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Changes In Avian Capture Rate And Migration Phenology Across 37 Years At A Coastal Barrier Island In Georgia, Ryan Davenport

Masters Theses and Doctoral Dissertations

Migration is one of the riskiest periods in a bird’s yearly cycle, and monitoring migratory trends helps us understand how birds are impacted by the changing world. Here, I present an analysis of 37 years of fall bird banding data collected at the Jekyll Island Banding Station in Georgia. Capture rates of Neotropical migrants on Jekyll have declined 50-90% in many common species, and the mean ordinal passage date of Gray Catbird and Western Palm Warbler have shifted 8 days later. Landcover analysis of the island yielded non-significant results; therefore, human-caused habitat change on breeding and wintering grounds are likely …

Personalized And Adaptive Therapeutic Music Generation From Biosignals Using Knowledge-Guided Multimodal Large Language Models, Amin Amiri

Masters Theses and Doctoral Dissertations

Multimodal generative models are reshaping digital therapeutics by enabling real-time synthesis of personalized content aligned with a user’s physiological and affective state. However, existing systems remain fragmented across modalities and often lack a unified framework that can jointly represent biosignals, natural language intent, music, and video under long-context constraints. This dissertation presents an end-to-end multimodal large language model ecosystem for personalized therapeutic music generation that combines discrete tokenization, evidence-grounded reasoning, and stabilized preference alignment. At the representation layer, the dissertation develops a family of tokenizers that convert continuous biomedical and media signals into compact discrete sequences for transformer-based modeling. Harmonizer …

Attention After Adversity: Examining Temperament As A Protective And Risk Factor, Claire N. Beach

Masters Theses and Doctoral Dissertations

Attentional control (AC) is an executive function referring to the ability to attend to pertinent information in the face of distractions. Adverse childhood experiences (ACEs) are characterized by various forms of abuse and neglect experienced before the age of 18. Temperament is an early-appearing variation in attention-related self-regulation that is thought to be largely influenced by genetics. This study assessed the effect of ACEs on attentional control, the role of temperament as a protective/risk factor, and individual differences through eyetracking. Results showed no direct relationship between ACEs and attentional control, however, ACEs were consistently associated with higher negative affect and …

Thermodynamic Evaluation Of Cobalt-Ferrite Based Redox Reactions For Solar Thermochemical Conversion Of Co2 Into Fuels, Tavine S. Legore-Lewis

Masters Theses and Doctoral Dissertations

The solar thermochemical conversion of carbon dioxide into synthetic fuels represents a promising pathway for mitigating anthropogenic CO₂ emissions while enabling the production of carbon neutral energy carriers. This study investigates the use of cobalt ferrite (CoFe₂O₄) as a redox-active metal oxide for two step solar thermochemical CO₂ splitting to produce carbon monoxide, a key component of syngas. Analysis showed that increasing εgg from 0.0 to 0.95, consistently strengthened heat recovery in the inert‑gas and oxygen cooling stages, which in turn sharply reduced the auxiliary heating loads for both Ar and CO₂. These reductions propagated through the system, lowering the …

A Two-Stage Screening Approach Integrated With Gwas For Rare Phenotypes Such As Spontaneous Haploid Genome Doubling In Maize, Mercy Fakude, Tyler L. Foster, Yu Ru Chen, Ann Murithi, Siddique Imran Aboobucker, Ursula Karoline Frei, Philip M. Dixon, Thomas Lübberstedt

Plant and Soil Sciences Faculty Publications

Spontaneous haploid genome doubling (SHGD) is a valuable trait in maize breeding, enabling the development of doubled haploid (DH) lines without chemical chromosome doubling. However, SHGD is a rare phenotype, expressed in only a small fraction of maize germplasm, making its identification resource-intensive. This study evaluated the efficiency of a two-stage field screening approach designed to identify maize genotypes with high haploid male fertility (HMF), a key indicator of SHGD potential. Simulation analyses showed that evaluating 50 haploid plants per genotype, combined with a 25% HMF threshold, provides an optimal balance between detection accuracy and resource efficiency. Across three growing …

