Engineering Commons^™

Community-Of-Interest (Coi) Model-Based Languages Enabling Composable Net-Centric Services, Andreas Tolk, Saikou Y. Diallo

Computational Modeling & Simulation Engineering Faculty Publications

Net-centric services shall be designed to collaborate with other services used within the supported Community of Interest (COI). This requires that such services not only be integratable on the technical level and interoperable on the implementation level, but also that they are composable in the sense that they are semantically and pragmatically consistent and able to exchange information in a consistent and unambiguous way.

In order to support Command-and-Control with Composable Net-centric Services, the human-machine interoperation must be supported as well as the machine-machine interoperation. This paper shows that techniques of computer linguistic can support the human-machine interface by structuring …

A Synthesised Knowledge Mapping Framework To Embed A Km Strategy Using Topic Maps And Wikis: The Tao Of Wiki, Colman A.J. Mcmahon

Dissertations

Just getting started with knowledge management can be difficult enough for many organisations, however the real challenge is actually how to embed the new practices. The expression "Success is a journey, not a destination" is particularly apt for KM. This research presents findings from stakeholder analyses carried out in an Irish government agency. The agency has been on its KM journey for nearly four years and has attempted to implement a comprehensive and full-scale strategy. The findings indicate that KM practices have not yet become fully embedded in the organisation. This research uncovers some of the reasons why not. In …

Assessing The Impact Of Organisational Culture When Introducing Web.2.0 Technologies Into A Non-Profit Organisation For Knowledge Managment, Heather Madden

Dissertations

Some of the key challenges that any organisation faces today are those of knowledge sharing and collaboration. This research investigates knowledge sharing in existing communities of practice in a non-profit organisation and the challenges that are faced by attempting to facilitate online interactions for these communities. Organisation culture can either incentivise or impede this process and this research will describe how people and culture are two of the most important factors when considering a knowledge management initiative. Given that the impact of culture is such a key issue, a number of organisations are interviewed and evaluated to compare and contrast …

The Videoconferencing Classroom: What Do Students Think?, Dr. Anthony Mark Doggett

Architectural and Manufacturing Sciences Faculty Publications

The advantages of video conferencing in educational institutions are well documented. Scholarly literature has indicated that videoconferencing technology reduces time and costs between remote locations, fill gaps in teaching services, increases training productivity, enables meetings that would not be possible due to prohibitive travel costs, and improves access to learning (Martin, 2005; Rose, Furner, Hall, Montgomery, Katsavras, & Clarke, 2000; Townes-Young & Ewing, 2005; West, 1999). However, there are few studies that analyze the effectiveness of videoconferencing from the student’s perspective. Videoconferencing technology is often touted as a method to connect with previously inaccessible student populations, but does it adequately …

Communication Of Medical Information Using Agents, John Mcgrory, Jane Grimson, Frank Clarke, Peter Gaffney

Conference Papers

Agents are self-contained software entities which act faithfully and autonomously on behalf of a body of knowledge. They can operate in a standalone capacity, or as part of a social group collaborating and

coordinating activities with other software agents. To access their knowledge, agents are interfaced with

using message passing communication. The principle behind medical communications is to provide a means

for exchanging information and knowledge from one computerised location to another, whilst preserving its

true meaning and understanding between the listener and sender. Agent communication is similar to medical

communications, but must provide an additional framework element to allow …

Metadata Visualisation Techniques For Emotional Speech Corpora, Charlie Cullen, Brian Vaughan, Spyros Kousidis

Conference papers

Our research in emotional speech analysis has led to the construction of dedicated high quality, online corpora of natural emotional speech assets. Once obtained, the annotation and analysis of these assets was necessary in order to develop a database of both analysis data and metadata relating to each speech act. With annotation complete, the means by which this data may be presented to the user online for analysis, retrieval and organization is the current focus of our investigations. Building on an initial web interface developed in Ruby on Rails, we are now working towards a visually driven GUI built on …

Rfid: An Ideal Technology For Ubiquitous Computing?, Ciaran O'Driscoll, Daniel Maccormac, Mark Deegan, Fredrick Mtenzi, Brendan O'Shea

Conference papers

This paper presents a review of RFID based approaches used for the development of smart spaces and smart objects. We explore approaches that enable RFID technology to make the transition from the recognized applications such as retail to ubiquitous computing, in which computers and technology fade into the background of day to day life. In this paper we present the case for the use of RFID technology as a key technology of ubiquitous computing due to its ability to embed itself in everday objects and spaces. Frameworks to support the operation of RFID-based smart objects and spaces are discussed and …

