Engineering Commons^™

Metagenomic Survey Of Marine 16s Bacterial Communities Off Palmer Station In Antarctica, Daniel Salter

Master's Projects

This project surveys the metagenomic bacterial community composition in marine surface waters off Palmer Station, Western Antarctic Peninsula and correlates findings with temperature and salinity data. Marine bacterial communities play a vital role in nutrient cycling, but data on surface waters in this region are limited. Analyzing fifteen samples of 16S sequencing data from three austral summers, consistent dominance was observed by the classes Alphaproteobacteria, Gammaproteobacteria, and Flavobacteria. Correlation analysis confirmed significant relationships between taxa and environmental conditions. The observed trends suggest varying abilities of phyla to resist and adapt to changing environmental conditions. Notably, Alphaproteobacteria demonstrated adaptability to favorable …

Malware Classification Using Opcode N-Grams And Word Embeddings, Siddhita Joshi

Master's Projects

Malware is a serious risk to any software application whether it is standalone or over the network. In order to protect computer systems, it is essential to detect and classify malware effectively. Modern malware classification research focuses on Machine Learning and Deep Learning techniques to identify advanced malicious software. This project explores malware classification by combining two robust methods: n-grams and word embedding. By extracting opcode n-grams, we make use of sequential nature of malware execution to identify any local patterns within the malware executable.

We use word embedding methods such as Word2Vec, Doc2Vec, and FastText to produce dense vector …

Evaluation Of The Effect Of Walnut Extract On Sp1-Related Pathways, Jihan Yehia

Master's Projects

Walnut extract (WE) has shown promising anti-cancer effects, such as inducing apoptosis and moderating cell cycle progression. A previous study by Dr. Brandon White’s Lab at San Jose State University hypothesizes that WE can downregulate the expression of the pro-tumoral specificity protein 1 (Sp1) in triple negative breast cancer (TNBC). This project builds an RNA-seq pipeline that runs differential gene expression (DGE) analysis to study the effect of WE on TNBC, thereby offering a wider perspective on genes that may be affected by this treatment. The data used in this project originated from Illumina and Nanopore sequencing methods, and DGE …

Efficient Video Qoe Prediction In Intelligent O-Rans, Aditya Kulkarni

Master's Projects

Open Radio Access Network (O-RAN) is a platform developed by a collaboration between wireless operators, infrastructure vendors, and service providers for deploying mobile fronthaul and midhaul networks, built entirely on cloud-native principles. The vision of O-RAN lies in the virtualization of traditional wireless infrastructure components, like Central Units (CU), Radio Units (RU), and Distributed Units (DU). O-RAN decouples the above-mentioned wireless infrastructure components into opensource elements, operating consistently with other elements of different vendors in the network. Quality of Experience (QoE) deals with a user’s subjective measure of satisfaction. RAN Intelligent Controller (RIC) in O-RAN provides flexibility to intelligently program …

Unlearning Hidden Bias Between Refugees : An Initial Empirical Investigation, Akshay Sunil Gurnaney

Master's Projects

The challenges that refugees in various regions encounter are common knowledge. One such challenge is a bias among refugees on ethnocentric grounds. In particular, there are various articles that have pointed out the struggles faced by Syrian refugees in countries like Europe as a result of implicit bias. In fact, the media coverage of Syrian crises and the government responses to the same shed negative light on the refugees themselves. On the contrary, the media coverage of Ukrainian crises is very different with lesser restrictions from the governments.

This research attempts to identify the extent of implicit bias between Ukrainian …

Poriferal Vision: Using Mobilenet To Classify Sponge Spicules Through Transfer Learning, Brian Tran

Master's Projects

Global warming is an ongoing issue where the Earth is rapidly warming up. It negatively affects the growth of coral through ocean warming and ocean acidification. Many coral communities, home to a large variety of marine life, are expected to be severely impacted by these effects. Past evidence suggests that sponges will take over as the primary reef builders since many species of sponges have skeletons made of silica or glass which is not affected by ocean acidification. More research is needed to determine which kinds of sponge will most likely be able to thrive in today’s climate.

This can …

Evalsql - Automated Assessment Of Database Queries, Damanpreet Kaur

Master's Projects

In computer science programs, database is a fundamental subject taught through several undergraduate courses. These courses develop theoretical and practical concepts of databases. Building queries is a key aspect of this learning process, and students are assessed through assignments and quizzes. However, grading these assignments can be time-consuming for professors, and students usually receive feedback only after the deadlines have passed. As a result, students may miss the opportunity to improve their work and achieve better grades. To address this issue, it would be beneficial to provide students with immediate feedback on their submissions. EvalSQL is an automated system that …

Solving The Capacitated Vehicle Routing Problem Using A New Genetic Algorithm, Cajetan Rodrigues

Master's Projects

The Capacitated Vehicle Routing Problem (CVRP) [1, 2, 3] is an extension to the Vehicle Routing Problem (VRP), a well-known NP-hard optimization problem. In our CVRP, we are given a depot, the number of vehicles and their capacity, as well as a set of customers and their demands, both the depot and the set of customers lie in the Euclidean space. The goal is to find for each vehicle an optimal route (tour) starting and finishing at the depot, such that all customers are served exactly once.

