Digital Commons Network^™

Differentially Disrupted Spinal Cord And Muscle Energy Metabolism In Spinal And Bulbar Muscular Atrophy, Danielle Debartolo, Frederick Arnold, Y Liu, Elana Molotsky, Hsin-Yao Tang, Diane Merry

Department of Biochemistry and Molecular Biology Faculty Papers

Prior studies showed that polyglutamine-expanded androgen receptor (AR) is aberrantly acetylated and that deacetylation of the mutant AR by overexpression of nicotinamide adenine dinucleotide-dependent (NAD+-dependent) sirtuin 1 is protective in cell models of spinal and bulbar muscular atrophy (SBMA). Based on these observations and reduced NAD+ in muscles of SBMA mouse models, we tested the therapeutic potential of NAD+ restoration in vivo by treating postsymptomatic transgenic SBMA mice with the NAD+ precursor nicotinamide riboside (NR). NR supplementation failed to alter disease progression and had no effect on increasing NAD+ or ATP content in muscle, despite producing a modest increase of …

Do Crows Have Culture?, Sao Mai Nguyen

D.U.Quark

No abstract provided.

Strategies Leaders Of U.S. Laboratory Testing Organizations Use To Maximize Customer Satisfaction, Kurt Clarkson

Walden Dissertations and Doctoral Studies

Maximizing customer satisfaction is vital for U.S. laboratory testing organizations to succeed within a competitive industry. Leaders of U.S. laboratories are concerned with customer satisfaction because dissatisfied customers can negatively impact customer retention, profitability, and firms’ competitiveness. Grounded in the social exchange theory, the purpose of this qualitative multiple case study was to explore strategies that leaders of U.S. laboratory testing organizations implemented to maximize customer satisfaction. The participants were five leaders of laboratories in the southeast United States that held current ISO 17025 certification, were non-medical testing laboratories, and received positive online customer reviews. Data were collected from semistructured …

Temporospatial Deep Learning Strategies For Prediction Of Disease Progression In Radiology, John D. Mayfield

USF Tampa Graduate Theses and Dissertations

While the fields of machine learning and medicine are deeply rooted in axiomatic scientific principles, there is an element of art that makes the practice imperfect, yet innately human. As the two fields have seen the greatest overlap in their collective history, there remains a chasm between them in terms of practical translation for the patients who desire and deserve personalized medicine. As presented in this dissertation, I and my collaborators have contributed to the groundwork for future exploration of predicting disease progression by identifying signals within sequential medical imaging to provide a temporospatial relationship upon which we can make …

A Novel Micropeptide, Slitharin, Exerts Cardioprotective Effects In Myocardial Infarction, Ahmed G. E. Ibrahim, Alessandra Ciullo, Shukuro Yamaguchi, Chang Li, Travis Antes, Xaviar Jones, Liang Li, Ramachandran Murali, Innokentiy Maslennikov, Niveda Sundararaman, Daniel Soetkamp, Eugenio Cingolani, Jennifer Van Eyk, Eduardo Marbán

Pharmacy Faculty Articles and Research

Purpose: Micropeptides are an emerging class of proteins that play critical roles in cell signaling. Here, we describe the discovery of a novel micropeptide, dubbed slitharin (Slt), in conditioned media from Cardiosphere-derived cells (CDCs), a therapeutic cardiac stromal cell type.

Experimental design: We performed mass spectrometry of peptide-enriched fractions from the conditioned media of CDCs and a therapeutically inert cell type (human dermal fibrobasts). We then evaluated the therapeutic capacity of the candidate peptide using an in vitro model of cardiomyocyte injury and a rat model of myocardial infarction.

Results: We identified a novel 24-amino acid micropeptide …

Financial Variables And Their Effects On The Development Of Bank Credit And Productive Sectors In Iraq Using A Path Analysis Model, Saif Ali Hassan, Salah Mahdi Abbas Al-Birmani

Journal of Economics and Administrative Sciences

This study aims to measure and analyze the direct and indirect effects of the financial variables, namely (public spending, public revenues, internal debt, and external debt), on the non-oil productive sectors with and without bank credit as an intermediate variable, using quarterly data for the period (2004Q1–2021Q4), converted using Eviews 12. In order to measure the objective of the study, the path analysis method was used using IBM SPSS-AMOS. The study concluded that the direct and indirect effects of financial variables have a weak role in directing bank credit towards the productive sectors in Iraq, which amounted to (0.18), as …

Deciphering How Uropathogenic Escherichia Coli Defends Itself Against The Neutrophilic Oxidant Hypochlorous Acid, Sadia Sultana

