Philosophy of Science Commons^™

Emergence, Scale, And The Layered Model Of Biological Systems, Katie Morrow

Honors Projects

The layered model of the world—the view that the physical universe is in some important sense ontologically stratified into levels—has commonly been applied in a variety of philosophical contexts, particularly in discussions of reductionism about causation, properties, or theories in science. In this paper I question whether this model, as traditionally understood, adequately reflects a contemporary scientific understanding of the world. Utilizing the layered model, philosophers have tended to focus on composition as the salient interlevel relationship, and to describe systems at temporal instants; while biologists stress the importance of the spatiotemporal scale of description and the environment in governing …

Psychotherapy And The Embodiment Of The Neuronal Identity: A Hermeneutic Study Of Louis Cozolino's (2010) The Neuroscience Of Psychotherapy: Healing The Social Brain , Ari Simon Natinsky

Antioch University Dissertations & Theses

In recent years, there have been several ways in which researchers have attempted to integrate psychotherapy and neuroscience research. Neuroscience has been proposed as a method of addressing lingering questions about how best to integrate psychotherapy theories and explain their efficacy. For example, some psychotherapy outcome studies have included neuroimaging of participants in order to propose neurobiological bases of effective psychological interventions (e.g., Paquette et al., 2003). Other theorists have used cognitive neuroscience research to suggest neurobiological correlates of various psychotherapy theories and concepts (e.g., Schore, 2012). These efforts seem to embody broader historical trends, including the hope that neuroscience …

Fitness: Philosophical Problems, Grant Ramsey, Charles H. Pence

Faculty Publications

Fitness plays many roles throughout evolutionary theory, from a measure of populations in the wild to a central element in abstract theoretical presentations of natural selection. It has thus been the subject of an extensive philosophical literature, which has primarily centred on the way to understand the relationship between fitness values and reproductive outcomes. If fitness is a probabilistic or statistical quantity, how is it to be defined in general theoretical contexts? How can it be measured? Can a single conceptual model for fitness be offered that applies to all biological cases, or must fitness measures be case-specific? Philosophers have …

Removing The Classical Landmark: Assessing An Epistemology Governed By Methodological Naturalism, Kegan Shaw

Masters Theses

This paper proposes to assess the naturalist project in epistemology with an eye towards exposing the project as deficient for serving as a robust epistemological project. Epistemologists treasure a certain family of questions and burden themselves with a number of specific concerns the most important of which, I think, cannot be answered by the epistemological naturalist. Ignoring these questions, I will argue, essentially amounts to a dismissal of the principle tension that primarily motivates and properly guides epistemological theorizing. This tension is the familiar appearance vs. reality distinction and characterizes what I am calling the classical landmark or boundary-stone for …

The Stories Of Environmental Ethicists In Word And Image, Camille Robins

Scripps Senior Theses

The Stories of Environmental Ethicists in Word and Image captures the spirit of three local people: John B. Cobb, Jr., Rosemary Radford Ruether, and Dean Freudenberger. As teachers, writers, activists, and members of the progressive retirement community Pilgrim Place, they’ve had a significant influence on the global environmental movement. The photographs and small essays in this project highlight who they are and what they’ve done, and how they continue to shape contemporary intellectual discourse. An analysis of how portrait photographers use images to tell stories and how they incorporate text in their photographic collections to create fuller, more robust pictures …

Staffan Müller-Wille And Hans-Jörg Rheinberger, A Cultural History Of Heredity, Charles H. Pence

Faculty Publications

No abstract provided.

Oyun: A New, Free Program For Iterated Prisoner’S Dilemma Tournaments In The Classroom, Charles H. Pence, Lara Buchak

Faculty Publications

Evolutionary applications of game theory present one of the most pedagogically accessible varieties of genuine, contemporary theoretical biology. We present here Oyun (oy-oon, http://charlespence.net/oyun), a program designed to run iterated prisoner's dilemma tournaments, competitions between prisoner's dilemma strategies developed by the students themselves. Using this software, students are able to readily design and tweak their own strategies, and to see how they fare both in round-robin tournaments and in “evolutionary” tournaments, where the scores in a given “generation” directly determine contribution to the population in the next generation. Oyun is freely available, runs on Windows, Mac, and Linux computers, …

Following The Trail Of Ants: An Examination Of The Work Of E.O. Wilson, Samantha Kee

Writing Across the Curriculum

No abstract provided.

Schrödinger And Nietzsche On Life: The Eternal Recurrence Of The Same, Babette Babich

Working Papers

Schrödinger and Nietzsche on Life: The Eternal Recurrence of the Same

This essay explores Schrödinger’s reflections on measurement, consciousness, and personal identity. Schrödinger’s, What Is Life? is read together with Nietzsche’s own reflections on the same question, in his aphorism What is Life? together with Nietzsche’s teaching of the eternal return of the selfsame. Schrödinger’s own thinking is influenced as is Nietzsche’s by Schopenhauer but Schrödinger also has the Vedic tradition as this influenced Schopenhauer himself in view.