Scpred: Accurate Prediction Of Protein Structural Class For Sequences Of Twilight-Zone Similarity With Predicting Sequences, Lukasz Kurgan, Kryzysztof Cios, Ke Chen

Computer Science Publications

Background

Protein structure prediction methods provide accurate results when a homologous protein is predicted, while poorer predictions are obtained in the absence of homologous templates. However, some protein chains that share twilight-zone pairwise identity can form similar folds and thus determining structural similarity without the sequence similarity would be desirable for the structure prediction. The folding type of a protein or its domain is defined as the structural class. Current structural class prediction methods that predict the four structural classes defined in SCOP provide up to 63% accuracy for the datasets in which sequence identity of any pair of sequences …

Improved Machine Learning Method For Analysis Of Gas Phase Chemistry Of Peptides, Allison Gehrke, Shaojun Sun, Lukasz Kurgan, Natalie Ahn, Katheryn Resing, Karen Kafadar, Kryzysztof Cios

Computer Science Publications

Background

Accurate peptide identification is important to high-throughput proteomics analyses that use mass spectrometry. Search programs compare fragmentation spectra (MS/MS) of peptides from complex digests with theoretically derived spectra from a database of protein sequences. Improved discrimination is achieved with theoretical spectra that are based on simulating gas phase chemistry of the peptides, but the limited understanding of those processes affects the accuracy of predictions from theoretical spectra.

Results

We employed a robust data mining strategy using new feature annotation functions of MAE software, which revealed under-prediction of the frequency of occurrence in fragmentation of the second peptide bond. We …

Technology-Aided Participative Methods In Environmental Assessment: An International Perspective, Ainhoa Gonzalez, Alan Gilmer, Ronan Foley, John Sweeney, John Fry

Articles

Provisions for citizen involvement in the assessment of potential environmental effects of certain plans, programmes and projects are present in current legislation. An international survey revealed that public participation is common practice in European and some other countries worldwide. However, a number of issues are observed to affect public involvement in EIA/SEA processes and expert opinion differs when evaluating the effectiveness of existing participative methods. Results suggest that technology-aided methods can improve traditional participation processes. In particular, GIS has the potential to increase community knowledge and enhance involvement by communicating information more effectively. Variable accessibility to technology and data quality …

The Design And Testing Of Hand Held Devices To Assist Persons With Disabilities To Navigate Bus Services, Daniel Fitch

Undergraduate Review

Many transit systems around the U.S. are using global positioning systems to track their buses. Some of these systems provide bus locations in real-time on web maps. With internet integration becoming common in portable electronics, this research project analyzed the opportunity to utilize mass market devices to assist the general public and persons with disabilities to access and navigate fixed route bus services. This study has taken advantage of the state of the art automatic vehicle location systems aboard the Cape Cod Regional Transit Authority and MetroWest (Boston) Regional Transit Authority bus services, Microsoft Virtual Earth mapping services and Microsoft …

A Scalable Clustered Camera System For Multiple Object Tracking, Senem Velipasalar, Jason Schlessman, Cheng-Yao Chen, Wayne H. Wolf, Jaswinder P. Singh

Department of Electrical and Computer Engineering: Faculty Publications

Reliable and efficient tracking of objects by multiple cameras is an important and challenging problem, which finds wide-ranging application areas. Most existing systems assume that data from multiple cameras is processed on a single processing unit or by a centralized server. However, these approaches are neither scalable nor fault tolerant. We propose multicamera algorithms that operate on peer-to-peer computing systems. Peer-to-peer vision systems require codesign of image processing and distributed computing algorithms as well as sophisticated communication protocols, which should be carefully designed and verified to avoid deadlocks and other problems. This paper introduces the scalable clustered camera system, which …

Genomic Counter-Stress Changes Induced By The Relaxation Response, Jeffery A. Dusek, Hasan H. Otu, Ann L. Wohlhueter, Manoj Bhasin, Luiz F. Zerbini, Marie G. Joseph, Herbert Benson, Towia A. Libermann

Department of Electrical and Computer Engineering: Faculty Publications

Background: Mind-body practices that elicit the relaxation response (RR) have been used worldwide for millennia to prevent and treat disease. The RR is characterized by decreased oxygen consumption, increased exhaled nitric oxide, and reduced psychological distress. It is believed to be the counterpart of the stress response that exhibits a distinct pattern of physiology and transcriptional profile. We hypothesized that RR elicitation results in characteristic gene expression changes that can be used to measure physiological responses elicited by the RR in an unbiased fashion.

