Engineering Commons^™

Ls301 Fluorescence-Guided Photodynamic Therapy Of Brain Cancer Using Ppix Photosensitizer, Haini Zhang

McKelvey School of Engineering Theses & Dissertations

Incomplete brain tumor removal always causes neurologic deficit, disease recurrence and high mortality. Protoporphyrin IX (PpIX) accumulated in glioma cells with exogenous 5-aminolevulinic acid (5-ALA) serves as contrast agent for fluorescence-guided surgery and as well as acts as a photosensitizer for photodynamic therapy (PDT). However, the accurate tumor delineation using PpIX is limited by autofluorescence and superficial penetration depth. LS301 is a tumor-targeted near-infrared (NIR) contrast agent developed in our lab which allows deeper tumor imaging and avoids autofluorescence. My project aims to investigate whether LS301 can improve PpIX mediated PDT and tumor removal surgery. We have demonstrated co-localization of …

Locating Unmanned Aerial Vehicles (Uavs), Ali Ghubaish

McKelvey School of Engineering Theses & Dissertations

Despite the popularity and usefulness of Unmanned Aerial Vehicles (UAVs) or drones, they are not allowed to fly in some areas without prior permission from the Federal Aviation Administration (FAA). However, many incidents of UAVs breaching such restrictions have been reported. A UAV location system can help the law enforcement to be alerted and can prevent UAVs breaching any restricted area without permission. This master thesis proposes a UAV location system where each UAV has a unique identification tag. The method consists of two stages: distance and location estimation. We compared distance estimation using three different methods: Time of Arrival …

Application Of Pca To Cardiac Optical Mapping, Louis Woodhams

McKelvey School of Engineering Theses & Dissertations

Structural remodeling of the heart due to pathologies such as hypertension and myocardial infarction leads to the appearance of myofibroblasts, a phenotype largely absent in physiologic myocardium. While myofibroblasts are responsible for wound healing and structural repair of damaged myocardium, they are thought to have deleterious effects on electrical and mechanical properties of the heart. Understanding these effects is critical to developing effective treatments, and has motivated the development of a series of in vitro engineered heart tissues and cardiomyocyte-myofibroblast co-cultures whose mechanical and electrophysiological function can be deduced from video analysis. Electrophysiological properties are evident from changes in intensity …

Comparison Of The Bi-Directional Performance Of Micro-Channel Sieve And Thin-Film Time Peripheral Nerve Interfaces, Robert Coker

McKelvey School of Engineering Theses & Dissertations

Sophisticated motorized prosthetic limbs contain multiple degrees of freedom of motion as well as embedded pressure and angle transducers to provide sensory feedback in amputees. Although several central neural recording and stimulation modalities exist for both controlling these motions and providing sensory feedback from a prosthetic limb, directly interfacing the peripheral nerves which originally innervated the limb has many advantages. A difficulty with this bi-directional approach is that electrically stimulating axons to provide haptic feedback creates stimulation artifacts at neighboring recording sites within the nerve that are several orders of magnitude larger than the electroneurogram used for control. In this …

System Characterizations And Optimized Reconstruction Methods For Novel X-Ray Imaging, Huifeng Guan

McKelvey School of Engineering Theses & Dissertations

In the past decade there have been many new emerging X-ray based imaging technologies developed for different diagnostic purposes or imaging tasks. However, there exist one or more specific problems that prevent them from being effectively or efficiently employed. In this dissertation, four different novel X-ray based imaging technologies are discussed, including propagation-based phase-contrast (PB-XPC) tomosynthesis, differential X-ray phase-contrast tomography (D-XPCT), projection-based dual-energy computed radiography (DECR), and tetrahedron beam computed tomography (TBCT). System characteristics are analyzed or optimized reconstruction methods are proposed for these imaging modalities. In the first part, we investigated the unique properties of propagation-based phase-contrast imaging technique …

Bio-Inspired Multi-Spectral And Polarization Imaging Sensors For Image-Guided Surgery, Nimrod Missael Garcia

