Engineering Commons^™

Applied Analysis Of Ionic Polymer Metal-Composite Actuators, Siul Ruiz, Benjamin Mead, Woosoon Yim

College of Engineering: Graduate Celebration Programs

• IPMC is a type of smart material called an electroactive polymer
• Consists of an ionic polymer such as Nafion or Flemion and a conducive metal such as platinum or gold
• COMSOL multi-physics simulations accurately model the experimental displacement results
• Optimization performed using the multi-physics model to find the maximum deflection, force, and twisting
• Using the closed loop control system accurate IPMC tip location can be achieved
• This control system has been extended to function using a computer mouse as an input

Energy Audit In Wastewater Aeration System, Dinesh R. Kandel, Jacimaria R. Batista, Sajjad Ahmad

College of Engineering: Graduate Celebration Programs

To evaluate the energy consumption air to aeration basins in wastewater treatment aeration system and to compare the standard computations of oxygen demand and blower power requirements with the actual plant data.

Revisiting Blob Theory For Dna Diffusivity In Slitlike Confinement, Liang Dai, Douglas R. Tree, Johan R. C. Van Der Maarel, Kevin D. Dorfman, Patrick S. Doyle

Faculty Publications

Blob theory has been widely applied to describe polymer conformations and dynamics in nanoconfinement. In slit confinement, blob theory predicts a scaling exponent of 2/3 for polymer diffusivity as a function of slit height, yet a large body of experimental studies using DNA produce a scaling exponent significantly less than 2/3. In this work, we develop a theory that predicts that this discrepancy occurs because the segment correlation function for a semiflexible chain such as DNA does not follow the Flory exponent for length scales smaller than the persistence length. We show that these short length scale effects contribute significantly …

Enhancing In Vitro Production Of Exotic Proteins Utilizing Linear Dna Templates, Savannah Herdegen, Dr. Brad Bundy

Journal of Undergraduate Research

[Final report posting is embargoed pending publication.]

New Capabilities In Large-Scale Models In Computational Biology, Casey Abbott, Dr. John Hedengren

Journal of Undergraduate Research

Advances in biomedical research have lead to an increase of experimental data to be interpreted in the context of reaction pathways, molecular transport, and population dynamics. Kinetic modeling is one way employed to interpret this data and is used in the pharmaceutical industry in developing clinical trials for new medications [1]. One collection of kinetic models is built on the System Biology Markup Language (SBML). Many of these models have detailed reaction metabolic pathways that describe biological systems, including cause and effect relationships in the human body. While simulations of these biological systems have been successfully applied for many years, …

An Alternative Method To Prepare Cobalt Catalysts Using Salt Precursors, Trevor Seegmiller, Dr. Calvin Bartholomew

Journal of Undergraduate Research

Fischer-Tropsch synthesis (FTS) is the process for converting syngas (carbon monoxide and hydrogen) into liquid fuels such as gasoline and diesel. A cobalt or iron catalyst is required for the process. Cobalt catalysts have the highest effectiveness and stability in FTS; however, they are more expensive due to higher materials cost as well as the time-consuming and complex processes generally associated with manufacture.

Development Of A Fuel-Efficient Stove To Reduce Particulate Emissions, Geoffrey Lemon, Dr. Randy Lewis

Journal of Undergraduate Research

According to the World Health Organization, one of the leading causes of death in developing countries is respiratory disease, caused by inhalation of particulates from cooking stoves.¹ With this challenge in mind, our team of interdisciplinary engineering students worked for over two semesters on designing and implementing a more effective stove for the people in Matinga, Peru. With the help and feedback of faculty members and other teams within our Global Engineering Outreach class, we chose to design a modified “rocket stove.” This design was chosen to more completely combust the fuel, producing a much cleaner burning fire.

