Digital Commons Network^™

Natural Behavior Vs. Subjective Experience In Fish Welfare Assessments, Ronald G. Oldfield

Animal Sentience

Several commentaries on the Oldfield & Bonano (2024) target article proposed that natural behavior should play a larger role in assessing the welfare of fishes in zoos and aquariums. However, the natural-behavior concept of animal welfare has been widely criticized because natural behaviors do not necessarily improve welfare, and unnatural behaviors do not necessarily reduce it. I review the three major concepts of animal welfare — physical health, natural behavior, and affect/feelings — and argue that behavior patterns, whether natural or otherwise, should be evaluated according to their effects on health and subjective experience. Using the affect/feelings concept and the …

Reproductive Trends Of Male Atlantic Spotted Dolphins (Stenella Frontalis) Following Two Hurricanes In The Bahamas, Tara Southerland Pedersen

USF Tampa Graduate Theses and Dissertations

Marine mammals are impacted by hurricanes that may influence reproductive success and genetic diversity. Understanding how populations respond to demographic change is increasingly important as extreme weather events become more frequent. A population of Atlantic spotted dolphins (Stenella frontalis) on Little Bahama Bank in the Bahamas has been observed continuously since 1985. In 2004, two hurricanes struck the region within one month, resulting in the loss of approximately 36% of the population. Population declines can alter the operational sex ratio (OSR), social structure, and encounter rates among potential mates, potentially influencing patterns of reproductive success. Previous molecular studies showed that …

Photophysical Behavior Of Ruthenium-Based Complexes: A Study Of Ligand Variation And Encapsulation In Metal-Organic Frameworks, Delaney S. Sellers

USF Tampa Graduate Theses and Dissertations

Ruthenium (II) polypyridyl complexes have emerged as a prominent class of compounds in inorganic photochemistry due to their structural robustness, reversible redox chemistry, and tunable excited-state dynamics. Central to the investigation of these systems is the ability to manipulate the triplet metal-to-ligand charge transfer state (3MLCT). In the context of photoactivated chemotherapy (PACT), the strategic deactivation of this MLCT state to populate a dissociative triplet ligand field state (3LF) can enable the controlled, light-triggered release of caged cytotoxic agents. This work focuses on understanding the caging mechanism of various ligands to optimize the eventual delivery of cytotoxic ligands. In this …

Development Of A Coupled Hydrological-Nitrogen Modeling Framework For Urban Stormwater Pond Analysis, Tione Grant

USF Tampa Graduate Theses and Dissertations

Urbanization impacts the hydrological and biogeochemical processes that regulate water quality in downstream ecosystems, leading to increased stormwater volume and nitrogen loads in receiving aquatic environments. Although stormwater ponds are designed as simple hydraulic storage basins, they function more like managed ecosystems within urban drainage systems, offering both hydraulic attenuation and passive nutrient treatment. However, nitrogen removal efficiency varies significantly and depends on interactions between hydrological and biogeochemical factors. This thesis details the development, calibration, validation, and sensitivity analysis of a coupled hydrological-nitrogen model framework for Aaran’s Pond, an urban stormwater pond in Hillsborough County, Florida.

A process-based water budget …

Under Pressure: Effects Of The Hot Docs Behavioral Parent Training Program On Caregiver Blood Pressure, Bria N. Ferera

USF Tampa Graduate Theses and Dissertations

Chronic stress is heightened for caregivers of children with heightened disruptive behaviors. With chronic stress supported as a major factor leading to maladaptive parenting and caregiving practices, exploring new ways to collect data on parenting stress remains a critical research priority (van der Lubbe et al., 2024). Behavioral Parent Training (BPT) programs are linked to improved parent-child relationships and reduced problem behavior (Armstrong, 2006; Agazzi, 2021; Patrusky, 2025). However, few studies have used physiological biomarkers in conjunction with self-reported measures to explore connections in this area. Similarly, other physiological considerations are rarely considered upon evaluation of the impacts of BPT …

Trophic Structure Of Reef-Fish Assemblages In The Eastern Gulf Of Mexico Varies By Depth And Reef Type, Jessica L. Van Vaerenbergh

USF Tampa Graduate Theses and Dissertations

Globally, marine ecosystems are increasingly threatened by anthropogenic stressors, leading to reef degradation, changes in reef-fish assemblages, and altered trophic structure. In this study, I investigated reef-fish underwater visual survey data collected over a decade (2013-2023) from paired natural and artificial reefs in the eastern Gulf of Mexico. I applied the novel Normalized Reef Status Index (NRSI) to evaluate how biomass was distributed across the three trophic categories (i.e., Lower Trophic Position (LTP; 2.0-2.9), Central Trophic Position (CTP; 3.0-3.9), and Upper Trophic Position (UTP; ≥4.0). This index is a metric to assess the ecological status of reef systems by investigating …