Methods/Principal Findings: We assessed whole blood transcriptional profiles in 19 healthy, long-term practitioners of daily RR …

Proteomic Identification Of Interleukin-2 Therapy Response In Metastatic Renal Cell Cancer, Jon Jones, Hasan H. Otu, Franck Grall, Dimitrios Spentzos, Handan Can, Manuel Aivado, Arie S. Belldegrun, Allan J. Pantuck, Towia A. Libermann

Department of Electrical and Computer Engineering: Faculty Publications

Introduction—To detect a predictive protein profile that distinguishes between IL-2 therapy responders and non-responders among metastatic RCC patients we used surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI TOF-MS).

Materials and Methods—Protein extracts of 56 metastatic clear cell RCC patients obtained from radical nephrectomy specimens and prior to IL-2 therapy were applied to protein chip arrays of different chromatographic properties and analyzed using SELDI TOF-MS. A class prediction algorithm was applied to identify a subset of protein peaks whose expression values were associated with IL-2 response status. Multivariate analysis was performed to assess the association between the proteomic profile …

Differential Expression Of Gadd45Β In Normal And Osteoarthritic Cartilage: Potential Role In Homeostasis Of Articular Chondrocytes, Kosei Ijiri, Luiz F. Zerbini, Haibing Peng, Hasan H. Otu, Kaneyuki Tsuchimochi, Miguel Otero, Cecilia Dragomir, Nicole Walsh, Benjamin E. Bierbaum, David Mattingly, Geoff Van Flandern, Setsuro Komiya, Thomas Aigner, Towia A. Libermann, Mary B. Goldring

Department of Electrical and Computer Engineering: Faculty Publications

Objective—Our previous study suggested that growth arrest and DNA damage–inducible protein 45β (GADD45β) prolonged the survival of hypertrophic chondrocytes in the developing mouse embryo. This study was undertaken, therefore, to investigate whether GADD45β plays a role in adult articular cartilage.

Methods—Gene expression profiles of cartilage from patients with late-stage osteoarthritis (OA) were compared with those from patients with early OA and normal controls in 2 separate microarray analyses. Histologic features of cartilage were graded using the Mankin scale, and GADD45β was localized by immunohistochemistry. Human chondrocytes were transduced with small interfering RNA (siRNA)–GADD45 …

The Theory Of Quaternion Orthogonal Designs, Jennifer Seberry, Ken Finlayson, Sarah Spence Adams, Tadeusz Wysocki, Tianbing Xia, Beata Joanna Wysocki

Department of Electrical and Computer Engineering: Faculty Publications (to 2015)

Over the past several years, there has been a renewed interest in complex orthogonal designs for their application in space–time block coding. Motivated by the success of this application, this paper generalizes the definition of complex orthogonal designs by introducing orthogonal designs over the quaternion domain. This paper builds a theory of these novel quaternion orthogonal designs, offers examples, and provides several construction techniques. These theoretical results, along with the results of preliminary simulations, lay the foundation for developing applications of these designs as orthogonal space–time-polarization block codes.

Truncated Hyperbolic Mapping For Non-Binary Turbo Coding In Uwb, K. Popovski, Tadeusz Wysocki, B. J. Wysocki

Department of Electrical and Computer Engineering: Faculty Publications (to 2015)

The combination of user multiplexing and data encoding within Ultra Wideband systems has been proposed to improve bit error performance. Relative to conventional binary coding, this technique has shown to reduce error rates in scarcely populated systems. Where non-binary turbo coding modulates data to form an integer sequence, a random mapping is generally applied to develop a time hopping sequence. This paper explores the possibility of mapping through the application of truncated hyperbolic congruence codes. Comparative results against a random mapping indicate an improvement in system performance for higher turbo iteration levels in the receiver. Transceiver architecture is based upon …

Combined User Multiplexing And Data Modulation Through Non-Binary Turbo Codes For Uwb, K. Popovski, Tadeusz Wysocki, B. J. Wysocki

Department of Electrical and Computer Engineering: Faculty Publications (to 2015)