McKelvey School of Engineering Theses & Dissertations

Image-guided surgery (IGS) can enhance cancer treatment by decreasing, and ideally eliminating, positive tumor margins and iatrogenic damage to healthy tissue. Current state-of-the-art near-infrared fluorescence imaging systems are bulky, costly, lack sensitivity under surgical illumination, and lack co-registration accuracy between multimodal images. As a result, an overwhelming majority of physicians still rely on their unaided eyes and palpation as the primary sensing modalities to distinguish cancerous from healthy tissue. In my thesis, I have addressed these challenges in IGC by mimicking the visual systems of several animals to construct low power, compact and highly sensitive multi-spectral and color-polarization sensors. I …

Binding Affinity And Specificity Of Sh2 Domain Interactions In Receptor Tyrosine Kinase Signaling Networks, Tom Ronan

McKelvey School of Engineering Theses & Dissertations

Receptor tyrosine kinase (RTK) signaling mechanisms play a central role in intracellular signaling and control development of multicellular organisms, cell growth, cell migration, and programmed cell death. Dysregulation of these signaling mechanisms results in defects of development and diseases such as cancer. Control of this network relies on the specificity and selectivity of Src Homology 2 (SH2) domain interactions with phosphorylated target peptides. In this work, we review and identify the limitations of current quantitative understanding of SH2 domain interactions, and identify severe limitations in accuracy and availability of SH2 domain interaction data. We propose a framework to address some …

Coupling Of Oxidation-Reduction Reactions Of Chromium, Iron And Manganese: Implications For The Fate And Mobility Of Chromium In Aquatic Environments, Chao Pan

McKelvey School of Engineering Theses & Dissertations

Both within the United States and internationally, hexavalent chromium (Cr(VI)) is a contaminant of concern in drinking water supplies. The U.S. Environmental Protection Agency is considering a Cr(VI)-specific standard. Thus improved technologies for Cr(VI) removal in drinking water are needed. Iron electrocoagulation for Cr(VI) removal was examined at conditions directly relevant to drinking water treatment, and humic acid (HA) affects the performance of electrocoagulation in multiple ways. The success of the chromium treatment or remediation also relies on the stability of the Cr(III)-containing solids with respect to reoxidation under groundwater conditions. Manganese is ubiquitous in aquatic and terrestrial environments, and …

Abiotic- And Biotic-Formation Of Manganese Oxides And Their Fate In Environmental Systems, Haesung Jung

McKelvey School of Engineering Theses & Dissertations

Manganese (hydr)oxide (Mn (hydr)oxide) minerals are ubiquitous in aquatic and terrestrial environments. These minerals have high surface areas and are highly sorptive and redox active. From decades of accumulated knowledge about natural redox cycling, we have found that Mn (hydr)oxides play critical roles as electron donors and acceptors in elemental geochemical cycling and biological metabolisms in nature. Thus, Mn (hydr)oxides have garnered increasing interest to understand natural systems. Considering the variety of redox reactions with Mn (hydr)oxides in nature, it is also expected that there should be diverse pathways to form Mn (hydr)oxides through abiotic and biotic processes. Previous studies …

Image Reconstruction Of The Speed Of Sound And Initial Pressure Distributions In Ultrasound Computed Tomography And Photoacoustic Computed Tomography, Thomas Paul Matthews

McKelvey School of Engineering Theses & Dissertations

Ultrasound computed tomography (USCT) and photoacoustic computed tomography (PACT) are two emerging imaging modalities that have a wide range of potential applications from pre-clinical small animal imaging to cancer screening in human subjects. USCT is typically employed to measure acoustic contrasts, including the speed of sound (SOS) distribution, while PACT typically measures optical contrasts or some related quantity such as the initial pressure distribution. Their complementary contrasts and similar implementations make USCT and PACT a natural fit for a hybrid imaging system. Still, much work remains to realize this promise. First, USCT image reconstruction methods based on the acoustic wave …

Two-Component Hydrogel As Biomimetic Vitreous Substitutes, Sruthi Santhanam

McKelvey School of Engineering Theses & Dissertations

The vitreous humor of the eye is a biological hydrogel principally composed of fibrillary collagen interspersed with semi-flexible polyelectrolyte, hyaluronic acid (HA). Certain pathological conditions necessitate its removal and replacement. Current vitreous substitutes, such as silicone oils and perfluorocarbons, are hydrophobic, do not resemble the properties of the vitreous, and have known complications. An ideal vitreous substitute should have properties of the natural vitreous, perform its functions, and be biocompatible in the eye. Inspired by the structure and composition of the natural vitreous, we used bio-mimicry to develop an injectable two-component hydrogel. The hydrogel is composed of a fibrillary gellan, …