Gold Nanoparticle Conjugation With A2 Protein In Vlp For Symmetrical Alignment, Matthew Burnham, Dr. Brad Bundy

Journal of Undergraduate Research

A Virus-like Particle (VLP) is a nanostructure composed of many coat proteins. They differ from real viruses in that they are synthesized to be non-infectious. VLPs have many useful applications in vaccines, drug delivery, gene therapy, and material science¹. Last year, I attempted to create a high resolution image of the VLP Q-beta. This was to be accomplished by making modifications to the virus’ structure after its creation. Conjugating a gold nanoparticle to the Q-beta VLP-A2 protein complex would, in theory, provide a site of orientation and allow us to image the VLP (Figure 1). Although the goal …

Scaffold Design Of A Novel Nano-Particle For Single-Target Imaging, Chad Varner, Dr. Brad Bundy

Journal of Undergraduate Research

The purpose of this project has been to help develop a novel nano-imaging particle. Current methodologies have limitations that preclude them from being used for nanometric (1-500nm) imaging processes in living organisms. These include, but are not limited to, low signal to noise ratios, limited target specificity, and bio-incompatibility. To further the possibilities available for nano-imaging, we have attempted to create a scaffold, or framework, for a biocompatible nanoparticle that is capable of imaging specific targets in living systems.

Cell-Free Protein Synthesis Extract Preparation Methods, Troy Holland, Dr. Brad Bundy

Journal of Undergraduate Research

My ORCA project proposed to test and optimize various low capital cost cell lysis methods, while leaving the internal cell machinery intact and viable for cell-free protein synthesis research. Our cells of interest were a strain of the bacterium E. coli, and their cellular machinery consists of the chemicals and enzymes they use in their every-day life processes, including (and of particular interest to us) the synthesis of proteins. These proteins have an almost limitless number of potential applications in medicine, food services, and chemical production, so the various methods of protein synthesis are of significant importance, both financially, and …

Sensor Application Of Poly (Ethylene Glycol) Diacrylate Hydrogels Chemically-Anchored On Polymer Surface, Zhan Gao, Chang-Soo Kim, David B. Henthorn

Electrical and Computer Engineering Faculty Research & Creative Works

We demonstrate a device process combining two photo patternable polymers, poly (ethylene glycol) (PEG)-diacrylate-based-hydrogel and epoxy-based photoresist SU-8, to implement an optofluidic bioanalytical platform through a surface anchoring technique. As an exemplary sensor application, optical dissolved oxygen sensors are fabricated and their performance characterized. The PEG-rich hydrogel is used as a matrix material for the immobilization of oxygen-responsive fluorophore, dichlorotris (1, 10-phenanthroline) ruthenium (II) hydrate. This hydrogel is chemically anchored on the surface of negative-tone photoresist, SU-8, through a free radical reaction in which 1-hydroxycyclohexyl phenyl ketone served as the surface bound photo initiator. The sensor exhibits a reversible Stern-Volmer …

Multiscale Modeling Of Enzyme-Catalyzed Methanol Production By Particulate Methane Monooxygenase, Katherine K. Bearden

Doctoral Dissertations

In this work, the conversion of methane to methanol by the particulate Methane Monooxygenase (pMMO) enzyme is investigated using a multi-scale modeling approach. This enzyme participates in carbon cycling and aids in the removal of harmful atmospheric methane, converting it to methanol. The interaction between pMMO and a neighboring enzyme that is present in the same organism is studied, and the unknown pMMO active site is elucidated and tested for methane oxidation towards the production of methanol.

Fundamental knowledge of pMMO's mechanism is not fully understood. Understanding how this enzyme works in nature will provide information towards designing efficient synthetic …

Ipads In The Science Laboratory: Experience In Designing And Implementing A Paperless Chemistry Laboratory Course, Tiffany Hesser, Pauline Schwartz

Chemistry and Chemical Engineering Faculty Publications

In the fall of 2012, 20 General Chemistry Honors students at the University of New Haven were issued the new iPad 3 to incorporate these devices both in the classroom and the laboratory. This paper will focus on the integration of the iPad into the laboratory curriculum while creating a paperless experience, an environment where no paper would enter or be used for the laboratory over the course of the year. Specific apps were chosen that would allow for an easy transition of course materials into an electronic format. After a transition period for the students and instructor, the overall …

