Digital Commons Network^™

Prioritization Of Kidney Cell Types Highlights Myofibroblast Cells In Regulating Human Blood Pressure, Mahboube Ganji-Arjenaki, Zoha Kamali, International Consortium Of Blood Pressure; Soroush Sardari, Soroush Sardari, Martin De Borst, Harold Snieder, Ahmad Vaez

Faculty, Staff and Student Publications

INTRODUCTION: Blood pressure (BP) is a highly heritable trait with over 2000 underlying genomic loci identified to date. Although the kidney plays a key role, little is known about specific cell types involved in the genetic regulation of BP.

METHODS: Here, we applied stratified linkage disequilibrium score (LDSC) regression to connect BP genome-wide association studies (GWAS) results to specific cell types of the mature human kidney. We used the largest single-stage BP genome-wide analysis to date, including up to 1,028,980 adults of European ancestry, and single-cell transcriptomic data from 14 mature human kidneys, with mean age of 41 years.

RESULTS: …

An Index Of Biotic Integrity For Macroinvertebrate Stream Bioassessment Conducted By Community Scientists, Patrick M. Edwards, Daniel Bedell, Shannon Hubler, Chad A. Larson, Kate H. Macneale, Elisa Mickelson, Chris Prescott, Elinore Webb, Jo Wilhelm

Environmental Science and Management Faculty Publications and Presentations

Community science bioassessment has great potential to inform comprehensive stream management plans, but regional analytical tools are needed to evaluate macroinvertebrate data collected through community science programs. To this end, we modified a pre-existing professional index of biotic integrity (IBI) to create a community science IBI (CS-IBI), designed for stream macroinvertebrate data collected by community scientists with minimal training. We used data collected by both professional and community scientists to develop, calibrate, and validate the CS-IBI at 76 streamsites in the Puget Lowland andWillamette Valley ecoregions of the PacificNorthwest in theUnited States. Community science data were taxonomically coarser andmore variable …

Multidisciplinary Training In Dermatology: Exploring The Spectrum Of Board Certifications Among Physicians Practicing Dermatology In Texas, Rebecca H Lee, Jason Lee, Jonny Hatch, Lilian Zhan, Braden Van Alfen, Mark Conley, Tracy Zhao, Carlos Gomez-Meade

Faculty, Staff and Students Publications

Dermatology, a medical specialty focused on skin, hair, and nail conditions, often overlaps with various medical specialties. Although most physicians practicing dermatology are board-certified in dermatology, there are physicians practicing dermatology who are board-certified in a variety of different medical specialties. This cross-sectional study examines the board certifications of physicians who reported practicing dermatology in Texas. Data were sourced from the Texas Medical Board database updated in August 2023. The data showed that out of 1,614 practicing physicians declaring dermatology as a specialty in Texas, 1,080 (66.91%) physicians had one board certification, 200 (12.39%) had two, and 15 (0.93%) had …

Case Study - A Comparative Analysis Of Two Different Wastewater Treatment Plants, James Duckett

Construction Management

This case study compares two different wastewater treatment plants and analyzes the different characteristics, including strengths and weaknesses of both. The first plant being addressed is the Stockton Regional Wastewater Controls Facility (RWCF), and the second plant studied is the Morro Bay Water Reclamation Facility. These facilities are both quite new at the time of this paper, though they are both very different in size and geographical location, as one is on top of a hill, and one is in the middle of a valley. The Stockton RWCF is currently under construction, nearing completion at the time of this paper, …

Bacillary Angiomatosis In A Patient With Hiv And Disseminated Mycobacterium Avium Complex Infection, Ibeth P Caceres, Angelique Ruml, Rubi Montejano, Omid Jalali, Theodore Rosen

Faculty, Staff and Students Publications

Bartonella is a genus of arthropod-borne bacterial pathogens that typically cause persistent infections of erythrocytes and endothelial cells in mammalian hosts. The species that primarily infect humans are Bartonella henselae and Bartonella quintana. Depending on immune status, the clinical presentation of B. henselae may differ, manifesting as cat-scratch disease in immunocompetent individuals or bacillary angiomatosis (BA) and peliosis in immunocompromised patients. The cutaneous manifestations of BA are typically characterized by occasionally painful, angiomatous papules and nodules, often with a chronic, persistent course. Herein, we present a case of biopsy-confirmed B. henselae infection in a 32-year-old HIV-positive female with acquired immunodeficiency …