Population Genomics Of A Cosmopolitan Weed Provides Insights Into Its Local Adaptation And Recent Demographic History, Marilia Souza Lucas, Christoph Rosche, Isabell Hensen, Stefan G. Michalski, Dávid U. Nagy, Diana Gamba, Renske E. Onstein, Karime Abidkulova, Mohammad Al-Gharaibeh, Ali A. Al-Namazi, Sirwan Babaei, Fernando Bastida, Caio Brunharo, Aurélien Caillon, Ragan M. Callaway, Sam St Clair, Darron A. Cullen, Ryan Donnelly, Alyson Ennis, David J. Ensing, Özkan Eren, Andrey Erst, Rita Filep, Luke Flory, Lauren J. Frazee, Yusufjon Gafforov, Fidji Gendron, Zigmantas Gudžinskas, Christopher Matt Guilliams, Avni Hajdari, Jian Hua Hao, Erin Haramoto

Plant and Soil Sciences Faculty Publications

Invasive plant species present a growing ecological and economic challenge, and often adapt rapidly to their novel environments through complex demographic and evolutionary processes. Invasion genomics offers powerful tools to disentangle these processes, but most studies rely on geographically narrow sampling across native and non-native ranges. Erigeron canadensis is a cosmopolitan weed native to North America that has successfully invaded diverse climates worldwide. We used double-digest restriction site-associated DNA sequencing (ddRADseq) to investigate the genetic diversity and structure of 280 E. canadensis populations across the Northern Hemisphere. We found that native and non-native populations maintained comparable genetic diversity. Population structure …

Triacontanol Boosts Soybean Nodulation Via Gmhsp26-Mediated Antioxidant Enhancement, Bingjie Niu, Minglei Cheng, Xudong Lu, Lili Sun, Shuang Lu, Jinke Guo, Hongyan Zhu, Lixiang Wang

Plant and Soil Sciences Faculty Publications

Soybean (Glycine max (L.) Merr.) is a globally crucial food crop and a model plant for studying symbiotic nitrogen fixation in legumes. Triacontanol (TRIA) is a natural plant growth regulator that enhances photosynthetic efficiency, stress tolerance, antioxidant enzyme activities and yield in crops. However, its regulatory role in nodulation and nitrogen fixation in legumes remains unclear. In this study, soybean seedlings inoculated with Bradyrhizobium japonicum strain USDA110 were treated with different concentrations of TRIA (0, 0.33, 0.5, 1 and 2 μg/mL). Then, oxidative stress indicators and comparative transcriptomic analysis were performed to check the oxidative status and screen the candidate …

2026 Commencement Program, Columbia College Chicago

Commencement Programs

The commencement program of the 2026 Columbia College Chicago graduation ceremonies.

Examining Pathogenic Vibrio Abundance And Environmental Controls Across Macroalgae, Sediment, And Oysters, Alexandra H. Geisser, Abigail K. Scro, Roxanna Smolowitz, Robinson W. Fulweiler

Arts & Sciences Faculty Publications

Climate change is accelerating the geographic spread and abundance of pathogenic Vibrio species in coastal waters, posing growing threats to ecosystems and human health. We investigated the abundance and pathogenic gene presence of V. vulnificus and V. parahaemolyticus across three common estuarine substrates (macroalgae, sediment, and oysters) in a temperate estuary. Macroalgae consistently harbored the highest Vibrio counts in conjunction with elevated pathogenic gene frequencies, while oysters contained the lowest. Environmental conditions related to Vibrio abundance were substrate and Vibrio species specific. Temperature and salinity were most closely related to pathogenic Vibrio abundance in oysters. In contrast, pathogenic Vibrio abundance …

Biohybrid Robotic Jellyfish For Swimming-Enhanced Vertical Ocean Profiling, Kelsi M. Rutledge, Sean Colin, John H. Costello, Noa Yoder, Simon R. Anuszczyk, Kelly R. Sutherland, Brad L. Gemmell, John O. Dabiri

