless Haptic Interface For Robotic Minimally Invasive Surgery, Baoliang Zhao

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

Robotic minimally invasive surgery (R-MIS) has gained in popularity due to its advantages of improving the accuracy and dexterity of surgical interventions while minimizing trauma to the patient. However, because of the loss of direct contact with the surgical site, the surgeon cannot perceive tactile information, which may adversely affect surgical efficiency and/or efficacy. The lack of haptic feedback is regarded as a limiting factor in existing R-MIS technology.

To solve this problem, researchers have incorporated force sensors on the surgical tools to measure the tool-tissue interaction forces, and reproduce these forces at the surgeon console. However, the employment of …

Fundamental Problems In Porous Materials: Experiments And Computer Simulation, Zhanping Xu

Department of Engineering Mechanics: Dissertations, Theses, and Student Research

Porous materials have attracted massive scientific and technological interest because of their extremely high surface-to-volume ratio, molecular tunability in construction, and surface-based applications. Through my PhD work, porous materials were engineered to meet the design in selective binding, self-healing, and energy damping. For example, crystalline MOFs with pore size spanning from a few angstroms to a couple of nanometers were chemically engineered to show 120 times more efficiency in binding of large molecules. In addition, we found building blocks released from those crystals can be further patched back through a healing process at ambient and low temperatures down to -56 …

Conservation Of Energy Using Variable Frequency Drive For Center Pivot Irrigation Systems In Nebraska, Dilshad Brar

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

The study introduces a novel approach to lower the operating pivot point pressure by varying the motor speed with the help of variable frequency drive (VFD) in contrast to the commonly used fixed speed approach. By varying the speed of motor, the required minimum pivot point pressure can be provided at any required flow rate. This was investigated through a GIS-assisted simulation on 100 randomly selected pivots located in 10 Nebraska counties using high resolution Digital Elevation Model (DEM) datasets. Center pivot irrigation systems are usually equipped with corner watering attachments like end guns and corner extensions to irrigate additional …

Efficiency Enhancement In Solution Processed Organic And Organic–Inorganic Hybrid Perovskite Solar Cells, Zhengguo Xiao

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

Solution processed thin film photovoltaic devices are one of the most promising renewable energy sources. Organic solar cells have been intensively studied due to their advantages of light-weight, flexibility and low-cost materials and manufacturing. The organic-inorganic hybrid perovskite materials have recently shown great potential application in solar cells. The PCE increased dramatically from 3.8% in 2009 to a certified efficiency of 20.1% in 2014. In this dissertation, we focus on the efficiency enhancement for solution processed organic and organic-inorganic solar cells.

In Chapter 2, I demonstrated that the crystallinity of the ferroelectric polymer P(VDF-TrFE) at the organic active layer/ electrode …

Land Use And Water And Soil Management Practices Impacts On Potential Groundwater Recharge In Loess Regions Of South Central Nebraska, Gustavo Bosch-Rubia

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Sustainability of agro-ecosystems must consider land use and water and soil management effects on groundwater recharge. Water flow beneath the plant root zone through the intermediate vadose zone determines potential groundwater recharge. Different land uses, water and soil management practices control deep percolation as a result of changes on evapotranspiration and infiltration. This study of the impact of surface activities on deep percolation was conducted at six locations across Nebraska: Two center-pivot irrigated no-till planting systems fields were compared with one tilled center-pivot irrigated field, a furrow irrigated field with multiple tillage treatments, an eco-fallow dryland farming system, and a …

Simulation And Validation Of Radio Frequency Heating Of Shell Eggs, Soon Kiat Lau

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Finite element models were developed with the purpose of finding an optimal radio frequency (RF) heating setup for pasteurizing shell eggs. Material properties of the yolk, albumen, and shell were measured and fitted into equations that were used as inputs for the model. When the egg was heated by itself, heating tend to be focused at the air cell to result in a “coagulation ring.” The focused heating near the air cell of the egg prevented satisfactory pasteurization of the egg, but deeper analysis of the simulation results offered a new perspective on how non-uniform RF heating could occur in …

Economic And Sustainability Aspects Of Chemical Process Industries By Thermodynamics Analysis, Mahdi H. Alhajji

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Economics and sustainability improvements of some chemical processes are assessed after the retrofits suggested by thermodynamic analysis and energy analyzer. The main objective is to explore the scope of reducing the energy consumption and CO₂ emissions for a more sustainable operation in chemical process industries. Thermodynamic analysis is carried out by applying the thermal analysis capability of ‘Column Targeting Tool’ to address the ‘energy intensity,’ and/or the ‘Energy Analyzer’ to design and improve the performance of the heat exchanger network system for process heat integration. CTT is based on the ‘Practical Near-Minimum Thermodynamic Condition’ representing a close to practical …