With significant research being conducted in Ultra Wideband communications to increase error performance, this paper proposes a combination of user multiplexing and data encoding to achieve a BER improvement. Through the use of non-binary turbo coding, data is modulated to form a time hopping code which is applied to a time-reversed UWB system. Comparative results with conventional binary coding are given, showing the possibility for BER improvements in systems with a low number of users. Slight performance degradations for a large number of users exist. The effects of a user applying turbo coding on other users not applying forward error …

Artificial Immune System Based Image Pattern Recognition In Energy Efficient Wireless Multimedia Sensor Networks, Honggang Wang, Dongming Peng, Wei Wang, Hamid Sharif, J. Wegiel, D. Nguyen, R. Bowne, C. Backhaus

Department of Electrical and Computer Engineering: Faculty Publications (to 2015)

In Wireless Multimedia Sensor Networks (WMSNs), low cost Complementary Metal Oxide Semiconductor (CMOS) camera sensors may only produce low resolution images due to hardware limitations. However, super-resolution images may be constructed from these low resolution images in a multiple sensor network, improving object pattern recognition success rates. There is a critical image recognition challenge in these reconstructed superresolution images for accuracy, complexity and limited energy resource in wireless sensor networks. Artificial Immune Systems (AIS), in particular those possessing algorithmic efficiency for image pattern differentiation, categorization and recognition, have potential advantages in low-cost automated monitoring and object detection applications. In this …

Throughput Vs. Distance Tradeoffs And Deployment Considerations For A Multi-Hop Ieee 802.16e Railroad Test Bed, Wei Wang, Hamid Sharif, Ting Zhou, Puttipong Mahasukhon

Department of Electrical and Computer Engineering: Faculty Publications (to 2015)

Throughput vs. distance analysis and coverage requirements are critical issues in planning wireless network deployments. With the recent availability of IEEE 802.16e and its promise of larger coverage areas for high-speed data communication, evaluating it in a real-world environment is very important to us in our ongoing study of standards based wireless technologies for the Federal Railroad Administration (FRA). In this paper, we present results obtained with our IEEE 802.16e module for NS-2, particularly throughput vs. distance performance, and its consideration for designing a real-world multi-hop IEEE 802.16e testbed. Firstly, a quantitative analysis of throughput vs. distance performance is conducted …

Development And Performance Evaluation Of A Flexible, Low Cost Manet, M. Abolhasan, B. Hagelstein, J.C-P. Wang, D.R. Franklin, F Safaei, Tadeusz Wysocki

Department of Electrical and Computer Engineering: Faculty Publications (to 2015)

Performance evaluations of multi-hop ad hoc network routing protocols have been primarily conducted through analytic and simulation-based studies, which frequently fail to accurately predict real-world performance and behaviour. One reason for this is the challenge in developing low cost, representative test beds with the degree of flexibility and mobility required. We have developed a Portable Wireless Ad hoc Node (PWAN) device which establishes multi-hop routes using the OLSR routing protocol. The PWAN’s performance has been investigated using two test bed configurations to evaluate its capacity under conditions of high node density in a short-range, multi-hop environment. Our results illustrate that …

A Theoretical Framework For Quality-Aware Cross-Layer Optimized Wireless Multimedia Communications, Song Ci, Haohong Wang, Dalei Wu

Department of Electrical and Computer Engineering: Faculty Publications

Although cross-layer has been thought as one of themost effective and efficient ways formultimedia communications over wireless networks and a plethora of research has been done in this area, there is still lacking of a rigorous mathematical model to gain indepth understanding of cross-layer design tradeoffs, spanning from application layer to physical layer. As a result, many existing cross-layer designs enhance the performance of certain layers at the price of either introducing side effects to the overall system performance or violating the syntax and semantics of the layered network architecture. Therefore, lacking of a rigorous theoretical study makes existing cross-layer …

Effects Of Wind Field Inhomogeneities On Doppler Beam Swinging Revealed By An Imaging Radar, B.L. Cheong, T.-Y. Yu, Robert D. Palmer, K.-F. Yang, Michael Hoffman, S.J. Frasier, F.J. Lopez-Dekker

Department of Electrical and Computer Engineering: Faculty Publications

In this work, the accuracy of the Doppler beam-swinging (DBS) technique for wind measurements is studied using an imaging radar—the turbulent eddy profiler (TEP) developed by the University of Mas- sachusetts, with data collected in summer 2003. With up to 64 independent receivers, and using coherent radar imaging (CRI), several hundred partially independent beams can be formed simultaneously within the volume defined by the transmit beam. By selecting a subset of these beams, an unprecedented number of DBS configurations with varying zenith angle, azimuth angle, and number of beams can be investigated. The angular distributions of echo power and radial …