Arts & Sciences Faculty Publications

Ocean monitoring is essential for understanding climate change and marine ecosystem dynamics, yet achieving comprehensive global coverage remains a challenge in oceanography. Current technologies face limitations in cost, power, hardware, and depth capacity that restrict widespread monitoring capabilities. Here we show that biohybrid robotic jellyfish (Aurelia aurita) can serve as autonomous vertical ocean profilers by integrating microcontrollers with positively buoyant sensor payloads, achieving controlled vertical-profiling capabilities. Laboratory experiments demonstrated repeatable up–down trajectories, quantified force balance limits, and identified predictable, size-dependent descent swimming speeds. Field deployments in Massachusetts coastal waters and the open ocean off the Florida Keys demonstrated field operation …

Optimizing Citriculture In South Texas With Endemic Hlb, Ruth Lilia Galan

Theses and Dissertations

The Texas citrus industry has a long history of resilience, rebounding from environmental and economic disasters. Over the last decade it has endured several hurricanes, freezes, pests and diseases. Huanglongbing (HLB), a graft-transmissible disease caused by Gram-negative bacterium Candidatus Liberibacter asiaticus which is vectored by the Asian citrus psyllid (ACP) (Diaphorina citri Kuwayama), is an endemic citrus disease posing serious threat to the long-term viability of the industry. Rapid production of high quality nursery trees and effective protection of young citrus transplants from HLB are critical for long term sustainability of citriculture in this region. Studies were performed to improve …

Phenotypic Contribution And Regulation Of Vibrio Parahaemolyticus Cold-Shock Protein Homologue Vp1889, Oleg Borisovich Ermolinsky

Theses and Dissertations

Vibrio parahaemolyticus is the primary causative agent of a form of gastroenteritis called vibriosis commonly acquired from ingestion of raw and undercooked seafood. The primary mitigation of seafood-borne illnesses is immediate storage on ice following catch, which inhibits bacterial metabolism and replication. Mesophilic bacteria such as V. parahaemolyticus induce expression of cold-shock proteins in a process named the cold shock response, which facilitates survival at low temperatures. V. parahaemolyticus bears 3 homologues of the major Escherichia coli cold-shock protein CspA, an RNA chaperone. Induction of E. coli CspA at low temperatures depends on autogenous modulation by its mRNA structure, which …

Combinatorial Statistics Witnessing An Infinite Family Of Congruences For A Sum Of Partition Functions, Jena M. Gregory

Theses and Dissertations

In 2007, Kronholm established The Interval Theorem, infinite families of congruences in arithmetic progression, modulo any prime ��, for ��(��, ��), the function enumerating the partitions of �� into parts whose sizes come from the set {1, 2, … , ��}. In 2022, Eichhorn, Kronholm, and Larsen proved there are combinatorial statistics described in terms of the multiplicities of the part sizes that witness Kronholm’s Interval Theorem. Here, “witness" means given a congruence of the form ��(��, ��) ≡ 0 (mod ��), we can use these statistics to classify the set of partitions of �� into �� equally sized subsets …

Developing Ai Literacy In Preservice Stem Teachers: Exploring The Role Of Pedagogically Grounded Engagement With Generative Ai In Lesson Planning, Omar Raul Elizondo

Theses and Dissertations

The rapid advancement of generative artificial intelligence (GenAI) is introducing new opportunities and challenges in education. This qualitative multiple-case study explored how preservice STEM teachers developed AI literacy through structured engagement with GenAI during inquiry-based lesson planning. Grounded in Ng et al.’s (2021) four-domain AI literacy framework, the 5E instructional model, and the Theory of Planned Behavior (TPB), the study examined how preservice teachers conceptualized, applied, evaluated, and ethically reasoned about GenAI-supported outputs while designing lessons aligned with the Texas Essential Knowledge and Skills (TEKS).