Theses and Dissertations

The objective of this dissertation was to investigate how uropathogenic Escherichia coli (UPEC) responds to and defends one of the most potent oxidants produced in neutrophils, hypochlorous acid (HOCl).While most bacteria have no negative effect on human health or are even beneficial, some pathogenic species can cause serious infections, resulting in increased morbidity and mortality. However, the immune system allows the host to efficiently fight back and eradicate pathogens. Innate immune cells (i.e., neutrophils) generate reactive oxygen and chlorine species (RO/CS) to kill invading pathogens, among which HOCl is considered the most potent and abundant one. HOCl exerts its bactericidal …

Ucc Minutes 3-5-24, Angela Brock

UCC Agendas/Minutes

No abstract provided.

Muc20 Regulated By Extrachromosomal Circular Dna Attenuates Proteasome Inhibitor Resistance Of Multiple Myeloma By Modulating Cuproptosis, Xiaobin Wang, Yingqing Shi, Hua Shi, Xiaoyu Liu, Aijun Liao, Zhuogang Liu, Robert Z Orlowski, Rui Zhang, Huihan Wang

Faculty, Staff and Student Publications

BACKGROUND: Proteasome inhibitors (PIs) are one of the most important classes of drugs for the treatment of multiple myeloma (MM). However, almost all patients with MM develop PI resistance, resulting in therapeutic failure. Therefore, the mechanisms underlying PI resistance in MM require further investigation.

METHODS: We used several MM cell lines to establish PI-resistant MM cell lines. We performed RNA microarray and EccDNA-seq in MM cell lines and collected human primary MM samples to explore gene profiles. We evaluated the effect of MUC20 on cuproptosis of PI-resistant MM cells using Co-immunoprecipitation (Co-IP), Seahorse bioenergetic profiling and in vivo assay.

RESULTS: …

Overcoming The Barriers To Teaching Teamwork To Undergraduates In Stem, Gregory R. Goldsmith, Miranda L. Aiken, Hector M. Camarillo-Abad, Kamal Diki, Daniel L. Gardner, Mario Stipčić, Javier F. Espeleta

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

There is widespread recognition that undergraduate students in the life sciences must learn how to work in teams. However, instructors who wish to incorporate teamwork into their classrooms rarely have formal training in how to teach teamwork. This is further complicated by the application of synonymous and often ambiguous terminology regarding teamwork that is found in literature spread among many different disciplines. There are significant barriers for instructors wishing to identify and implement best practices. We synthesize key concepts in teamwork by considering the knowledge, skills, and attitudes (KSAs) necessary for success, the pedagogies and curricula for teaching those KSAs, …

Executive Committee - Agenda 3/5/2024, Academic Senate

Academic Senate Agendas

No abstract provided.

Experience Of Parents Caring For A Chid With An Acquired Disability, Brad Phillips

Dissertations

Parents caring for a child with an acquired disability often report a negative impact on physical, psychological, emotional, and spiritual health associated with caregiver burden related to their child's complex health needs. This is further complicated by additional challenges related to the loss of a previously healthy child. Traditional patterns of loss follow linear, time-bound stages that have been observed to be unrelated to the experiences of these specific parents and their families. Therefore, the concept transforming loss has been developed to better understand how these parents navigate loss and find meaning in spite of their suffering.

The purpose of …

Potential Protein Signatures For Recurrence Prediction Of Ischemic Stroke, Chengyi Zhang, Yang Liu, Huimin Zhu, Xinying Huang, Cang Guo, Si Cheng, Meng Yuan, Yong Jiang, Xia Meng, S Claiborne Johnston, Yongjun Wang, Wei-Na Jin, Fu-Dong Shi

Faculty, Staff and Student Publications

Background: Acute ischemic stroke is a major cause of mortality and disability worldwide, with approximately 7.4% to 7.7% recurrence within the first 3 months. This study aimed to identify potential biomarkers for predicting stroke recurrence.