In Search Of Protective Factors Against Gun-Carrying For Black Male Youth: A Dissertation- Sectional And Longitudinal Analysis Of Secondary Data, Kevin Edward Antwi

USF Tampa Graduate Theses and Dissertations

This study examines the relationship between risk and protective factors and gun carrying among Black male youth using both individual-level and population-averaged effects. Grounded in the risk and protective factors framework and the ecological systems model, the study explores how protective factors at the individual, peer, school, and community levels influence gun carrying at a single point in time and over time. This research aligns with the Grand Challenges of Social Work by preventing gun violence and informing prevention efforts. Using the baseline and 11 waves of data from the Pathways to Desistance Study, the analysis identifies factors that reduce …

Choroidal Imaging Features Of Kif11-Associated Retinopathy: Expanding The Ocular Phenotype, Lily C. Farrell, Justin Muste, Atharva Hudlikar, Xin Ying Rachel Song, Pearse A. Keane, Rupesh Agrawal, Jose S. Pulido

Department of Pathology, Anatomy, and Cell Biology Faculty Papers

BACKGROUND: To characterize foveal architecture and choroidal morphology in KIF11-associated retinopathy using multimodal imaging, and to assess for pachychoroid-like features using quantitative choroidal thickness (CT) and choroidal vascularity index (CVI).

METHODS: In this retrospective case series, multimodal imaging from two patients (four eyes) with genetically confirmed KIF11-associated retinopathy was analyzed. En-face optical coherence tomography (OCT) images of the macular and inferior peripheral retina were spatially aligned to widefield fundus images to enable fovea-centered spatial mapping. The choroid was segmented and binarized on OCT B-scans to derive quantitative macular CT and CVI measurements, and CT measurements in the mid-peripheral and peripheral …

Protocol For Lentiviral Generation And Transduction Of Human-Derived Endometrial Epithelial Organoids To Study Uterine Function And Pathologies

Faculty, Staff and Students Publications

The use of patient-derived endometrial epithelial organoids has revolutionized the field of uterine biology. Here, we present a protocol for generating lentivirus and transducing human-derived endometrial epithelial organoids for the study of endometrial function and pathologies. We describe steps for lentiviral production, lentiviral transduction of endometrial epithelial organoids, and endometrial epithelial organoid passaging. We then detail procedures for validating lentiviral transduction. This protocol allows for knocking down or overexpressing genes of interest, enabling investigation of specific targets in a patient-centric model.

Conformational Cycling Of The Wntless Transporter Drives Trafficking And Secretion Of Wnt Morphogens, Dick J H Van Den Boomen, Thu Uyen Nguyen, Tongyi Dou, Gaya P Yadav, Sukyeong Lee, Zhao Wang, Andrew Lemoff, Xuemei Luo, Sumitha S Menon, Min Zhang, Jin Wang, Zhicheng Jin, Jiansen Jiang, Adrian Salic, Pengxiang Huang

Faculty, Staff and Students Publications

Wnt proteins are lipid-modified morphogens fundamental in development and disease. During Wnt biogenesis, the G-protein-coupled receptor (GPCR)-like transporter Wntless (WLS) escorts lipidated Wnts from the endoplasmic reticulum to the plasma membrane, then transfers them to extracellular carriers, forming active and soluble morphogen-carrier complexes. To dissect the mechanisms involved, we solve cryo-EM structures of Wnt-bound WLS and unliganded WLS, and perform structure-guided functional experiments. Wnts engage WLS via three conserved hairpins, which are all required for Wnt trafficking to the cell surface and carrier-mediated secretion. Wnt release from cells is driven by dramatic conformational changes in the WLS transmembrane domain, reminiscent …

Protocol For Purifying And Sequencing Cell Subpopulations Based On Rna Fish Signal In Planaria, Dung M Vuu, Carolyn E Brewster, Kate E Hall, Blair W Benham-Pyle, Alejandro Sánchez Alvarado

Faculty, Staff and Students Publications

Isolation and characterization of rare cell types in non-model organisms present a challenge. Here, we provide a protocol to purify specific cells from planaria for downstream RNA sequencing. We employ a one-step dissociation and fixation method that avoids RNA-degrading formaldehyde. We label cells using RNA fluorescence in situ hybridization (RNA FISH) and flow sort to enrich sequencing reads from cells of interest for deeper biological insight.