In this study, we investigate the effectiveness of using a Genetic Algorithm (GA) …

Advances In Robustness Of Image-Based Malware Detection, Rishika Pamanji

Master's Projects

In recent years, deep learning has emerged as a powerful tool for image classification tasks. However, the performance of individual deep learning models can be limited by their architecture and training data. In this project, various Convolutional Neural Network (CNN) architectures are proposed to train the malware data for feature extraction for various color coordinates such as L, CMYK, RGB, RGBA, and YCbCr. Different optimization techniques like Stochastic Gradient Descent, Root Mean Square Propagation, Ada Delta, Adam, and Adaptive Gradient are used to minimize errors in the trained data, leading to enhanced accuracy. The proposed ensemble deep learning model for …

Visual Scene Classification Using Ensemble Of Machine Learning Classifiers, Rahul Ranganath

Master's Projects

Visual scenes represent the comprehensive visual information observed in a particular environment. Whether natural landscapes, urban settings, or designed interiors, visual scenes encompass the arrangement of elements that individuals perceive through their visual senses. Visual search is perhaps one of the most typical jobs that we carry out several times a day. This is one of the main paradigms for researching visual attention. Many visual task models have been put forward in an effort to better understand visual attention. Fixations and the rapid movement of the eye - saccades, define visual exploration and visual search. When we subject viewers to …

Identification Of Copy Number Variations (Cnvs) Of Epigenetic Factors Related To The Progression Of Pancreatic Ductal Adenocarcinoma (Pdac), Pavithra Raju

Master's Projects

Pancreatic ductal adenocarcinoma (PDAC) is a formidable challenge in oncology due to its aggressive form and late-stage detection. PDAC is known to be influenced by various epigenetic factors like DNA methylation and histone modifications. This study focuses on copy number variations (CNVs) within epigenetic factors which for their role in early diagnosis. Thus, paving the way for identification of potential biomarkers. The epigenetic pipeline was extended based on CNVs and the CNV modified sequences extracted were compared with the wild type sequences of epigenetic PDAC genes. The epigenetic gene KCNJ11 with copy number gain of CNV id 46771406 was used …

Analyzing The Benthic Cover Of Crustose Coralline Algae Using Mask-R Cnn, Rachana Ravindra

Master's Projects

Coral reefs, supporting 25% of marine biodiversity, confront challenges from local and global impacts like overfishing, runoff, acidification, and warming. Crustose Coralline Algae (CCA), pivotal for reef structure and coral settlement, are underrepresented in research. Current methods like Coral Point Count with Excel Extensions (CPCe) have limitations, relying on image quality and being time-consuming. This paper proposes computer vision and Mask R-CNN, a supervised machine learning model, for CCA analysis in reef images, considering color, texture, and shape. Results indicate promise in clustering and classifying organisms. The innovative technology reduces manual labor, enhancing image analysis, simplifying the understanding of CCA’s …

Ensemble Transformer Architecture For Efficient And Real Time Sign Language Translation, Sumeet Ghegade

Master's Projects

Sign language is a form of visual language that uses face expression and hand gestures to communicate thoughts and concepts. The term refers to multiple visual languages that share some common visual cues but differ in their grammar and syntax. Sign language translation (SLT) is a crucial step in closing the communication gap between hearing and hearingimpaired people. The study of SLT using machine learning has gotten a lot of interest during the last three years but despite progress, SLT research is still in its early phases. Most of the previous approaches first convert the signs to glosses and then …

Gesture Recognition Of Sign Language Alphabet Using Machine Learning Techniques, Gursimran Singh

Master's Projects

With the rising incidence of hearing loss, effective sign language recognition has become crucial for enhancing communication for individuals with hearing impairments. Traditional sensor-based recognition systems have been challenged by the complexities of realworld settings, prompting a shift toward more adaptable vision-based recognition systems. Distinct from previous studies, this work pioneers the use of ensemble methods with advanced filtering techniques on the Sign Language MNIST dataset, offering a novel perspective on sign language recognition. This research delves into the intersection of machine learning and image processing to develop a robust framework for sign language recognition. A range of filters, including …

Comparative Adjudication Of Noisy And Subjective Data Annotation Disagreements For Deep Learning, Scott David Williams