Methods and results: We conducted a nested case-control study using a hospital-based cohort from the Third China National Stroke Registry selecting 214 age- and sex-matched patients with ischemic stroke with hypertension and no history of diabetes or heart disease. Using data-independent acquisition for discovery and multiple reaction monitoring for quantitative validation, we identified 26 differentially expressed proteins in large-artery atherosclerosis (Causative Classification of Ischemic Stroke …

Unraveling The Intraday Variations In The Tear Fluid Proteome, Garrett Jones, Jeremy Altman, Saleh Ahmed, Tae Jin Lee, Wenbo Zhi, Shruti Sharma, Ashok Sharma

Faculty, Staff and Student Publications

PURPOSE: Tear fluid is a complex and dynamic biological fluid that plays essential roles in maintaining ocular homeostasis and protecting against the external environment. Owing to the small sample volume, studying the tear proteome is challenging. However, advances in high-resolution mass spectrometry have expanded tear proteome profiling, revealing >500 unique proteins. Tears are emerging as a noninvasive source of biomarkers for both ocular and systemic diseases; nevertheless, intraday variability of proteins in tear fluid remains questionable. This study investigates intraday variations in the tear fluid proteome to identify stable proteins that could act as candidate biomarkers.

METHODS: Tear samples from …

Sex Differences In Revascularization, Treatment Goals, And Outcomes Of Patients With Chronic Coronary Disease: Insights From The Ischemia Trial, Harmony R Reynolds, Derek D Cyr, C Noel Bairey Merz, Leslee J Shaw, Bernard R Chaitman, William E Boden, Karen P Alexander, Yves D Rosenberg, Sripal Bangalore, Gregg W Stone, Claes Held, John Spertus, Kaatje Goetschalckx, Olga Bockeria, Jonathan D Newman, Jeffrey S Berger, Ahmed Elghamaz, Renato D Lopes, James K Min, Daniel S Berman, Michael H Picard, Raymond Y Kwong, Robert A Harrington, Boban Thomas, Sean M O'Brien, David J Maron, Judith S Hochman, Ischemia Research Group

Faculty, Staff and Student Publications

BACKGROUND: Women with chronic coronary disease are generally older than men and have more comorbidities but less atherosclerosis. We explored sex differences in revascularization, guideline-directed medical therapy, and outcomes among patients with chronic coronary disease with ischemia on stress testing, with and without invasive management.

METHODS AND RESULTS: The ISCHEMIA (International Study of Comparative Health Effectiveness with Medical and Invasive Approaches) trial randomized patients with moderate or severe ischemia to invasive management with angiography, revascularization, and guideline-directed medical therapy, or initial conservative management with guideline-directed medical therapy alone. We evaluated the primary outcome (cardiovascular death, myocardial infarction, or hospitalization for …

Performance Classification For Lasso Weights With Penalized Logistic Regression For High-Dimensional Data, Afiaa Raheem Khudhair, Saja Mohammad Hussein

Journal of Economics and Administrative Sciences

In high-dimensional data, classification performance is a crucial consideration. One method of interest is the penalized binary logistic regression. However, the Least Absolute Shrinkage and Selection Operator) The Lasso method may face problems when the appropriate penalty for each coefficient is not determined. For this reason, different weights are used in weighted Lasso estimates to address this issue and improve classification performance. To overcome this limitation, we employ various Weighted Lasso Estimates, each with unique weight assignments, and compare their performance with our fifth proposed weight configuration. This application of Lasso weighting schemes aims to uncover the most effective approach …

Eef1a2 Promotes Pten-Gsk3Β-Scf Complex-Dependent Degradation Of Aurora Kinase A And Is Inactivated In Breast Cancer, Warapen Treekitkarnmongkol, Luisa M Solis, Deivendran Sankaran, Mihai Gagea, Pankaj K Singh, Ragini Mistry, Tristian Nguyen, Kazuharu Kai, Jiajun Liu, Kaori Sasai, Yoshimi Jitsumori, Jianwen Liu, Norio Nagao, Fabio Stossi, Michael A Mancini, Ignacio I Wistuba, Alastair M Thompson, Jonathan M Lee, Juan Cadiñanos, Kwong-Kwok Wong, Catherine M Abbott, Aysegul A Sahin, Suyu Liu, Hiroshi Katayama, Subrata Sen

Faculty, Staff and Student Publications

The translation elongation factor eEF1A promotes protein synthesis. Its methylation by METTL13 increases its activity, supporting tumor growth. However, in some cancers, a high abundance of eEF1A isoforms is associated with a good prognosis. Here, we found that eEF1A2 exhibited oncogenic or tumor-suppressor functions depending on its interaction with METTL13 or the phosphatase PTEN, respectively. METTL13 and PTEN competed for interaction with eEF1A2 in the same structural domain. PTEN-bound eEF1A2 promoted the ubiquitination and degradation of the mitosis-promoting Aurora kinase A in the S and G2 phases of the cell cycle. eEF1A2 bridged the interactions between the SKP1-CUL1-FBXW7 (SCF) ubiquitin …