Comparison Of Biomass To Bio-Oils Reactor Systems: Direct Conversion Vs. Companion Coal Gasification, Alexandra Eicher

Honors Theses and Capstones

It is well known that the United States’ dependence on crude-oil negatively affects its economy, safety, and environment. To alleviate these negative consequences, a more economical and environmentally-friendly source of fuel, such as biomass, should be explored. The conversion of biomass to bio-oils involves the pyrolysis of biomass at about 500°C, thus requiring a great deal of heat. This heat source could be the excess waste heat from a coal gasifier.

As such, this report specifies the design of an industrial plant that produces bio-oils from biomass by using the waste heat from a coal gasifier. It is designed to …

Married Coal Gasification And Biomass Pyrolysis, Michael Balch

Honors Theses and Capstones

This project is a proposal to marry a coal gasification process to a biomass pyrolysis. Coal is pyrolized to produce syngas and a large amount of heat. The syngas is treated and fed to a Fischer-Tropsch process. The excess heat produces steam that is used to pyrolize biomass. The biomass produces char, gas, and vapor. The char and gas are recovered, and the vapor is condensed to produce bio-oil.

The proposed plant has a capacity of 1100 tons of biomass (550 dry tons) per day. I assumed an operating factor of 0.9 The plant could be operational within five years, …

Octanol/Water Partitioning Coefficients Of Pcb Mixtures For Environmental Fate And Transport, Phylicia Cicilio

Honors Theses and Capstones

Polychlorinated biphenyls (PCBs) are a human and environmental toxin introduced to the environment from the 1920’s to the 1970’s from manufacturing items such as transformers and capacitors. PCBs remain in the environment today due to their low water solubility and resistance to chemical reaction. Due to their properties PCBs bioaccumulate in the environment and pose health risks to animals and humans, as they are deemed a probable carcinogen by the EPA. Octanol-water partitioning coefficients are a means of measuring how PCBs will travel in the environment, either partitioning to water or into organic carbon. Octanol-water partitioning coefficients will be determined …

Kinetics Of Lipid Extraction From Microalgae, Brian Mcconnell

Honors Theses and Capstones

No abstract provided.

Extended Color Gamut For Flexographic Printing, Gaurav Dinesh Sheth

Masters Theses

The advancement in technology and the necessity to satisfy the increasing quality requirements has aroused the need for use of extended color gamut in flexographic printing. The information about extended gamut inks and ink systems is not easily available therefore, it is essential to define ink sets and color sequences that will produce optimal results in the flexographic printing process. The results were produced by evaluating color gamut volumes obtained by printing with four color process inks, and additional ink sequences, as well as by evaluating other print parameters that provide evidence in support of the research work. Special focus …

Biodiesel Reactor Design With Glycerol Separation To Increase Biodiesel Production Yield, Budy Rahmat, Imas Siti Setiasih, Roni Kastaman

Makara Journal of Technology

The study consisted of reactor design used for transesterification process, effect of glycerol separation on transesterification reaction, determination of biodiesel quality, and mass balance analysis. The reactor was designed by integrating circulated pump/stirrer, static mixer, and sprayer that intensify the reaction in the outer tank reactor. The objective was to reduce the use of methanol in excess and to shorten the processing time. The results showed that the reactor that applied the glycerol separation was able to compensate for the decreased use of the reactant methanol from 6:1 to 5:1 molar ratio, and changed the mass balance in the product, …

Development Of Seebeck-Coefficient Measurement Systems Using Kelvin-Probe Force Microscopy, Kazutoshi Miwa, Faiz Salleh, Hiroya Ikeda

Makara Journal of Technology

Thermoelectric device is investigated by a number of researchers in order to enhance the thermoelectric efficiency. It is known that the efficiency can be improved by quantum effect. However, it is difficult to measure the thermoelectric characteristics of nanometer-scale structures. Thus a new measurement method is expected to be developed. We propose to apply Kelvin-probe force microscopy (KFM) to characterization of thermoelectric materials. KFM can locally observe surface potential of Fermi energy of a sample without touching the sample surface. In the present paper, we estimate the Seebeck coefficient of thin Si-on-insulator layers using KFM.