Browse all Theses and Dissertations

Obtaining accurate inferences from deep neural networks is difficult when models are trained on instances with conflicting labels. Algorithmic recognition of online hate speech illustrates this. No human annotator is perfectly reliable, so multiple annotators evaluate and label online posts in a corpus. Labeling scheme limitations, differences in annotators' beliefs, and limits to annotators' honesty and carefulness cause some labels to disagree. Consequently, decisive and accurate inferences become less likely. Some practical applications such as social research can tolerate some indecisiveness. However, an online platform using an indecisive classifier for automated content moderation could create more problems than it solves. …

Enhancing Graph Convolutional Network With Label Propagation And Residual For Malware Detection, Aravinda Sai Gundubogula

Browse all Theses and Dissertations

Malware detection is a critical task in ensuring the security of computer systems. Due to a surge in malware and the malware program sophistication, machine learning methods have been developed to perform such a task with great success. To further learn structural semantics, Graph Neural Networks abbreviated as GNNs have emerged as a recent practice for malware detection by modeling the relationships between various components of a program as a graph, which deliver promising detection performance improvement. However, this line of research attends to individual programs while overlooking program interactions; also, these GNNs tend to perform feature aggregation from neighbors …

Effective Systems For Insider Threat Detection, Muhanned Qasim Jabbar Alslaiman

Browse all Theses and Dissertations

Insider threats to information security have become a burden for organizations. Understanding insider activities leads to an effective improvement in identifying insider attacks and limits their threats. This dissertation presents three systems to detect insider threats effectively. The aim is to reduce the false negative rate (FNR), provide better dataset use, and reduce dimensionality and zero padding effects. The systems developed utilize deep learning techniques and are evaluated using the CERT 4.2 dataset. The dataset is analyzed and reformed so that each row represents a variable length sample of user activities. Two data representations are implemented to model extracted features …

Fuzzing Php Interpreters By Automatically Generating Samples, Jacob S. Baumgarte

Browse all Theses and Dissertations

Modern web development has grown increasingly reliant on scripting languages such as PHP. The complexities of an interpreted language means it is very difficult to account for every use case as unusual interactions can cause unintended side effects. Automatically generating test input to detect bugs or fuzzing, has proven to be an effective technique for JavaScript engines. By extending this concept to PHP, existing vulnerabilities that have since gone undetected can be brought to light. While PHP fuzzers exist, they are limited to testing a small quantity of test seeds per second. In this thesis, we propose a solution for …

Human Tracking Function For Robotic Dog, Andrew Sharkey

Williams Honors College, Honors Research Projects

With the increase the increase in automation and humans and robots working side by side, there is a need for a more organic way of controlling robots. The goal of this project is to create a control system for Boston dynamics robotic dog Spot that implements human tracking image software to follow humans using computer vision as well as using hand tracking image software to allow for control input through hand gestures.

Improving Developers' Understanding Of Regex Denial Of Service Tools Through Anti-Patterns And Fix Strategies, Sk Adnan Hassan, Zainab Aamir, Dongyoon Lee, James C. Davis, Francisco Servant

Department of Electrical and Computer Engineering Faculty Publications

Regular expressions are used for diverse purposes, including input validation and firewalls. Unfortunately, they can also lead to a security vulnerability called ReDoS (Regular Expression Denial of Service), caused by a super-linear worst-case execution time during regex matching. Due to the severity and prevalence of ReDoS, past work proposed automatic tools to detect and fix regexes. Although these tools were evaluated in automatic experiments, their usability has not yet been studied; usability has not been a focus of prior work. Our insight is that the usability of existing tools to detect and fix regexes will improve if we complement them …

An Empirical Study Of Pre-Trained Model Reuse In The Hugging Face Deep Learning Model Registry, Wenxin Jiang, Nicholas Synovic, Matt Hyatt, Taylor R. Schorlemmer, Rohan Sethi, Yung-Hsiang Lu, George K. Thiruvathukal, James C. Davis

Department of Electrical and Computer Engineering Faculty Publications

Deep Neural Networks (DNNs) are being adopted as components in software systems. Creating and specializing DNNs from scratch has grown increasingly difficult as state-of-the-art architectures grow more complex. Following the path of traditional software engineering, machine learning engineers have begun to reuse large-scale pre-trained models (PTMs) and fine-tune these models for downstream tasks. Prior works have studied reuse practices for traditional software packages to guide software engineers towards better package maintenance and dependency management. We lack a similar foundation of knowledge to guide behaviors in pre-trained model ecosystems.