Autologous Her2-Specific Car T Cells After Lymphodepletion For Advanced Sarcoma: A Phase 1 Trial, Meenakshi Hegde, Shoba Navai, Christopher Derenzo, Sujith K Joseph, Khaled Sanber, Mengfen Wu, Ahmed Z Gad, Katherine A Janeway, Matthew Campbell, Dolores Mullikin, Zeid Nawas, Catherine Robertson, Pretty R Mathew, Huimin Zhang, Birju Mehta, Raksha R Bhat, Angela Major, Ankita Shree, Claudia Gerken, Mamta Kalra, Rikhia Chakraborty, Sachin G Thakkar, Olga Dakhova, Vita S Salsman, Bambi Grilley, Natalia Lapteva, Adrian Gee, Gianpietro Dotti, Riyue Bao, Ahmed Hamed Salem, Tao Wang, Malcolm K Brenner, Helen E Heslop, Winfried S Wels, M John Hicks, Stephen Gottschalk, Nabil Ahmed

Faculty, Staff and Students Publications

In this prospective, interventional phase I study (NCT00902044) for patients with advanced sarcoma, we infused autologous HER2-specific chimeric antigen receptor T-cells (HER2-CART) after lymphodepletion with cyclophosphamide (Cy) +/− fludarabine (Flu): 1×108 T-cells/m2 after Flu (cohort A) or Flu/Cy (cohort B), and 1×108 CAR-positive T-cells/m2 after Flu/Cy (cohort C). The primary outcome was assessment of safety of one dose of HER2-CART after lymphodepletion. The determination of antitumor responses was the secondary outcome. Thirteen patients were treated in 14 enrollments with 7 receiving multiple infusions. HER2-CART expanded after 19 of 21 infusions. Nine of 12 patients in cohorts A and …

Unswitched Memory B Cell Deficiency In Children With Sickle Cell Disease And Response To Pneumococcal Polysaccharide Vaccine, Venée N Tubman, Daniel Maysonet, Norma Estrada, Tripti Halder, Lindsey Ramos, Sameera Bhamidipati, Alexandre F Carisey, Charles G Minard, Carl E Allen

Faculty, Staff and Students Publications

Early mortality in sickle cell disease (SCD) is attributed to increased infections due to loss of splenic function. Marginal zone B cells are important for initial opsonization of pathogens and can be absent in spleen histopathology in SCD. The frequency of unswitched memory B cells (UMBC), the circulating correlate of marginal zone B cells, reflects the immunologic function of the spleen. We hypothesized that asplenia in SCD is associated with alterations in the peripheral blood lymphocyte population and explored whether UMBC deficiency was associated with a clinical phenotype. We analyzed B cell subsets and clinical history for 238 children with …

Hyperkinetic Movement Disorder Caused By The Recurrent C892c>T Nacc1 Variant, Jonna Komulainen-Ebrahim, Salla M Kangas, Estrella López-Martín, Timothy Feyma, Fernando Scaglia, Beatriz Martínez-Delgado, Outi Kuismin, Maria Suo-Palosaari, Lucinda Carr, Reetta Hinttala, Manju A Kurian, Johanna Uusimaa

Faculty, Staff and Students Publications

BACKGROUND: Genetic syndromes of hyperkinetic movement disorders associated with epileptic encephalopathy and intellectual disability are becoming increasingly recognized. Recently, a de novo heterozygous NACC1 (nucleus accumbens-associated 1) missense variant was described in a patient cohort including one patient with a combined mitochondrial oxidative phosphorylation (OXPHOS) deficiency.

OBJECTIVES: The objective is to characterize the movement disorder in affected patients with the recurrent c.892C>T NACC1 variant and study the NACC1 protein and mitochondrial function at the cellular level.

METHODS: The movement disorder was analyzed on four patients with the NACC1 c.892C>T (p.Arg298Trp) variant. Studies on NACC1 protein and mitochondrial function …

Advances In Bone And Orthopedics 2024 Edition, Jean-Philippe Berteau, Laurent Pujo-Menjouet

Publications and Research

We are delighted to present the latest edition of ”Advances in Bone and Orthopedics,” a comprehensive compilation of pioneering research and innovative developments in the field. This volume brings together a selection of peer-reviewed abstracts from BONITOS 2024, the Fourth Season of the Bone and Orthopedics Interdisciplinary Symposium, held on May 31st, 2024, at the College of Staten Island in New York. This symposium, a hallmark event in the calendar of professionals dedicated to bone health and orthopedic excellence. The contributions within this volume reflect the breadth and depth of research presented at BONITOS 2024. These abstracts represent cutting-edge studies …