High Clinical Exome Sequencing Diagnostic Rates And Novel Phenotypic Expansions For Nonisolated Microphthalmia, Anophthalmia, And Coloboma, Bhavana Kunisetty, Bailey A Martin-Giacalone, Xiaonan Zhao, Pamela N Luna, Brian P Brooks, Robert B Hufnagel, Chad A Shaw, Jill A Rosenfeld, A J Agopian, Philip J Lupo, Daryl A Scott

Faculty, Staff and Student Publications

PURPOSE: A molecular diagnosis is only made in a subset of individuals with nonisolated microphthalmia, anophthalmia, and coloboma (MAC). This may be due to underutilization of clinical (whole) exome sequencing (cES) and an incomplete understanding of the genes that cause MAC. The purpose of this study is to determine the efficacy of cES in cases of nonisolated MAC and to identify new MAC phenotypic expansions.

METHODS: We determined the efficacy of cES in 189 individuals with nonisolated MAC. We then used cES data, a validated machine learning algorithm, and previously published expression data, case reports, and animal models to determine …

Hippo Cooperates With P53 To Maintain Foregut Homeostasis And Suppress The Malignant Transformation Of Foregut Basal Progenitor Cells, Yu Jiang, Haidi Huang, Jiangying Liu, Dan Luo, Rongzi Mu, Jianghong Yuan, Jihong Lin, Qiyue Chen, Wufan Tao, Ling Yang, Man Zhang, Pingping Zhang, Fengqin Fang, Jianming Xu, Qingqiu Gong, Zhiping Xie, Yongchun Zhang

Faculty, Staff and Students Publications

Basal progenitor cells serve as a stem cell pool to maintain the homeostasis of the epithelium of the foregut, including the esophagus and the forestomach. Aberrant genetic regulation in these cells can lead to carcinogenesis, such as squamous cell carcinoma (SCC). However, the underlying molecular mechanisms regulating the function of basal progenitor cells remain largely unknown. Here, we use mouse models to reveal that Hippo signaling is required for maintaining the homeostasis of the foregut epithelium and cooperates with p53 to repress the initiation of foregut SCC. Deletion of

Kidney Function Trajectories And Right Heart Failure Following Lvad Implantation, Carl P Walther, Andrew B Civitello, Harveen K Lamba, Nandan K Mondal, Sankar D Navaneethan

Faculty, Staff and Students Publications

BACKGROUND: Preoperative kidney dysfunction is a risk factor for right heart failure (RHF) after implantation of a left ventricular assist device (LVAD). However, characteristic kidney function trajectories before and after post-LVAD RHF are uncertain, so we investigated this.

METHODS AND RESULTS: We identified individuals who received primary continuous-flow LVAD implantation from July 1, 2014 to December 31, 2017 in the Interagency Registry for Mechanically Assisted Circulatory Support (INTERMACS) data set. Incident RHF was ascertained using the INTERMACS definition at 1 and 3 months and classified as transient or persistent. Kidney function trajectories before and after RHF onset, and relationships of …

Proteomic Associations Of Adverse Outcomes In Human Heart Failure, Marie-Joe Dib, Ahmed Diab, Ali Javaheri, Douglas L Mann, Et Al.

2020-Current year OA Pubs

BACKGROUND: Identifying novel molecular drivers of disease progression in heart failure (HF) is a high-priority goal that may provide new therapeutic targets to improve patient outcomes. The authors investigated the relationship between plasma proteins and adverse outcomes in HF and their putative causal role using Mendelian randomization.

METHODS AND RESULTS: The authors measured 4776 plasma proteins among 1964 participants with HF with a reduced left ventricular ejection fraction enrolled in PHFS (Penn Heart Failure Study). Assessed were the observational relationship between plasma proteins and (1) all-cause death or (2) death or HF-related hospital admission (DHFA). The authors replicated nominally significant …

Dual Membrane-Spanning Anti-Sigma Factors Regulate Vesiculation In Bacteroides Thetaiotaomicron, Evan J Pardue, Mariana G Sartorio, Biswanath Jana, Nichollas E Scott, Wandy L Beatty, Juan C Ortiz-Marquez, Tim Van Opijnen, Fong-Fu Hsu, Robert F Potter, Mario F Feldman

2020-Current year OA Pubs

Bacteroidota are abundant members of the human gut microbiota that shape the enteric landscape by modulating host immunity and degrading dietary- and host-derived glycans. These processes are mediated in part by

Program Review Report 3-5-24, Angela Brock

Program Review Committee

No abstract provided.