For complete details on the use and execution of this protocol, please refer to Mann et al.1

Technical Disclosure: A Unified Planetary Scale Architecture For Non-Equilibrium Thermodynamics, Cryptographic Governance, And Automated Labor Sovereignty, Christopher L. Eckes

Defensive Publications Series

This disclosure details a unified macro-system architecture designed to facilitate, manage, and scale the physical, administrative, and labor operations of a planetary-scale infrastructure array. Current technological ecosystems are fundamentally bottlenecked by active thermal throttling, localized supply-chain speculation, and closed digital rights management (DRM) frameworks that fragment development.

This multi-domain framework resolves these limitations through a three-layer topology:

1. The Physical Layer: Passive geometric routing of multi-variant heat-flux fields, non-chemical acoustic standing-wave cellular matrices, and turbine-free direct-loop magnetohydrodynamic (MHD) induction.
2. The Coordination Layer: Zero-knowledge edge-confined cognitive scaffolding, non-fiat logistical hypergraphs (M-EHN), and transparent game-theoretic defensive de-escalation matrices.
3. The Execution Layer: Open-standard computer-aided …

The Overdrive Anomaly: A Philosophical And Technical Appeal For Aligned Cognitive Scaffolding In Tomorrow's Stewards, Christopher L. Eckes

Defensive Publications Series

This appeal exposes a critical structural risk in the trajectory of modern global technology: the destabilizing asymmetry between exponential physical infrastructure and linear human cognitive development. By optimizing resources exclusively for external execution milestones—such as aerospace transit, automated manufacturing, and centralized compute networks—modern innovation paradigms treat human agency as a passive, downstream variable.

This paper demonstrates that without the systemic deployment of cryptographically secure, localized cognitive mentorship and sovereign security scaffolding, accelerating technological matrices will induce widespread psychological alienation and cognitive fragmentation. We present a formal, non-negotiable appeal to the global engineering community to reprioritize individual psychological sovereignty as the …

Systemic Integration Of Lifelong Agentic Mentorship, Contextual Scaffolding, And Sovereign Guardian Protocols In K-12 Pedagogy, Christopher L. Eckes

Defensive Publications Series

This specification details the architecture for a non-centralized, lifelong educational operating system that integrates machine learning as an individualized cognitive accelerator, psychometric auditor, and sovereign security layer. This protocol systematically replaces age-segregated, standardized instructional rotations with an immutable Dual-Focus Baseline Matrix paired with a localized Lifelong Cognitive Mentor.

By tracking an individual's development continuously from the primary entry point (K-1) through adulthood, the system implements Probabilistic Scaffolding—balancing automated aptitude mapping with deliberately engineered "negative learning" spaces. Furthermore, it incorporates an active Guardian Sensor Layerutilizing real-time linguistic and behavioral anomaly detection to insulate the child from predatory coercion and manipulative algorithm …

Contribution Of Animals To Biomedical Advancements In The Current Era: A Narrative Review, Leena Rajathy Port Louis, Mani Rajarathinam, Prithiviraj Nagarajan, Divya Sekar, Nisha Perumal

The Thai Journal of Pharmaceutical Sciences

Animal research has played a major role in the development of vaccinations and therapies for illnesses such as tetanus, polio, meningitis, hepatitis, and Severe Acute Respiratory Syndrome Coronavirus 2. For every prescription drug available today, animal testing and research have contributed immensely. This narrative review aims to explore the contribution of animals to biomedical advancements in the current era, which involved a search of peer-reviewed literature using electronic databases such as Scopus, Web of Science, and PubMed. In current biomedical research, animals help develop new treatments for long-term illnesses such as cancer, HIV, and Alzheimer’s. Animals also aid in the …

Anti-Inflammatory Activities Of Muntingia Calabura L. In Monosodium Urate-Induced Acute Gout Arthritis: Regulation Of Nlrp3 And Il-1Β, Nita Parisa, Eva Rianty, Nia Savitri Tamzil, Debby Handayati Harahap, Veny Larasati, Bintang Arroyantri Prananjaya, Theodorus Theodorus

The Thai Journal of Pharmaceutical Sciences

Background: Acute gout arthritis, which is caused by hyperuricemia, is a common inflammatory joint disease, leading to monosodium urate (MSU) crystal deposition. These crystals trigger inflammation, causing pain and significantly impairing the patient’s quality of life. Colchicine is commonly used to treat and prevent acute gout arthritis, but it has several side effects. Cherry tree (Muntingia calabura L.) leaves, which possess anti-inflammatory properties, show promise as an alternative treatment. The potential benefit of the leaves may be due to the flavonoid content.
Objectives: This study aimed to assess the anti-inflammatory activities of cherry tree leaves in an MSU-induced acute …