Functional Characterization Of Potato Arp1 Gene Encoding Auxin-Repressed Protein, Sara Ali Alneyadi

Theses

Auxin-repressed proteins (ARPs) are conserved in higher plants and are involved in plant growth and development by controlling gene expression. ARP1 has been studied for its role in biotic stress response, but its role in abiotic stress response remains unclear. In this study, transgenic Arabidopsis plants expressing potato (S. tuberosum) ARP1 were evaluated for their salinity stress response. By gradually increasing NaCl concentrations from 0 to 200mM, plants were subjected to high salinity stress. As compared to wild-type (WT) control plants under stressed conditions, the ARP1 transgenic plants demonstrated improved height and root length and higher chlorophyll content. Under …

The Effect Of Nuciferine On The Renal Dysfunction Following Ischemia/Reperfusion Injury, Sundus Farag Sallabi

Theses

Renal Ischemia-Reperfusion Injury (IRI) is an inevitable consequence of some surgical procedures and clinical conditions such as renal transplantation and aortic cross-clamping. The pathophysiology of renal IRI includes oxidative stress, an aggravated inflammatory response, apoptotic cell death, and fibrogenesis. These pathophysiological processes underlying renal IRI lead to the development of Acute Kidney Injury (AKI). Therefore, there is a need for effective and affordable therapeutic agents, such as phytochemical compounds to mitigate this injury. Nuciferine (NF), is a phytochemical compound extracted from the plant Nelumbo nucifera Gaertn and has been selected for its antioxidant and anti-inflammatory properties as demonstrated in the …

Topological Indices And Their Applications In Designing Drugs, Fedaa Ismail Abunawa

Theses

This research delves into the use of indices, in the field of drug design with a specific focus on anticancer medications. Topological indices, values derived from representations of chemical structures provide meaningful connections to the physical and chemical characteristics of molecules. These Indices act as tools for predicting behavior playing a vital role in crafting therapeutic drugs. The study primarily delves into topological indices like the Sombor index, Randi´c index, and Atom Bond Connectivity (ABC) index, which are calculated for structures and their relationships with physical properties such as molar volume, refractive index, and flash point are explored using statistical …

Cellular Automata Modeling Approach Of Addiction, Ruba Hameed

Theses

The purpose of this thesis includes the application of a mathematical model, as well as cell automata simulation, to shed light on the behavior of addiction spread in a population. The model describes the key determinants of drug addiction which includes peer influence, availability of substances, support networks, and awareness campaigns. The research aims to gain insights into the underlying mechanisms and patterns of addiction spread to develop effective prevention and intervention strategies.

The study begins by creating a discrete dynamical system that captures the transitions between 4 different states of substance use, including non-users (N), experimental users (E), recreational …

Studies On The Corrosion Of Bronze Artifacts From Sarouq Al-Hadid And Al-Qusais Archeological Sites In Dubai, Uae, Zainab Ali Salmin

Theses

This thesis compares the status of bronze artefacts from two archaeological sites in Dubai (UAE): the Sarouq Al-Hadid site (Stone Age to Early Islamic Period) and the Al- Qusais site (Late Bronze Age to Early Iron Age). The main objective of this research is to understand the two sites' environment and their influence on the corrosion of archaeological bronze artifacts found at the sites. This study uses mCed methods to comprehensively understand the corrosion behavior of bronze objects, depending on their burial environment. The two different sites presented different soil types and rates of corrosivity on the buried bronze artifacts, …

Using Bayesian Multispecies Models To Evaluate Fish And Invertebrate Detection Probability And Distribution In The Hypersaline Bahia Grande Tidal Basin, Roy M. Ulibarri, Catherine M. Eckert, David Hicks, David Montagne, Brandon Jones, David R. Stewart

School of Earth, Environmental, & Marine Sciences Faculty Publications

Objective

In 2000, the Laguna Atascosa National Wildlife Refuge acquired the Bahia Grande (Texas) management unit, a space that had lain barren and arid for 70 years. A large cooperative partnership launched a restoration project to replenish the basin and recover its original tidal hydrology. In 2005, the construction of a pilot channel successfully restored water throughout the basin, and plans to eventually widen the channel were developed. Our study aims to evaluate an estuarine habitat restoration by assessing ecological drivers and the impacts on species diversity.