Participants were three preservice STEM teachers enrolled in the University of Texas Rio Grande Valley’s …

General Chemistry Students' Perceptions Of How Various Course Resources Affect Their Learning And Exam Preparation, Jennifer Scoggin Cortez

Theses and Dissertations

The tertiary-level first-semester general chemistry course has a large range of material with different complexities that can be difficult for students to master within one semester. In the general chemistry I course under study here, students were provided with a variety of resources to help with their learning and understanding, with various components of the course, including the lecture, online textbook, Peer-Led-Team-Learning (PLTL) study sessions, and exams, having associated resources. This study aims to analyze students’ experiences with these various resources. Students were given semi-structured interviews where they talked about their experiences with the resources and provided insight into more …

Chatbots In The Classroom: Understanding The Impact Of Chatbot Integration In Writer’S Workshops On High School Students’ Writing, Gabriel Cerda

Theses and Dissertations

Writing is a complex developmental skill, and much research has been conducted to understand in which ways to best close the gaps that national data indicates exist for students in K-12 education. This quasi-experimental study explored how integrating chatbots as dialogue agents within a writer’s workshop framework influences the quality of written compositions among Grade 12 students. The research was grounded in the Direct and Indirect Effect Model of Writing (DIEW) and the Writer(s)-Within-Community (WWC) model, which emphasize both the cognitive and social-emotional dimensions of the writing process.

Participants received real-time, individualized feedback, with pre- and post-test essays evaluated using …

Assessing Water Quality And Nitrogen Dynamics In Bahia Grande, Texas Using Field And Remote Sensing Data, Sk Taufiqul Islam

Theses and Dissertations

An 8,220-acre estuary in South Texas, Bahia Grande has recently been restored from a disconnected hypersaline basin to a tidal estuary. A spatially explicit water quality index (WQI) was developed and in situ physicochemical data coupled with remote sensing data from Sentinel-2 were used to determine ecological integrity. A WQI from 29.45-53.20 yielded a spatial distribution of water quality that displayed a non-linear spatial trend throughout the estuary. Water quality close to the Brownsville Ship Channel inlet yielded values of 'Moderate/Stressed' water quality (> 50). These areas represent local zones of disturbance where ammonium concentrations were more than 11 µmol/L. …

The Effect Of Drought On Avian Migratory Patterns And Stopover Through Texas And Louisiana, Ian Becker

Theses and Dissertations

Extreme weather events pose a massive threat for native ecosystems. As precipitation and temperature patterns are altered due to climate change, drought may become an incredibly severe event on the landscape. Drought directly impacts resources that migratory birds need during stopover en route to breeding and non-breeding grounds. Here, I quantify the impacts of drought on migration through Texas and Louisiana using 26 years of weather surveillance radar data. To understand how drought interacts with the local environment to impact migration, I tested 4 hypotheses displaying drought’s ability to impact migrants in conjunction with climatic and habitat level characteristics. Fall …

Ethanol State-Dependent Learning In The Honey Bee (Apis Mellifera), Ethan Neil Govea

Theses and Dissertations

Ethanol disrupts neural circuits involved in addiction and withdrawal, yet the molecular mechanisms underlying these effects remain poorly understood. One possibility is that ethanol alters an animal’s perceptual or internal state, causing a stimulus learned while intoxicated to be processed differently when the animal is sober. This study examined how ethanol exposure affects odor learning, recall, and discrimination in honey bees, a useful model because of their robust olfactory learning and experimentally accessible neural systems. Bees were differentially conditioned with appetitive reward (sucrose) during hexanol exposure and aversive stimulus (quinine) during decanol exposure. To assess olfactory processing and state dependency, …

Developing A Qpcr Method For Evaluating Parasitoid Wasps As A Potential Means Of Control Of The Southern Cattle Fever Tick Rhipicephalus (Boophilus) Microplus In South Texas, Abbey Abalos

Theses and Dissertations

Ixodiphagus spp. wasps are natural enemies of ticks that have been reported to cause mortality in multiple tick species. Parasitoid wasps may represent a potential biocontrol alternative to traditional chemical tick control methods, which are challenged by non-target toxicity and the development of pesticide resistance in species of concern such as Rhipicephalus microplus, a pest of livestock that causes billions of dollars in loss to the livestock industry worldwide. Rhipicephalus sanguineus s.l. is a congeneric species of R. microplus, and parasitism of R. sanguineus by Ixodiphagus sp. in areas of co-occurrence has been observed. It is unknown if R. microplus …