Characterizing Anisotropy In Fibrous Soft Materials By Mr Elastography Of Slow And Fast Shear Waves, John Larson Schmidt

McKelvey School of Engineering Theses & Dissertations

The general objective of this work was to develop experimental methods based on magnetic resonance elastography (MRE) to characterize fibrous soft materials. Mathematical models of tissue biomechanics capable of predicting injury, such as traumatic brain injury (TBI), are of great interest and potential. However, the accuracy of predictions from such models depends on accuracy of the underlying material parameters. This dissertation describes work toward three aims. First, experimental methods were designed to characterize fibrous materials based on a transversely isotropic material model. Second, these methods are applied to characterize the anisotropic properties of white matter brain tissue ex vivo. Third, …

Characterization Of Structural Dynamics Of The Human Head Using Magnetic Resonance Elastography, Andrew Arun Badachhape

McKelvey School of Engineering Theses & Dissertations

In traumatic brain injury (TBI), the skull-brain interface, composed of three meningeal layers: the dura mater, arachnoid mater, and pia mater, along with cerebrospinal fluid (CSF) between the layers, plays a vital role in transmitting motion from the skull to brain tissue. Magnetic resonance elastography (MRE) is a noninvasive imaging modality capable of providing in vivo estimates of tissue motion and material properties. The objective of this work is to augment human and phantom MRE studies to better characterize the mechanical contributions of the skull-brain interface to improve the parameterization and validation of computational models of TBI. Three specific aims …

Development Of In Vitro Drug Screening Platforms Using Human Induced Pluripotent Stem Cell-Derived Cardiovascular Cells, Yosuke Kurokawa

McKelvey School of Engineering Theses & Dissertations

Drug-induced cardiotoxicity is a critical challenge in the development of new drugs. Since the advent of human pluripotent stem cell-derived cardiomyocytes (CMs), researchers have explored ways to utilize these cells for in vitro preclinical drug screening applications. One area of interest is microphysiological systems (i.e. organ-on-a-chip), which aims to create more complex in vitro models of human organ systems, thus improving drug response predictions. In this dissertation, we investigated novel analysis methods and model platforms for detecting drug-induced cardiotoxicity using human induced pluripotent stem cell (iPSC)-derived cardiovascular cells.

First, we utilized human iPSC-derived CMs (iPS-CMs) to establish optical methods of …

System Optimization And Iterative Image Reconstruction In Photoacoustic Computed Tomography For Breast Imaging, Yang Lou

McKelvey School of Engineering Theses & Dissertations

Photoacoustic computed tomography(PACT), also known as optoacoustic tomography (OAT), is an emerging imaging technique that has developed rapidly in recent years. The combination of the high optical contrast and the high acoustic resolution of this hybrid imaging technique makes it a promising candidate for human breast imaging, where conventional imaging techniques including X-ray mammography, B-mode ultrasound, and MRI suffer from low contrast, low specificity for certain breast types, and additional risks related to ionizing radiation. Though significant works have been done to push the frontier of PACT breast imaging, it is still challenging to successfully build a PACT breast imaging …

Identification Of Prognostic Cancer Biomarkers Through The Application Of Rna-Seq Technologies And Bioinformatics, Nathan Wong

McKelvey School of Engineering Theses & Dissertations

MicroRNAs (miRNAs) are short single-stranded RNAs that function as the guide sequence of the post-transcriptional regulatory process known as the RNA-induced silencing complex (RISC), which targets mRNA sequences for degradation through complementary binding to the guide miRNA. Changes in miRNA expression have been reported as correlated with numerous biological processes, including embryonic development, cellular differentiation, and disease manifestation. In the latter case, dysregulation has been observed in response to infection by human papillomavirus (HPV), which has also been established as both oncogenic in cervical cancers and oropharyngeal cancers and favorable for overall patient survival after tumor formation. The identification of …

Reconstruction Algorithms For Novel Joint Imaging Techniques In Pet, Homayoon Ranjbar

McKelvey School of Engineering Theses & Dissertations

Positron emission tomography (PET) is an important functional in vivo imaging modality with many clinical applications. Its enormously wide range of applications has made both research and industry combine it with other imaging modalities such as X-ray computed tomography (CT) or magnetic resonance imaging (MRI). The general purpose of this work is to study two cases in PET where the goal is to perform image reconstruction jointly on two data types.