Collaboration Using Open Notebook Science In Academia, Andrew Lang, Jean-Claude Bradley, Steven Koch, Cameron Neylon

College of Science and Engineering Faculty Research and Scholarship

Technology has a profound effect on how scientists can communicate with each other. This affects how quickly science can progress and what kinds of collaboration are possible. Although the printing press and the subsequent establishment of scientifi c journals dramatically increased the ability of researchers to disseminate their results and ideas, close collaborations between geographically separated individuals had to await the availability of telecommunication technologies, particularly the development of the Internet. Today, the ubiquity of sophisticated and easy - to - use tools to exchange information is enabling the creation of a “ shared presence ” between people, regardless of …

Darwinian Populations And Natural Selection, Grant Ramsey, Hope Hollocher, Agustín Fuentes, Charles H. Pence, Edwin Siu

Faculty Publications

No abstract provided.

The Role Of Causal Processes In The Neutral And Nearly Neutral Theories, Michael R. Dietrich, Roberta L. Millstein

Dartmouth Scholarship

The neutral and nearly neutral theories of molecular evolution are sometimes characterized as theories about drift alone, where drift is described solely as an outcome, rather than a process. We argue, however, that both selection and drift, as causal processes, are integral parts of both theories. However, the nearly neutral theory explicitly recognizes alleles and/or molecular substitutions that, while engaging in weakly selected causal processes, exhibit outcomes thought to be characteristic of random drift. A narrow focus on outcomes obscures the significant role of weakly selected causal processes in the nearly neutral theory.

Paradigm Shifts And New Worldviews: Kuhn, Laudan And Discovery In Molecular Biology, Priya Venkatesan

Reconstruction: Studies in Contemporary Culture

[Editors' Introduction]

The author poses an alternate set of ideas concerning paradigms, normal science, research traditions and scientific revolution on the basis of the unique and inherently distinctive development of molecular biology and genetics; for, a new set of conceptual tools concerning scientific progress are required for an adequate understanding of how biological processes were elucidated under the scientific auspices of the central dogma of the genetic code. This essay concentrates on a limited study of three aspects in genetics: the study of chromosome structure, dynamics and function, reverse transcriptases, and the discovery of RNA catalysts. In attempting to analyze …

Rethinking Mechanistic Explanation, Stuart Glennan

Scholarship and Professional Work - LAS

Philosophers of science typically associate the causal-mechanical view of scientific explanation with the work of Railton and Salmon. In this paper I shall argue that the defects of this view arise from an inadequate analysis of the concept of mechanism. I contrast Salmon's account of mechanisms in terms of the causal nexus with my own account of mechanisms, in which mechanisms are viewed as complex systems. After describing these two concepts of mechanism, I show how the complex-systems approach avoids certain objections to Salmon's account of causal-mechanical explanation. I conclude by discussing how mechanistic explanations can provide understanding by unification.

How Do We Know There Is A Population-Environment Problem?, Peter J. Taylor

Working Papers on Science in a Changing World

Five fictional friends of the author have agreed to meet and talk, hoping that he was right when he claimed that discussion crossing the usual boundaries of their fields would enrich their different inquiries and concerns. Ecolo, a natural and human ecologist, breaks the ice. He wants to marshall scientific knowledge to persuade others of the seriousness of the population problem. He is questioned by Philoso, whose philosophical bent leads her to observe the models that people use and to ask how they support the claims they make. In turn, the other three join in: Activo, an activist who is …

Apparent Interactions In Community Models: A Challenge For Theoretical Ecology, Peter J. Taylor

Working Papers on Science in a Changing World

The primary aim of this working paper is to challenge theoretical ecologists to clarify the intended status of any simple model that they use. If we restrict our attention to a subcommunity and treat it as if it were the full community, we need to invoke apparent interactions that incorporate the effects of unspecified or hidden variables as well as direct interactions. This position resembles that of previous discussions of apparent competition (Holt 1977), indirect effects (Lawlor 1979), and ecological abstraction (Schaffer 1981), but my definition of apparent interactions differs from those stated or implied by these authors. I advance …

The Relationship Between Mathematical Expression And Biological Insight: Some Issues In Community Ecology Modeling, Exemplified By The Logistic Equation, Peter J. Taylor

Working Papers on Science in a Changing World

The relationship between mathematical expression and biological insight is a central problem for modelers in community ecology. In this paper I distinguish three interpretations of this relationship: models as redescriptions as observations; models as capturing fundamental or generative biological relations; and models as an aid in exploring how to formulate the inquiries we put to nature. I aim to show that we can reduce ambiguities and confusion and ecological theory if we hold the different interpretations clearly in mind. I conclude by advancing an overall strategy of model building—de/composition—in which each of the interpretations plays a role. The logistic equation, …

Pauline N. King's Review Of Michael E. Hoare's Edition Of The Resolution Journal Of Johann Reinhold Forster, 1772-1775, Pauline N. King

Pacific Studies

No abstract provided.

Scholasticism An Intellectual Basis And Unifying Principle Of Modern Science, Alice V. Johnson

Electronic Theses and Dissertations

Amid the almost uninterrupted disintegration of systems during the last three centuries, the philosophy of St. Thomas has alone been able to stand the shock of criticism; it alone has proved sufficiently solid and comprehensive to serve as an intellectual basis and unifying principle for all the new facts and phenomena brought to light by modern science.