Analyzing The Function Of Cartilage Replacements: A Laboratory Activity To Teach High School Students Chemical And Tissue Engineering Concepts, Julie N. Renner

Faculty Scholarship

A cartilage tissue engineering laboratory activity was developed as part of the Exciting Discoveries for Girls in Engineering (EDGE) Summer Camp sponsored by the Women In Engineering Program (WIEP) at Purdue University. Our goal was to increase awareness of chemical engineering and tissue engineering in female high school students through a laboratory activity that incorporated a number of National Research Council learning objectives for science and engineering. This manuscript describes the context of the activity, detailed instructions to perform the activity, and a summary of the feedback. As a result of the activity, participants knew more about the chemical engineering …

Agricultural Drought Pattern In West Java Using Thermal Vegetation Index From Modis-Terra Satellite, Dini Daruati, Rahmatulloh Rahmatulloh, Sri Hardiyanti Purwadhi

Makara Journal of Technology

This study examines agricultural drought paddy fields in West Java. The aims of this research are to know the pattern and distribution of paddy field drought in West Java and the correlation between drought and the physical characteristics. The agricultural drought is obtained from TVI (Thermal Vegetation Index) model. TVI is derived from MODIS Terra satellite image, which is the ratio between the LST (Land Surface Temperature) and EVI (Enhanced Vegetation Index). Physical factors studied are rainfall, l slope, geomorphology, soil drainage, and irrigation areas. The most severe drought occurred in September 2006 because of El Nino, covering 806,564 ha, …

Growth Of Crsi2 Nanostructures Using Crcl2 Powder On Si Substrates, Wen Li, Meng Erchao, Tomoji Matsushita, Shingo Oda, Daisuke Ishikawa, Kaito Nakane, Hirokazu Tatsuoka

Makara Journal of Technology

Chromium disilicide (CrSi2) nanostructures were grown by the exposure of Si (111) substrates to CrCl2 vapor in an argon gas flow at atmospheric pressure without using any metal catalyst. Dependence of the growth condition on the structural property was investigated. Hexagonal-shaped CrSi2 microrods were grown at 750 °C with 0.05 g of CrCl2. As the quantity of CrCl2 increased to 0.1 g, the bundle of CrSi2 nanowires with microrods and web-liked CrSi2 nanostructure with turning angles were grown at 750 °C and 700 °C, respectively. The preliminary discussion on the growth mechanism of CrSi2 micro- and nanostructures was carried out.

Biological Pretreatment Of Oil Palm Frond Fiber Using White-Rot Fungi For Enzymatic Saccharification, Euis Hermiati, Sita Heris Anita, Lucky Risanto, Dyah Styarini, Yanni Sudiyani, Achmad Hanafi, Haznan Abimanyu

Makara Journal of Technology

Oil palm frond is one type of lignocellulosic biomass abundantly and daily available in Indonesia. It contains cellulose which can be converted to glucose, and further processed to produce different kinds of value –added products. The aim of this research is to study the effects of biological pretreatment of oil palm frond (OPF) fiber using Phanerochaete chrysosporium and Trametes versicolor on the enzymatic saccharification of the biomass. The OPF fiber (40-60 mesh sizes) was inoculated with cultures of the two fungi and incubated at 27 °C for 4 weeks. The samples were taken after 1, 2, 3, and 4 weeks …

Electromagnetic Simulation For Thz Antenna-Coupled Microbolometers Operated At Room Temperature, Makoto Aoki, Masanori Takeda, Norihisa Hiromoto

