Engineering Commons^™

Sustainable Production Of Novel Biomaterials In Escherichia Coli, Asif Rahman

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The biotechnology revenues in the United States exceeded $100 billion in 2010 and the potential impact of synthetic biological engineering has been identified nationally as an emerging technology to further expand the national bioeconomy. Synthetic biological engineering approaches biology from an engineering perspective to make biology easier to engineer. The potential to engineer microorganisms for novel applications can have far-reaching implications and benefits for society. Some of the potential applications range from biosensors, biofuels, therapeutics, and biomaterials.

In this study two biomaterials were produced in genetically engineered Escherichia coli: polyhydroxybutyrates (PHBs) and spider silk. PHBs are bioplastics that have …

Synthesis And Characterization Of Clickable Dendrimer Hydrogels For Ocular Drug Delivery, Jingfei Tian

Theses and Dissertations

Topical medication is a standard treatment for glaucoma. However, frequent dosing makes the therapy inconvenient and patient unfriendly. There is a great need to develop new topical formulations that provide long lasting noninvasive drug release. In this thesis, novel clickable dendrimer hydrogels for anti-glaucoma drug delivery were synthesized and characterized. Polyamidoamine (PAMAM) dendrimers have been widely applied for drug delivery. The physical characteristics they possess include monodispersity, water solubility, encapsulation ability, and a large number of surface groups. Polycationic PAMAM dendrimer G3 was surface modified with alkyne-PEG5-acid and then reacted with polyethylene glycol bisazide (PEG-BA, 1100 gmol-1) through click chemistry …

Neuroimage Analysis Of Traumatic Brain Injury In Human Patients, Hardik Doshi

Wayne State University Theses

CEREBRAL HEMODYNAMIC CHANGES IN MILD TRAUMATIC BRAIN INJURY AT THE ACUTE STAGE

by

Hardik J. Doshi

May 2014

Advisor: Dr. Zhifeng Kou

Major: Biomedical Engineering

Degree: Master of Science

There are more than 1.7 million reported traumatic brain injury (TBI) cases every year in the United States alone. Out of all these, more than 85% are mild TBI (mTBI) and it has significant socio-economic impacts. The motivation towards this study is to measure changes in the arterial cerebral blood flow (CBF) and venous oxygen saturation by combining Arterial Spin Labeling (ASL) and Susceptibility Weighted Imaging and Mapping (SWIM) techniques and …

Characterization Of A Human Powered Nebulizer Compressor For Resource Poor Settings, Christopher J. Hallberg, Mary Therese Lysaught, Christopher E. Zmudka, William K. Kopesky, Lars E. Olson

Biomedical Engineering Faculty Research and Publications

Background

Respiratory disease accounts for three of the ten leading causes of death worldwide. Many of these diseases can be treated and diagnosed using a nebulizer. Nebulizers can also be used to safely and efficiently deliver vaccines. Unfortunately, commercially available nebulizers are not designed for use in regions of the world where lung disease is most prevalent: they are electricity-dependent, cost-prohibitive, and not built to be reliable in harsh operating conditions or under frequent use.

To overcome these limitations, the Human Powered Nebulizer compressor (HPN) was developed. The HPN does not require electricity; instead airflow is generated manually through a …

Emerging Optical Techniques For Detection Of Oral, Cervical And Anal Cancer In Low-Resource Settings, Bing Yu, Daron G. Ferris, Yang Liu, Vivek K. Nagarajan

Biomedical Engineering Faculty Research and Publications

Cancers of the oral and anogenital regions are a growing global health problem that disproportionately impact women and men living in developing countries. The high death rate in developing countries is largely due to the fact that these countries do not have the appropriate medical infrastructure and resources to support the organized screening and diagnostic programs that are available in the developed world. Emerging optical diagnostics techniques, such as optical spectroscopy, reflectance imaging, and fluorescence imaging, are noninvasive techniques that are sensitive to multiple cancer biomarkers and have shown the potential as a cost–effective and fast tool for diagnosis of …

Biological Scaffolds For Peripheral Vascular Surgery, George Fercana

All Dissertations

The gold standards for small diameter peripheral vascular graft replacement are autologous arteries or veins; however, one-third of patients lack such vessels due to previous vessel harvesting or advanced vascular disease. A promising approach for patients in this category is tissue engineering with off-the-shelf biological vascular grafts. Three small diameter acellular scaffolds were developed and evaluated as vascular grafts. Porcine renal arteries (2-3 mm diameter, 20 mm length) were decellularized by immersion and stabilized with penta-galloyl glucose (PGG) with and without subsequent heparinization via carbodiimide chemistry. Bovine mammary (4-6 mm ID, 250 mm length) and femoral arteries (6-8 mm ID, …