Identifying And Explaining Map Quality Through Provenance: A User Study, Nicholas Ricky Del Rio, Paulo Pinheiro Da Silva

Departmental Technical Reports (CS)

Applications deployed on cyber-infrastructures often rely on multiple data sources and distributed compute resources to access, process, and derive results. When application results are maps, it is possible that non-intentional imperfections can get introduced into the map generation processes because of several reasons including the use of low quality datasets, use of data filtering techniques incompatible for the kind of map to be generated, or even the use of inappropriate mapping parameters, e.g., low-resolution gridding parameters. Without some means for accessing and visualizing the provenance associated with map generation processes, i.e., metadata about information sources and methods used to derive …

Equidecomposability (Scissors Congruence) Of Polyhedra In R^3 And R^4 Is Algorithmically Decidable: Hilbert's 3rd Problem Revisited, Vladik Kreinovich

Departmental Technical Reports (CS)

No abstract provided.

An Adaptive Multiobjective Evolutionary Approach To Optimize Artmap Neural Networks, Assem Kaylani

Electronic Theses and Dissertations

This dissertation deals with the evolutionary optimization of ART neural network architectures. ART (adaptive resonance theory) was introduced by a Grossberg in 1976. In the last 20 years (1987-2007) a number of ART neural network architectures were introduced into the literature (Fuzzy ARTMAP (1992), Gaussian ARTMAP (1996 and 1997) and Ellipsoidal ARTMAP (2001)). In this dissertation, we focus on the evolutionary optimization of ART neural network architectures with the intent of optimizing the size and the generalization performance of the ART neural network. A number of researchers have focused on the evolutionary optimization of neural networks, but no research has …

Efficient And Scalable Network Security Protocols Based On Lfsr Sequences, Saikat Chakrabarti

University of Kentucky Doctoral Dissertations

The gap between abstract, mathematics-oriented research in cryptography and the engineering approach of designing practical, network security protocols is widening. Network researchers experiment with well-known cryptographic protocols suitable for different network models. On the other hand, researchers inclined toward theory often design cryptographic schemes without considering the practical network constraints. The goal of this dissertation is to address problems in these two challenging areas: building bridges between practical network security protocols and theoretical cryptography. This dissertation presents techniques for building performance sensitive security protocols, using primitives from linear feedback register sequences (LFSR) sequences, for a variety of challenging networking applications. …

Optimizing Dynamic Logic Realizations For Partial Reconfiguration Of Field Programmable Gate Arrays, Matthew Parris

Electronic Theses and Dissertations

Many digital logic applications can take advantage of the reconfiguration capability of Field Programmable Gate Arrays (FPGAs) to dynamically patch design flaws, recover from faults, or time-multiplex between functions. Partial reconfiguration is the process by which a user modifies one or more modules residing on the FPGA device independently of the others. Partial Reconfiguration reduces the granularity of reconfiguration to be a set of columns or rectangular region of the device. Decreasing the granularity of reconfiguration results in reduced configuration filesizes and, thus, reduced configuration times. When compared to one bitstream of a non-partial reconfiguration implementation, smaller modules resulting in …

Dynamic Task Allocation In Mobile Robot Systems Using Utility Funtions, Scott Vander Weide

Electronic Theses and Dissertations

We define a novel algorithm based on utility functions for dynamically allocating tasks to mobile robots in a multi-robot system. The algorithm attempts to maximize the performance of the mobile robot while minimizing inter-robot communications. The algorithm takes into consideration the proximity of the mobile robot to the task, the priority of the task, the capability required by the task, the capabilities of the mobile robot, and the rarity of the capability within the population of mobile robots. We evaluate the proposed algorithm in a simulation study and compare it to alternative approaches, including the contract net protocol, an approach …

Delay Sensitive Routing For Real Time Traffic Over Ad-Hoc Networks, Dipika Darshana

Electronic Theses and Dissertations

Wireless ad hoc network consists of inexpensive nodes that form a mobile communication network. Due to limitations of the transmission range, the nodes rely on each other to forward packets such that messages can be delivered across the network. The selection of the path along which a packet is forwarded from the source node to the destination node is done by the routing algorithm. Most commonly used routing algorithms, though effective for non-real time applications, cannot handle real-time applications that require strict delay bounds on packet delivery. In this thesis, we propose a routing protocol that ensures timely delivery of …