Methods

We evaluated species richness, detection/occupancy rates, and species–habitat relationships, and we estimated …

Soil Saturation Limits Early Oak Establishment In Upland Pastures For Restoration Of Atlantic Oak Woodlands, Thomas R. Murphy, Mick E. Hanley, Jon S. Ellis, Paul H. Lunt

School of Geography, Earth and Environmental Sciences

With woodland expansion providing a nature-based solution to help tackle anthropogenic climate change, the persistence and regeneration of fragmented Atlantic oak woodland is a critical feature of the wilding of uplands and conservation of Temperate Rainforests in Western Europe. Predicted shifts in precipitation with climate change are likely to be a major determinant of tree recruitment here, yet our understanding of the threshold effects of high soil moisture on oak establishment is limited, particularly at early-life-history stages when trees are most vulnerable. We address this gap in knowledge by investigating the effect of soil saturation states on; 1) the capacity …

Ceo Characteristics And Risk-Taking Under Economic Policy Uncertainty, Ivan Stetsyuk, Ayca Altintig, Kerim Peren Arin, Moo Sung Kim

All Works

This paper investigates the effects of such CEO characteristics as gender, age, and education on the CEOs’ risk-taking behavior during periods of economic policy uncertainty. The paper utilizes Execucomp, BoardEx, and Compustat data from 2005 to 2017 in order to give a novel perspective on how CEO characteristics may provide differing risk-taking positions when faced with varying levels of uncertainty. The results offer robust evidence that older CEOs generally take less risk—regardless of the level of economic policy uncertainty. However, more educated CEOs take less risk only during economically uncertain times. The results also indicate that while female CEOs tend …

Moss Biomonitoring Of Lead Emissions From Hillsboro Airport, Daria Kolpakov

University Honors Theses

The objective of this experiment was to use biomonitoring as a method to determine lead concentration levels around Hillsboro Airport in Hillsboro, Oregon. Twenty-two samples were collected within a 2 km radius around Hillsboro Airport using a randomized sampling strategy. The concentrations of lead within the samples were determined using ICP-MS. The average lead concentration was (2.8 ± 5.0) mg/kg with a peak value of 21.6 mg/kg 0.57 km from Hillsboro Airport. As the average lead concentration was substantially skewed, Hillsboro Airport is likely to be the source of the lead increase.

A Thorough Examination Of Different Elisa Kits To Determine The Concentration Of S100b Linked To Intracranial Hemorrhage, Anthony Phan

University Honors Theses

Background: Traumatic Brain Injuries (TBI) and Intracranial Hemorrhages (ICH) are one of the leading causes of death. Faster diagnosis and treatment positively impact patient outcomes. Two protein markers (UCHL-1 and GFAP) were approved by the FDA as an indicator for prediction indicators of an ICH or moderate TBI.

Methods: In this project, the S100 Calcium Binding Protein B (S100B) was measured by performing an enzyme-linked immunoglobulin assay (ELISA) on the placebo arm of the Prehospital Tranexamic Acid Use for Traumatic Brain Injury" clinical trial. The aim of this project is to compare glial fibrillary acidic protein (GFAP) concentrations that were …

Exploring Secondary Teachers' Digital Curricular Autobiographies As A Path Towards Digital Equity: A Currere Journey, Douglas S. Vandyke

Dissertations

Combining a narrative approach with portraiture and theoretically framed by reconceptualism and critical digital pedagogy, this study explores participants’ beliefs about and experiences using information and communication technologies (ICT) for learning. It also explores participants’ understanding of digital learning as essential to educational equity in a postdigital society. Participants were secondary teachers serving socio-economically marginalized Black and Latinx students across four public high schools in Chicago. Through a series of semi-structured interviews each constructed a version of their digital curricular autobiography (currere). Through this reflection, participants recalled their own experiences being excluded from learning which contributed to their …

A Convergent Parallel Mixed Methods Examination Of The Impact Of Graduate Student Loan Balances On Overall Quality Of Life Among Clinical Psychologists With Psyd Degrees, Lekai James

Dissertations

Graduate student loan debt in psychology, particularly for those with Doctorate in Psychology (PsyD) degrees in clinical psychology, is highly problematic. Previous research has shown that student loan debt negatively impacts quality of life (QOL) by affecting subjective well-being (SWB) and life satisfaction (LS). This study used a convergent parallel mixed method approach, guided by bottom-up spillover theory and Maslow’s hierarchy of needs, to explore the relationship between QOL and total graduate student loan balances, as well as the effects of income and monthly student loan payments on QOL among PsyD graduates. Participants (N = 16) completed a survey with …