An Analysis Of Eliminating Electroosmotic Flow In A Microfluidic Pdms Chip, Cecile D. Redington

Master's Theses

The goal of this project is to eliminate electroosmotic flow (EOF) in a microfluidic chip. EOF is a naturally occurring phenomenon at the fluid-surface interface in microfluidic chips when an electric field is applied across the fluid. When isoelectric focusing (IEF) is carried out to separate proteins based on their surface charge, the analytes must remain in the separation chamber, and not migrate to adjacent features in the microfluidic chip, which happens with EOF.

For this project, a microfluidic chip was designed and commissioned to be photolithographically transferred onto a Si wafer. A PDMS component was then casted on the …

Synthetic Polymeric Carbohydrates Recognized Toxoplasma Gondii Tachyzoites And Induced Early Phagocytosis By Macrophages, Souzan Hussain Eassa

Theses and Dissertations

Toxoplasmosis is a parasitic disease caused by the intracellular protozoan Toxoplasma gondii your words (T. gondii your words) that affects most types of warm-blooded vertebrate cells. Up to one third of the humans population in the world is chronically infected by this parasite. Human and animals at risk for toxoplasmosis include fetuses, newborns, and immunologically impaired patients. To date, there is no vaccine available and no drug has a successful effective against chronic form of toxoplasmosis. Recent Toxoplasma your words diagnostic methods showed high false positive results and cannot detect the parasite in the early infection stage. Early diagnosis of …

Device Engineering For Infectious Disease Diagnosis Using Isothermal Dna Amplification And Lateral Flow Detection, Kristina Roskos

KGI Theses and Dissertations

Technologies that enable infectious diseases diagnosis in low-resource settings could greatly facilitate effective treatment and containment of such diseases. Nucleic acid amplification testing can be used to identify pathogens, but typically requires highly-trained personnel and large, expensive lab equipment, neither of which is available in low-resource settings. Our overall goal is to develop a portable diagnostic system that utilizes a low-cost, disposable, mesofluidic cartridge and a handheld electronics unit to perform fully-integrated nucleic acid testing at the point of care in low-resource settings. As a first step toward this goal, we developed a subunit to execute isothermal nucleic acid amplification …

Department Of Biological Systems Engineering Newsletter, Volume 7, Number 2, April 2013

BSE Department Magazine

No abstract provided.

Biomedical Advancements In Injury Recovery, Performance Enhancement, And Mechanical Assistance Applied To Athletics, Matthew Russell

Biomedical Engineering

Athletics is constantly changing, and athletes are continually getting bigger, faster, and stronger. At the same time, biomedical technology and innovation is rapidly developing. New methods of injury recovery, genetic enhancement, and prosthetic assistance are being assimilated into the athletic world. The up and coming athlete needs to be aware of all of the usable information around them. This project is an accumulation of some of the cutting edge advancements in those fields. Platelet Rich Plasma Injections, Frequency Specific Microcurrent Treatment, and Silk Polymer Anterior Cruciate Ligament Replacement are innovative new ways to treat common sports injuries. Performance enhancement has …

Automated Point-Of-Care Image Processing Methodology For The Diagnosis Of Malaria, Michael B. Jorgensen

Master's Theses

Malaria has profoundly influenced human history for over four thousand years and despite numerous attempts at eradication, the prevention, diagnosis, and treatment of malaria have been largely ineffective. More than five hundred million people are affected by malaria every year resulting in over one million deaths. Drug resistance development by the parasite has diminished the effectiveness of numerous treatment options due, in part, to overtreatment of negative patients based on insufficient clinical algorithms and diagnostic methods. The goal of this research was to develop an image analysis algorithm to diagnose malaria with a high degree of sensitivity and specificity in …

Evaluation Of Endogenous Allergens For The Safety Evaluation Of Genetically Engineered Food Crops: Review Of Potential Risks, Test Methods, Examples And Relevance, Richard E. Goodman, Rakhi Panda, Harsha Ariyarathna

Department of Food Science and Technology: Faculty Publications

The safety of food produced from genetically engineered (GE) crops is assessed for potential risks of food allergy on the basis of an international consensus guideline outlined by the Codex Alimentarius Commission (2003). The assessment focuses on evaluation of the potential allergenicity of the newly expressed protein(s) as the primary potential risk using a process that markedly limits risks to allergic consumers. However, Codex also recommended evaluating a second concern, potential increases in endogenous allergens of commonly allergenic food crops that might occur due to insertion of the gene. Unfortunately, potential risks and natural variation of endogenous allergens in non-GE …