The first case is the Beta-Gamma image reconstruction. Positron emitting isotopes, such as ¹¹C, ¹³N, and ¹⁸F, can be used to label molecules, and tracers, such …

Extrinsic And Intrinsic Control Of Integrative Processes In Neural Systems, Anirban Nandi

McKelvey School of Engineering Theses & Dissertations

At the simplest dynamical level, neurons can be understood as integrators. That is, neurons accumulate excitation from afferent neurons until, eventually, a threshold is reached and they produce a spike. Here, we consider the control of integrative processes in neural circuits in two contexts. First, we consider the problem of extrinsic neurocontrol, or modulating the spiking activity of neural circuits using stimulation, as is desired in a wide range of neural engineering applications. From a control-theoretic standpoint, such a problem presents several interesting nuances, including discontinuity in the dynamics due to the spiking process, and the technological limitations associated with …

Multi-Scale Studies To Develop A Holistic Understanding Of Solid Fuel Combustion At Residential Scale, Sameer Patel

McKelvey School of Engineering Theses & Dissertations

Nearly 3 billion people rely on solid fuels for their cooking and heating needs, classifying them as “energy poor”. This poverty can be attributed to several factors, including a lack of resources (fuel), inefficient infrastructure (production and distribution), limited purchasing power (poverty), and ill-devised policies. Solid fuels, such as biomass, coal, and dung cakes, are burned in inefficient cookstoves. They generate products of incomplete combustion (PIC), such as CO, particulate matter (PM), and CH4, causing household air pollution (HAP) whose adverse impacts on both health and the environment have been well established.

HAP causes diseases such as chronic obstructive pulmonary …

The Inter-Laminar Shearing Effect On Wrinkle Development In Composite Forming Processes, David Sundquist

McKelvey School of Engineering Theses & Dissertations

Composite materials are becoming prevalent in aerospace industries as the uniqueness of the composite structure allows the composite to be tailored specifically for individual applications. Many fabrication techniques produce defects in composite parts such as wrinkles, fiber waviness, fiber misalignment, and porosity. The driving mechanisms behind these defects occurring during forming processes are not fully understood and, thus, characterization formation of these defects in a uncured state is beneficial to optimize composite processing. This work primarily investigated the influence of how uncured pre-impregnated carbon ply properties affect the wrinkling behavior of a composite laminates. Several factors affecting composite ply forming …

Functional Bio-Nano Hybrids Through A Precise Control Of Interfacial Interactions At The Nanoscale, Sirimuvva Tadepalli

McKelvey School of Engineering Theses & Dissertations

During the course of evolution, proteins have evolved to perform exquisite functions including structural support, signal transduction, actuation, sensing, catalysis, trafficking, gating, light-harvesting, charge transfer, molecular recognition, self-assembly, self-organization, or combinations of two or more of these functions. A precise control and manipulation of the structure and function of proteins is conceivable with the advent of nanotechnology, which has facilitated the integration of nanomaterials with functional biomolecules to realize bio-nano hybrids with synergistically enhanced functionalities.

At the genesis of bionanotechnology, a paucity in the fundamental understanding of the bio-nano interfaces is a grave impediment to the progress of the field. …

Cloth Folding Machine, Yiwei Liu, Dung Tran, Kexin Wang

Mechanical Engineering Design Project Class

The project was designed to meet the needs of folding clothes for college students, housewives or anyone who has trouble folding clothes. Lots of college students are annoyed by spending time folding clothes based on our customer interviews. In addition, most of clothes folding machine in market are either for industry use or too expensive. We are trying to build a portable automatic clothes folding machine at a cheap cost to serve most people. It not only combined the metrics from existing products but also have two folding patterns, which is more convenient and efficient.