Insisting On Success As Resistance: Building An Ecosystem Of Black Joy, Laughter And Affirmation, Whitney Hanley, Breanya Hogue

Black Educology Mixtape "Journal"

School climate is a complex system involving norms, goals, values, relationships, practices and organizational structures. It includes the composition of the school and school practices. School composition encompasses the social and economic characteristics of a school, whereas school practice includes administrative leadership and the utilization of resources (Anyon et al., 2016; Opdenakker & Van Damme, 2006; Rumberger & Palardy, 2005; Thapa et al., 2013). If students do not feel their needs are being met by their school environment their emotional, psychological and academic needs are at risk (Cohen et al., 2009; Connell & Welborn, 1991; Libbey, 2004). Black students in …

Quebec's Weird Frontier: Monts Groulx, An Entire Earth, Will Kemeza

Appalachia

No abstract provided.

News And Notes

Appalachia

No abstract provided.

Detecting The Diatom Hab Genus Pseudo-Nitzschia In The Public Shellfish Harvesting Area Of Huntington Beach State Park Using A Nanopore Sequencing Approach, Megan Cevasco, Aramis Lawson, Zachary Padgett, Elena Renshaw

Journal of South Carolina Water Resources

Harmful algal blooms (HABs) cause detrimental economic, ecological, and human health impacts. A major group of HAB taxa of particular interest in coastal shellfish harvesting grounds consists of domoic-acid producing species within the cosmopolitan marine diatom genus Pseudo-nitzschia. Domoic acid (DA) is a neurotoxic amino acid that bioaccumulates in the tissue of filter-feeding shellfish and is responsible for amnesiac shellfish poisoning (ASP) in humans and other marine life. To minimize human health risks and economically damaging shellfish harvesting closures, there is a need to develop proactive monitoring efforts that focus on determining the environmental conditions likely to support Pseudo-nitzschia HABs. …

Spatial And Temporal Variability In Water Quality And Phytoplankton Community Composition In Charleston Harbor, Abigail Stephens, Nicole Schanke, Emmaline Sheahan, Giacomo Ditullio

Journal of South Carolina Water Resources

The Charleston Harbor estuary is a dynamic ecosystem draining three rivers that surround the rapidly urbanizing greater Charleston area. Projected climate change impacts include elevated sea surface temperature and local changes in water quality that will likely alter biogeochemical cycling as well as phytoplankton abundance and community composition. Partnering with the local non-profit organization Charleston Waterkeeper, surface water samples were collected from late April through October 2021 at 20 sites in the Charleston Harbor estuary system. Water quality parameters measured included sea surface temperature (SST), salinity, pH, dissolved inorganic carbon, chromophoric dissolved organic matter (CDOM), phytoplankton pigments and nitrate and …

Use Of An Autonomous Surface Vehicle To Collect High Spatial Resolution Water Quality Data At Lake Wateree, Sc, Archana Venkatachari, Annie Bourbonnais, Ibrahim Salman, Ioannis Rekleitis, Alberto Quattrini Li, Kathryn L. Cottingham, Holly A. Ewing, Denise Bruesewitz, Emily Arsenault, Quin Shingai

Journal of South Carolina Water Resources

Freshwater resources including lakes and reservoirs are increasingly threatened by harmful cyanobacterial blooms (HCBs). The scarcity of high spatial and temporal resolution data presents challenges for monitoring, predicting, and managing these blooms. Autonomous surface vehicles (ASVs) equipped with water quality sensors represent a powerful tool to obtain high-resolution spatial data at Lake Wateree (LW), South Carolina (SC). LW is a hydroelectric reservoir commonly covered with extensive blooms of the benthic cyanobacteria Microseira (Lyngbya) wollei and Phormium sp., with the thickest mats in shallow coves.

The main objective of this study was to determine the best speed and duration of loiter …

Impacts Of Harmful Algal Blooms (Habs) On Agriculture: A Short Communication, Debabrata Sahoo, Ibrahim Busari, Heather Nix, Sarah A. White

Journal of South Carolina Water Resources

agriculture, which requires clean water, healthy soil, and adequate nutrients, is crucial to meet the growing demand for food and fiber. Over application of nutrients to meet demand has degraded surface water quality, leading to accelerated eutrophication. Cultural eutrophication is a process by which aquatic ecosystems such as ponds, lakes, and estuaries become so enriched with nutrients—primarily nitrogen and phosphorus—as to become unusable for safe consumption and ecological purposes. Eutrophication has intensified due to climate change. Increased temperatures, intense storms, and drought can drive the formation of eutrophic and hypereutrophic conditions. Hypereutrophication results in the rapid proliferation of algae and …