Bacillus Thuringiensis: Transgenic Crops, Julie A. Peterson, John J. Obrycki, James D. Harwood

Department of Entomology: Faculty Publications

Bacillus thuringiensis (Bt) crops, genetically modified to express insecticidal toxins that target key pests of corn, cotton, rice, potato, and other crops, have been rapidly adopted and have become dominant fixtures in agroecosystems throughout the world. Due to the constitutive nature of Bt toxin expression, insecticidal proteins may be found in nearly all plant tissues, presenting multiple sources for Bt toxins to enter the environment, thus creating complex direct and indirect pathways for non-target organisms to be exposed to insecticidal proteins. The environmental impacts of Bt crops have been widely debated, although both benefits and risks do exist. Benefits of …

A Watershed Scale Evaluation Of Selected Second Generation Biofeedstocks On Water Quality, Gurdeep Singh

Graduate Theses and Dissertations

This study compares a novel simulation approach to the conventional Soil and Water Assessment Tool (SWAT) modeler's approach for targeting biofuel crop production on marginal lands. In conventional SWAT modeling approach, non-spatial definition of hydrological response units (HRUs) results in the simulation of biofuel crops on both marginal and non-marginal land. This study provides an alternative approach in which a marginal-land raster was integrated into the land use and land cover (LULC) raster in such a way that the land uses were divided into marginal and non-marginal components. This modified LULC was used for model setup which resulted in marginal …

Analysis Of Tissue Engineering Strategies For Bone-Related Applications, Timothy Buirkle

Theses

Over the past few decades, tissue engineering approaches have pushed their way to the forefront of biotechnological research and development, serving a wide variety of applications. This research utilizes quantitative methods to analyze the outcome of two bone tissue engineering studies. In an in vivo study, the use of Negative Pressure Wound Therapy (NPWT) in combination with stem cell-loaded scaffolds was investigated for the repair of large bone defects. Quantitative histological analysis was performed by determining both the percentage of cells proliferating (BrdU), as well as cells expressing bone-specific markers of alkaline phosphatase (A L P) in the defect. Total …

Functional Genomics As A Tool To Define A Molecular Signature Of Effective Vaccination Against Foot And Mouth Disease Virus, Jose Chabalgoity

Vaccine Technology IV

No abstract provided.

Formulation And Stability Of A Chikungunya Virus-Like Particle (Chikv Vlp) Based Vaccine, Rhicard Schwartz

Vaccine Technology IV

No abstract provided.

Rift Valley Fever: Next Generation Vaccines For An Old Foe, Brian Bird

Vaccine Technology IV

No abstract provided.

Conference Program, Engineering Conferences International

Vaccine Technology IV

No abstract provided.

Challenges In Batch Production Of Malaria Vaccines, Nicolas Havelange

Vaccine Technology IV

No abstract provided.

Establishing Human Vaccine Manufacturing In Southern Africa, Morena Makhoana

Vaccine Technology IV

No abstract provided.

Department Of Biological Systems Engineering Newsletter, Volume 8, Number 1, April 2012

BSE Department Magazine

No abstract provided.

Accounting For Indirect Land-Use Change In The Life Cycle Assessment Of Biofuel Supply Chains, Susan Tarka Sanchez, Jeremy Woods, Mark Akhurst, Matthew Brander, Michael O'Hare, Terence P. Dawson, Robert Edwards, Adam J. Liska, Rick Malpas

Adam Liska Papers

The expansion of land used for crop production causes variable direct and indirect greenhouse gas emissions; and other economic, social and environmental effects. We analyze the use of life cycle analysis (LCA) for estimating the carbon intensity of biofuel production from indirect land-use change (ILUC). Two approaches are critiqued; direct, attributional life cycle analysis (ALCA) and consequential life cycle analysis (CLCA). A proposed hybrid “combined model” of the two approaches for ILUC analysis relies on first defining the system boundary of the resulting full LCA. Choices are then made as to the modeling methodology (economic equilibrium or cause-effect), data inputs, …

The Biological Systems Engineering Program In Nebraska 1895-2011, William Splinter

Department of Agricultural and Biological Systems Engineering: Faculty Publications