The Utilisation Of Mushroom Leftovers, Oats, And Lactose-Free Milk Powder For The Development Of Geriatric Formulation, Snigdha Paul, Ravinder Kaushik, Shuchi Upadhyay, Ansab Akhtar, Prince Chawla, Naveen Kumar, Saurabh Sharma, Pooja Rani

School of Medicine Faculty Publications

This study aims to focus on developing a food supplement for the geriatric population using disposal mushrooms, oats, and lactose-free milk powder. Lactose intolerance is most common in older adults, raising the demand for lactose-free foods. One of the major global challenges currently faced by humankind is food waste (FW). Most of the food that is produced for human consumption has not been utilized completely (1/3rd-1/2 unutilized), resulting in agricultural food waste. Mushrooms are highly valuable in terms of their nutritional value and medicinal properties; however, a significant percentage of mushroom leftovers are produced during mushroom production that do not …

Who Unveils A Digital Health Promoter Harnessing Generative Ai For Public Health

Saudi Medical Journal

No abstract provided.

Three-Dimensional Imaging Studies In Mice Identify Cellular Dynamics Of Skeletal Muscle Regeneration, Brittany C. Collins, Jacob B. Shapiro, Mya M. Scheib, Robert V. Musci, Mayank Verma, Gabrielle Kardon

Health and Human Sciences Faculty Works

The function of many organs, including skeletal muscle, depends on their three-dimensional structure. Muscle regeneration therefore requires not only reestablishment of myofibers but also restoration of tissue architecture. Resident muscle stem cells (SCs) are essential for regeneration, but how SCs regenerate muscle architecture is largely unknown. We address this problem using genetic labeling of mouse SCs and whole-mount imaging to reconstruct, in three dimensions, muscle regeneration. Unexpectedly, we found that myofibers form via two distinct phases of fusion and the residual basement membrane of necrotic myofibers is critical for promoting fusion and orienting regenerated myofibers. Furthermore, the centralized myonuclei characteristic …

The Divine Stakes Of Human Freedom: Jonas In Dialogue With Schelling, Ian Alexander Moore

Philosophy Faculty Works

In a recent article, Lore Hühn calls for a comprehensive study of the parallels between Schelling’s critique of the will, on the one hand, and the philosophies of nature and technology developed in the twentieth century by students of Heidegger such as Hannah Arendt, Günther Anders, and Hans Jonas, on the other. Hühn notes, in particular, that:

essential moments of Jonas’s ethics of responsibility, with its critique of classical metaphysics’ neglect of the body and nature, cannot be understood without the background of Schelling; this holds as well for Jonas’s speculative figure of the self-retraction of God and for his …

An Examination Of Adverse Childhood Experiences As A Predictor Of Physical Activity In Emerging Adults, Christian Alvarado

Theses and Dissertations

Previous research highlights the impact of adverse childhood experiences (ACEs) on health, yet their association with physical activity (PA) remains underexplored. This study investigated this relationship in a predominantly Hispanic sample of emerging adults, examining whether perceived barriers and benefits to exercise mediate the ACEs-PA relationship. A total of 442 college students aged 18-29 completed all measures. ACEs were assessed using the Adverse Childhood Experiences Questionnaire, PA levels through the International Physical Activity Questionnaire-Short Form (IPAQ-SF), and perceived exercise barriers/benefits via the Exercise Benefits/Barriers Scale. Bootstrapped Pearson correlations indicated a significant negative association between perceived barriers to exercise and PA …

June 2024 News, Office Of Sustainability

Office of Sustainability Newsletter

No abstract provided.

Grazing Annual Pastures – Using Feed On Offer (Foo) As A Guide, Department Of Primary Industries And Regional Development, Western Australia

Animal production and livestock factsheets

Grazing management in winter and spring in South West Western Australia (SW WA) can manipulate the quality, quantity and composition of pasture. These pasture changes can increase livestock feed efficiency and productivity, reduce insect populations and improve pasture persistence. Seasonal grazing based on feed on offer (FOO) is described here to maximise stocking rate and pasture production.

The Department of Primary Industries and Regional Development recommends using feed measurements and feed budgeting to increase productivity and reduce livestock health risks.

Boosting Winter Pasture Growth, Department Of Primary Industries And Regional Development, Western Australia

Grains and other field crops factsheets

Applying gibberellic acid or nitrogen fertiliser to pasture in winter can increase dry matter production of grasses and broadleaf weeds and help reduce feed shortages in winter.

Dear Cuba, Kayle Mederos

Digressions: Literary & Art Journal

No abstract provided.