Academic Anxiety, Anxiety Sensitivity, And General Mental Health In Collegiate Student-Athletes, Finley Gabrielle Elkins Sims

Theses and Dissertations

Collegiate athletes’ mental health is on the decline, and they have unique experiences that can influence the prevalence of mental health struggles. This study examined academic anxiety, comorbid forms of anxiety, and predicting factors in 187 collegiate student-athletes across 29 U.S. colleges. Athletes had significantly higher levels of academic anxiety and general anxiety compared to a college nonathlete population. There were significant gender differences in athletes, with females having greater levels of anxiety sensitivity, academic anxiety, sport anxiety, general anxiety, depression, and a history of depression than male athletes. Gender, history of depression, anxiety sensitivity, and depression were significant predictors …

A Visit-Count-Based Complete Foraging Strategy For Robot Swarms, Arturo Yahir Gonzalez

Theses and Dissertations

Swarm robotics systems often rely on a balance between exploration and exploitation to perform tasks like Central Place Foraging. While exploitation methods such as pheromone trails and site fidelity are well-studied, the efficiency of the underlying random search exploration remains a challenge, frequently leading to redundant coverage and wasted time as multiple agents repeatedly search the same fruitless areas. This thesis introduces a memory-enhanced exploration strategy designed to improve the efficiency of random search in a swarm of simple robots.

In our proposed algorithm, each robot, constrained with limited memory, periodically logs its recent locations while exploring. This spatial data …

The Impact Of Nutrition On Insecticide Resistance And Gene Expression In Aedes Aegypti, Esmeralda Guadalupe Rosas

Theses and Dissertations

The development of insecticide resistance in Aedes aegypti, a major vector of dengue and Zika viruses, threatens vector control efforts, particularly in endemic regions such as South Texas. Insecticides remain widely used; however, their overuse has accelerated metabolic resistance mediated by cytochrome P450 enzymes. Environmental factors such as larval nutrition may influence mosquito physiology and resistance-associated gene expression, yet this relationship remains poorly understood. This study examines how larval nutritional conditions affect the expression of cytochrome P450 genes linked to pyrethroid resistance in Aedes aegypti. Larvae were reared under five dietary treatments differing in lipid and protein ratios, and adults …

Probing The Dynamic Behavior Of The Androgen Receptor In The Presence Of Heptyl And Methyl Parabens, Edgardo De Leon

Theses and Dissertations

The androgen receptor (AR) mediates physiological signaling from endogenous androgens, a function that can be disrupted by endocrine disruptors with serious reproductive and developmental consequences. Parabens, widely used preservatives, inhibit AR signaling in cell-based assays, with inhibitory potency correlating with alkyl chain length: heptylparaben exhibits stronger antagonism than methylparaben, which shows no effect. We hypothesize this differential potency arises from allosteric modulation at the AR Binding Function 3 (BF-3) site, altering dihydrotestosterone (DHT) binding dynamics. Docking calculations using antagonist-bound AR crystal structures, followed by molecular dynamics simulations, show that methylparaben fails to remain bound at BF-3, whereas heptylparaben maintains stable …

Investigating The Ability Of Foxo1 To Maintain Stem Cells, Stella Aime Rios

Theses and Dissertations

Forkhead box O (Foxo) transcription factors are key regulators of stem cell identity and tumor aggressiveness. Prior work from our group and others demonstrates that Foxo factors maintain stem-like states across diverse biological systems; however, the mechanisms by which Foxo1 suppresses differentiation remain poorly defined.