Tissue Stretcher Research Device, Taylor Vitunic, Zhang Liu, Edward Tiemann

Mechanical Engineering Design Project Class

This senior design project resulted in a prototype of a tissue stretcher for a particular need in a lab at WashU. The prototype uses a stepper motor, micrometer, force transducer, linear slide, and manufactured couplings to precisely record the stress strain response of a bio-tissue through different protocols. This is a holistic report encompassing all parts of the design process from the initial goal to design creation and evaluation to assembly.

3d Printed Below-The-Knee Prosthetic Leg, Sam Jamison, Katelin Fournier, Isabelle Agostini

Mechanical Engineering Design Project Class

There are over 2 million amputees in the United States and more than 90 percent of amputations done today are for lower limbs. While there are highly advanced options on the market today, there are still several areas of improvement. For instance, there are not many options that are completely waterproof, and the more advanced ones are extremely expensive and heavy. Our project idea is to create a below-the-knee prosthetic leg that is water resistant, affordable, and promotes comfort. The leg will be designed to disperse the loads and stresses over the whole structure using 3D printing and supporting metal …

Group G: Drink Mixer Ii, Yvette Anguiano, Tristram Wilson, Jacob Rother

Mechanical Engineering Design Project Class

We, group G, want to address the needs of the restaurant industry by facilitating it with the products, alcoholic beverages, that often brings in the most income in a night for the business and for its bartenders. Mixing drinks takes specialized attention, energy, and time and can be a stressful task for bartenders to perform when a restaurant is packed with customers. Waits become longer and drink orders back up until the restaurant empties again. Our group strives to create a product that will ensure each customer is served with fast and efficient service, while still providing the special attention …

Threading Mechanism For A Home Warp Knitting Machine, Daniel Martin, Samuel Fortmann, Andrew O'Sullivan

Mechanical Engineering Design Project Class

A home warp knitting machine has a huge disadvantage compared to weft knitting in that it is very difficult to start up. Though it can provide better quality garments, each needle requires a thread to be individually loaded. If this problem could be mechanically solved, a home warp knitting machine would be feasible. Our machine should be able to spool out the appropriate amount of thread onto smaller spools which can then be loaded into the various needles. However it is able to do this, it should not take up more space than reasonably allocated by thread volume itself, and …

Asme Soccer Robot- Group V, Gonzalo Berluzconi, Lyndon Zhao, Chan-Hwi Cho

Mechanical Engineering Design Project Class

The ASME design challenge, featuring a soccer playing robot theme, was attempted and successfully completed. A robot was built that could move in all directions for translational motion, while a Foosball inspired kicking function completed the design.

Bi-Axial Tissue Stretching Machine: Mems 411 Senior Design Project, Wending Zhu, Martin Valkov, Jordan Patterson

Mechanical Engineering Design Project Class

This report contains information on the development of a device to strain polyvinyl alcohol hydrogel samples. The device was made with the purpose of gathering data on the creation of anisotropy in brain tissue-like materials, such as PVA, by repeatedly subjecting materials to strain in low temperatures.

3d Printed Prosthetic Hand, Mark Sullivan, Bryan Oh, Ian Taylor

Mechanical Engineering Design Project Class

3D printed prosthetic hands are a common medical device for pediatric partial hand patients due to their manufacturability and cost-effectiveness. Current designs employ a single fist grip, but prosthetists agree that the most useful grip is the three-finger chuck. We aim to modify an existing 3D printed prosthetic hand to enable the user to switch between a single fist grip and three-finger chuck as well as lock the grip that is being used.

Blind-Automation Device, Melinda Lai, Dalton Nonweiler, Haley Nichols

Mechanical Engineering Design Project Class

This project is intended to be a safe, easy, and inexpensive addition to existing window covers to maintain consistent indoor lighting by automatically adjusting blinds in response to ambient light levels. Our target customers are homeowners/renters and business owners concerned about employee productivity and wellness. This product will allow homeowners, business owners, and building tenants to increase occupant productivity. Bright sunlight can cause glare, making employees uncomfortable and reducing their productivity, along with their health. The product will automatically adjust window blinds to maintain a comfortable interior lighting level, promoting productivity and the bottom line. The product can also reduce …