Makara Journal of Technology

Room-temperature terahertz (THz) detectors with higher performance are necessary for utilizing the THz wave in various sensing, spectroscopy and imaging, but even the best ones in the present are still insufficient for the practical applications. This issue is essential especially in the region around 1 THz at which there exists a large technology gap between microwave and middle-infrared. Therefore, we study to develop an antenna-coupled microbolometer to achieve a high-performance THz detector operated at a room-temperature for sensing at around 1 THz frequency wave. In this paper, we present several important features and results obtained from electromagnetic simulations, which help …

Analysis Of Hole Lifetime In Soi Mosfet Single-Photon Detector, Dedy Septono Catur Putranto, Wei Du, Hiroaki Satoh, Atsushi Ono, Purnomo Sidi Priambodo, Djoko Hartanto, Hiroshi Inokawa

Makara Journal of Technology

Hole lifetime in the silicon-on-insulator (SOI) metal-oxide-semiconductor field-effect transistor (MOSFET) singlephoton detector was evaluated by the analysis of drain current histograms for different light intensities and substrate voltages. It was found that the peaks in the histogram corresponding to the larger number of stored holes grew as the gate bias decreased. This was attributed not to the increased light absorption efficiency or collection efficiency of the photo-generated holes, but to the prolonged hole lifetime presumably caused by the higher transverse electric field inside the body of SOI MOSFET.

Recognition System Of Indonesia Sign Language Based On Sensor And Artificial Neural Network, Endang Supriyati, Mohammad Iqbal

Makara Journal of Technology

Sign language as a kind of gestures is one of the most natural ways of communication for most people in deaf community. The aim of the sign language recognition is to provide a translation for sign gestures into meaningful text or speech so that communication between deaf and hearing society can easily be made. In this research, the Indonesian sign language recognition system based on flex sensors and an accelerometer is developed. This recognition system uses a sensory glove to capture data. The sensor data that are processed into feature vector are the 5-fingers bending and the palm acceleration when …

Performance Optimization Of Microbial Fuel Cell (Mfc) Using Lactobacillus Bulgaricus, Rita Arbianti, Tania Surya Utami, Heri Hermansyah, Deni Novitasari, Ester Kristin, Ira Trisnawati

Makara Journal of Technology

Electrical energy needs in Indonesia are expected to continue to rise. The use of petroleum as a source of energy still dominates, although oil reserves in Indonesia are increasingly being depleted. Therefore, there is a need to develop alternative sources of sustainable energy, such as microbial fuel cell (MFC). In this study, Lactobacillus bulgaricus was used as an electricity producer in a dual-chamber MFC reactor. We investigated the maximum electrical energy by varying the bacterial optical density (OD), the operational time of MFC, the reactor volume, the electrolyte solution, and the configuration of MFC reactor. In this study, the maximum …

Measuring Acoustic Attenuation Of Polymer Materials Using Drop Ball Test, Yi Zhang

Doctoral Dissertations and Master's Theses

Polymers are often used for vibration damping and energy absorption. The effect of a material in reducing the strength of sound waves traveling through it is called acoustic attenuation. In the past, attenuation has mostly been evaluated in the MHz frequency range, using a pulse generator and transmitting transducer as the wave source. However, most real acoustic activities occur at frequencies up to a few hundred kHz. Here, a simple drop ball mechanism is used to generate acoustic source waves in the kHz range, and the attenuation capacities of several solid materials are measured. The recorded waveforms substantially differ between …

Transforming Synthetic Biology With Cell-Free Systems, Arnaz Ranji, Jeffrey C. Wu, Bradley Charles Bundy, Michael C. Jewett

Faculty Publications

Cell-free synthetic biology offers an unprecedented level of control and freedom of design for understanding, harnessing, and expanding the capabilities of natural biological systems. Inspired by advances in synthetic biology projects in vivo, recent years have witnessed the emergence of cell-free systems not only as a testing ground for our ability to engineer and analyze biology, but also as technologies capable of efficient and scalable synthesis of complex biological products. Dominant efforts in the field include: programmable nucleic acid circuits; nanomachines; cell-free protein synthesis; cell-free metabolic engineering; and minimal cells. The goals are understanding why nature’s designs work the way …