In this work, we present the first empirical investigation of PTM reuse. …

Initiating Change In Care: Socially Assistive Robots, Sooraj Sushama

Theses and Dissertations

Socially assistive robots (SAR) are autonomous machines equipped with sensors and software that allow them to interact socially with humans. SAR robots are commonly used in healthcare settings to provide patients with non-clinical support, such as conversation and emotional companionship. SARs can also deliver reminders, monitor vital signs, and provide educational information about health conditions or medications. Researchers have studied SAR applications in detail. Additionally, there has been prior research on SAR where users' sociodemographic factors and technology acceptance were studied. But even though the backbone of SAR is an advanced technology, no known research has been done on users' …

Media Streaming In A High-Rate Delay Tolerant Network, Kyle Vernyi

Williams Honors College, Honors Research Projects

Audio and video streaming across delay tolerant networks are relatively new phenomena. During the Apollo 11 mission, video and audio were streamed directly back to Earth using fully analog radios. This streaming capability atrophied over time. The gradual conversion to digital electronics contributed greatly to this. Additionally, 21st century space systems face the new requirement of interconnectedness. Delay Tolerant Networking (DTN) attempts to solve this requirement by uniting traditional point to point links into a robust and dynamic network. However, DTN implementations present bottlenecks due to low performance. High-Rate Delay Tolerant Networking (HDTN) is a performance-optimized DTN implementation. This work …

Smart Power Outlet, Kyrolos Melek, Joseph M. Garro, Ethan G. Frese, Madison Britton

Williams Honors College, Honors Research Projects

With an ever-increasing demand on the electrical grid and an increase in electrical consumer goods per household, effective power management and monitoring for home users is a must. The objective of this project is to create a consumer outlet and companion phone application. The power outlet will measure power draw on each socket and report these measurements via an embedded system, wirelessly, to the application. The application will then allow for setting custom power draws at which an individual socket will switch off if exceeded and will display how much a given outlet or individual socket is costing per unit …

Small Voip-Supported Network, Drina Hobson

Williams Honors College, Honors Research Projects

Create a small VoIP network using SIP using physical Cisco equipment. Implement advanced VoIP features such as multicast paging, voice message system & message waiting indicator, and music-on-hold.

Multifaceted Cybersecurity Analysis: Reconnaissance, Exploitation And Mitigation In A Controlled Network Environment, Austin Coontz

Williams Honors College, Honors Research Projects

This report details a network penetration test in a simulated environment using GNS3, focusing on the configuration of routers, switches, and hosts. The project successfully identified and exploited network vulnerabilities, including FTP access, misconfigured sudo permissions, and SMB protocol weaknesses. The penetration testing process utilized tools like fping and nmap for reconnaissance and vulnerability scanning, revealing the importance of device configurations in network security. The project concluded with mitigation strategies, emphasizing the need for secure access, robust password policies, and security controls. The experience underscored the significance of continuous learning and adaptation in the ever-evolving field of cybersecurity. The project …

Leveraging Ansible To Locate Network Devices, Elijah Hadden

Williams Honors College, Honors Research Projects

This report demonstrates the collection of Layer 2 and Layer 3 network device information using Ansible and explains the limitations identified performing such a procedure. Maintaining dynamic documentation of network information using automation would benefit network security with improvements to attack surface visibility and cyberattack incident response time. After the procedure was conducted, it was determined that Ansible alone is incapable of producing the intended information base due to the way it handles numerical variables. This report identifies limitations in Ansible’s ability to manipulate large quantities of network information and necessitates further discussion regarding what Ansible can and should be …

Defense Of A Small Network, Isabella Adkins

Williams Honors College, Honors Research Projects

A sample network will be virtually created consisting of three routers, one switch, and three hosts. The network will be secured using various methods such as enabling passwords and encryption. After the network has been properly secured, various attacks will be attempted with the goal of breaking into the network. These attacks include reconnaissance (gathering information), penetrating the network using the tool Metasploit, and attempting to get a credential phishing email to end users. If successful in the attacks, the network will be revisited and analyzed for any weaknesses or oversights.

Small Business Office Network, Michael Gerome

Williams Honors College, Honors Research Projects

This project will emulate a small office network environment. The project will demonstrate the process of building and configuring the network to meet the requirements laid out in the project plan. This network includes four subnets with Windows 10 end devices and a Kali Linux device, it also includes five Cisco layer 2 switches and three Cisco routers. There are also three subnets connecting the routers to each other to enable routing between the subnets. After the network environment is set up, various penetration tests are performed from the Kali Linux device to gather information. The Nmap reconnaissance tool is …

Space Force Design Project, Emily Greene, Ashton Orosa, Julia Patek, Nathan Doty

Williams Honors College, Honors Research Projects

The objective of our research project is to develop a lab testbed composed of a curved surface to represent a spacecraft hull, a mobile robot equipped with repair tools, and a robotic arm equipped with a laser 3D scanner. This project is part of a larger grant to the University of Akron from Space Force and Air Research Labs. The lab testbed developed in this project will be used to assist in creating and testing a software and algorithm to inspect and repair spacecraft while in orbit. The project will involve researching spacecraft hulls to create an accurate simulation bed, …