Using C2C12 myoblasts as a model, we investigated whether Foxo1 preserves stem-like programs through regulation of the nuclear pore protein Nup210. RNA interference was used to generate Foxo1 knockdown cells, followed by qRT-PCR, RNA-sequencing, and fluorescence microscopy. Transcriptomic analysis revealed widespread gene expression changes involving metabolic, mitochondrial, and transcriptional pathways. Notably, Nup210 expression was significantly …

Morphological Evolution And Sediment Budget Of A Flood-Tidal Delta On The Rio Grande Delta Plain: Bahia Grande, Texas, Usa, Aleen Pertuz Paz

Theses and Dissertations

The Isabel Delta is a recently formed flood-tidal delta within the restored Bahia Grande system on the Rio Grande Delta Plain, Texas, USA, where renewed tidal connectivity has created conditions for rapid sediment buildup and landform evolution. This study quantified morphological changes from 2008 to 2025 using satellite imagery. It assessed sediment retention by comparing the effective sediment discharge required to reproduce observed delta growth with field-based estimates of sediment supply derived from channel hydrodynamics, cross-sectional area, and suspended sediment concentration. The delta expanded steadily throughout the study period, with increases in bar, channel, and total surface area, and an …

Identification Of Peptides For A Muc13 Cancer Vaccine, Abigail Olivia Gomez

Theses and Dissertations

Mucin 13 (MUC13) is a transmembrane glycoprotein that is frequently overexpressed in epithelial cancers. Its extracellular domains and cytoplasmic signaling potential contribute to disrupted cell adhesion, increased invasion, and cancer-promoting pathways, making MUC13 a promising target for immunotherapy. This project used an in-silico approach to identify MUC13-derived peptides predicted to bind HLA class I molecules and support CD8+ T cell-mediated immune responses. Bioinformatics tools were used to screen candidate epitopes for HLA binding affinity, antigenicity, toxicity, IFN-γ-inducing potential, and population coverage, allowing rational prioritization of peptide candidates for experimentation. Selected peptides were evaluated in THP-1-derived macrophages using RT-PCR, Western blotting, …

La Panza: Un Acto De Rebeldia Para Los Atravesados Y Los Que Siguen Despues / The Panza: An Act Of Rebellion For The Inbetweeners And Those Who Follow After, Abigail Guadalupe Cantu

Theses and Dissertations

Our ancestors, family members, and ourselves that live in the borderlands have embodied knowledge, and/or an innate intuition that comes from the pit of our soul, particularly from our “panza”; hence, the creation of a panza consciousness as the focus for my thesis. I’m trying to “rediscover” the embodied knowledge that has been taken from us and how we can learn to harness these forms of knowledge into a societal shift ( i.e. how we interact with others, how we see our bodies, how see the creation of knowledge, and how we see the world). Although, Eurocentric ideals sought to …

Soil Water Content Beneath Agrivoltaic Installations In A Subtropical Semi-Arid Climate, John Justin Rodriguez

Theses and Dissertations

Agrivoltaics (AV) not only beneficially influences agricultural microclimates in the field, AV systems can generate on-site energy to offset operational costs, diversify income sources, and improve overall resilience, while providing environmental co-benefits such as reduced heat stress on plants and improved resource use efficiency. This thesis evaluated agrivoltaic shading effects on SWC and soil temperature using high-resolution in situ measurements collected over one year in an active vineyard, incorporating row type, soil depth, shading, and time of day. With precipitation as the primary water source, shaded soils exhibited up to 24.53% lower SWC relative to sun-exposed soils, likely due to …

Linking North American Demographic Trends To Mexican Non-Breeding Grounds In A Migratory Warbler, Majuwana Gamage Dulanthi Dileka Kariyawasam

Theses and Dissertations

Migration enables species to exploit seasonal resources despite high energetic costs and mortality risks, making it a key focus for conservation under environmental change. I investigated migratory connectivity in Orange-crowned Warblers using stable hydrogen isotopes (δ²H) from feathers collected at nine non-breeding sites across Mexico. Results indicated generally weak connectivity (MC = 0.18), with most sites hosting individuals from six breeding clusters across Canada and the United States. However, one northwestern breeding group showed strong connectivity, suggesting crosswise migration to eastern Mexico. By integrating these findings with long-term Breeding Bird Survey data, I detected contrasting population trends, with Pacific Coast …