4. Preface: How Mechanization Has Impacted Food Production THE PIONEERS WHO ESTABLISHED THIS DEPARTMENT 8 Oscar Van Pelt Stout 10 Charles Russ Richards 12 J. Brownlee Davidson 14 Leon W. Chase FORMER FACULTY AND THEIR CONTRIBUTIONS 18 Laurence Froyd Seaton 20 Ivan D.Wood 22 Oscar W. Sjogren 23 Chauncey W. Smith 25 Elmer E. Brackett 27 Claud Kedzie Shedd 29 Ruby M. Loper 31 Lester F. Larsen 33 Lloyd W. Hurlbut 36 Rollin Schnieder 39 Howard D. Wittmuss 41 Deon Axthelm 46 Paul. E. Fischbach 48 Stuart O. Nelson 51 Kenneth von Bargen 56 John R. Davis 58 Robert W. …

Global Estimation Of Evapotranspiration Using A Leaf Area Index-Based Surface Energy And Water Balance Model, H. Yan, S.Q. Wang, David P. Billesbach, Walter Oechel, J.H. Zhang, Tilden Meyers, Ta. Martin, Roser Matamala, Dennis D. Baldocchi, G. Bohrer, D. Dragoni, R. Scott

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Studies of global hydrologic cycles, carbon cycles and climate change are greatly facilitated when global estimates of evapotranspiration (E) are available. We have developed an air-relative-humidity-based two-source (ARTS) E model that simulates the surface energy balance, soil water balance, and environmental constraints on E. It uses remotely sensed leaf area index (L_ai) and surface meteorological data to estimate E by: 1) introducing a simple biophysical model for canopy conductance (G_c), defined as a constant maximum stomatal conductance g_smax of 12.2mm s⁻¹multiplied by air relative humidity (R_{h …}

Methamphetamine Administration Targets Multiple Immune Subsets And Induces Phenotypic Alterations Suggestive Of Immunosuppression., Robert Z. Harms, Brenda M. Morsey, Craig W. Boyer, Howard S. Fox, Nora E. Sarvetnick

Journal Articles: Regenerative Medicine

Methamphetamine (Meth) is a widely abused stimulant and its users are at increased risk for multiple infectious diseases. To determine the impact of meth on the immune system, we utilized a murine model that simulates the process of meth consumption in a typical addict. Our phenotypic analysis of leukocytes from this dose escalation model revealed that meth affected key immune subsets. Meth administration led to a decrease in abundance of natural killer (NK) cells and the remaining NK cells possessed a phenotype suggesting reduced responsiveness. Dendritic cells (DCs) and Gr-1(high) monocytes/macrophages were also decreased in abundance while Gr-1(low) monocytes/macrophages appear …

Leaching Of Potential Hazardous Elements Of Coal Cleaning Rejects, Luis F.O. Silva, Maria Izquierdo, Xavier Querol, Robert B. Finkelman, Marcos L.S. Oliveira, Marcus Wollenschlager, Mark R. Towler, Rafael Pérez-López, Felipe Macias

Chemical and Biochemical Engineering Faculty Research & Creative Works

The geochemical characteristics of coal cleaning rejects (CCR) in Santa Catarina State, Brazil, were investigated. Around 3.5 million ton/ year of coal waste are dumped in Santa Catarina State. Coal beneficiation by froth flotation results in large amounts of CCR composed of coaly and mineral matter, the latter characterized by the occurrence of sulphide minerals and a broad array of leachable elements. The total and leachable contents of more than 60 elements were analyzed. Atmospheric exposure promotes sulphide oxidation that releases substantial sulphate loads as well as Ca²⁺, K⁺, Mg²⁺, Cl- and Al^{3+ …}

Department Of Biological Systems Engineering Newsletter, Volume 7, Number 1, March 2011

BSE Department Magazine

No abstract provided.

Race- And Sex-Related Differences In Retinal Thickness And Foveal Pit Morphology, Melissa Wagner-Schuman, Adam M. Dubis, Rick Nordgren, Yuming Lei, Daniel Odell, Hellen Chiao, Eric Weh, William Fischer, Yusufu N. Sulai, Alfredo Dubra, Joseph Carroll

Biomedical Engineering Faculty Research and Publications

Purpose.

To examine sex- and race-associated differences in macular thickness and foveal pit morphology by using spectral-domain optical coherence tomography (SD-OCT).

Methods.

One hundred eighty eyes of 90 healthy patients (43 women, 47 men) underwent retinal imaging with spectral-domain OCT. The lateral scale of each macular volume scan was corrected for individual differences in axial length by ocular biometry. From these corrected volumes, Early Treatment Diabetic Retinopathy Study (ETDRS) grids of retinal thickness were generated and compared between the groups. Foveal morphology was measured with previously described algorithms.

Results.

Compared with the Caucasians, the Africans and African Americans had reduced …