Microwave-Assisted Extraction Optimization And Bioactivity Assessment Of Flavonoid-Rich Extract From Lantana Camara L. Leaves In Zebrafish Epilepsy Model, Prem Kumar B R, Shwetha Krishnamurthy, Gouri Nair, Sundara Saravanan Kamatchi

The Thai Journal of Pharmaceutical Sciences

Background: Lantana camara L. (Verbanaceae) is known for its bioactive compounds and has been reported for its potential therapeutic applications. Flavonoids from natural sources are acknowledged for their antioxidant and neuroprotective properties, suggesting a possible role in seizure management.
Objectives: This study intended to optimize the microwaveassisted extraction (MAE) of flavonoid-rich extract from L. camara L. leaves utilizing a designof- experiment approach and evaluate its antiepileptic property using the zebrafish model.
Materials and Methods: Four solvents (ethyl acetate, acetone, ethanol, and water) were initially used, with ethanol yielding the highest total flavonoid content (TFC). A central composite design was employed …

Samannachan: A Thai Traditional Herbal Recipe With Cytotoxic Potential Against Breast, Cervical, And Ovarian Cancers, Perika Monkanna, Srisopa Ruangnoo, Pakakrong Thongdeeying, Arunporn Itharat, Pranporn Kuropakornpong, Reawfang Sriyom, Apinya Wiboonwattanakit, Kanyarat Namphonsan, Paponpachara Pibanpaknitee, Neal M. Davies

The Thai Journal of Pharmaceutical Sciences

Background: Samannachan (SMC) is a Thai traditional herbal recipe that has been used since 2005 at Khampramong Temple, Sakon Nakhon, to treat more than 6,000 cancer patients. However, scientific evidence supporting cytotoxic effects remains limited.
Objectives: The objective of the study is to evaluate the cytotoxicity of the SMC recipe and its ten herbal components against breast, cervical, and ovarian cancer cells compared to normal cells.
Methods: Cytotoxic activity was assessed using the sulforhodamine B (SRB) assay on breast (MCF-7, T47D, MDA-MB-231), cervical (HeLa), and ovarian (SK-OV-3) cancer cell lines, as well as on non-cancerous human keratinocytes (HaCaT). Both aqueous …

Real-Time Iot-Enabled Dissolved Oxygen Monitoring And Automated Wastewater Recirculation In Constructed Wetlands, Sivasankar Pandiarajan, Vanitha Sankararajan, Devarinti Chandu

Mansoura Engineering Journal

Wastewater treatment is necessary for environmental conservation and combating water pollution. This study demonstrates real-time dissolved oxygen (DO) monitoring in constructed wetland treatment. The system would ensure an adequate supply of oxygen through automated water circulation whenever the level is below 4 mg/L, and shut down when it reaches the normal level. From experiments conducted, it was observed that within three automated circulation processes, it is possible to increase DO concentrations from 0.5 mg/L to 5.0 mg/L. Additionally, Total Dissolved Solids reduced from 1,380 ppm to 920 ppm. pH also stabilized from 8.38 to 7.9. In this system, data is …

When The Weeds Strike Back: Rethinking Aphis's Regulation Of Genetically Engineered Plants Post-National Family Farm Coalition V. Vilsack, Reagan Powers

Tennessee Journal of Law and Policy

No abstract provided.

Philosophical Meditations On The Covid-19 Pandemic: What Have We Learned So Far?, Gregory Fernando Pappas

Dewey Studies

No abstract provided.

Get It Together: Education In A Dangerous Time, John Lupinacci

Dewey Studies

No abstract provided.

The Mask As Metaphor: Deweyan Reflections In The Time Of A Pandemic, Todd Lekan

Dewey Studies

No abstract provided.

Racial Justice And The Image Of Public Health, Marilyn Fischer

Dewey Studies

No abstract provided.

Knowledge, Attitude, And Practice Regarding Vitamin D Among Adults In Western Libya: Assessment And Socio-Demographic Influences, Abdounasser Albasher Omar, Kawther Adaila, Mofida M. Alfaid, Abdurrahman M Sweidan, Ruqayah Kasheem, Samia Emhemmed Abadi, Abdulnabi Ali Abushita, Hafsa A. Alemam

Al-Bahir

Vitamin D deficiency is a widespread public health concern, necessitating a clear understanding of knowledge, attitudes, and practices (KAP) among populations. Therefore, this study was conducted to assess Libyan citizens' knowledge, attitude, and practice (KAP) regarding vitamin D in the western region of Libya. This study was carried out between June and September of 2021. A questionnaire was distributed across the study area and the complete responses were 314, with 62.7% were females and 37.3% were males.  The scores were calculated as percentages and statistically tested. Additionally, the impact of some socio-demographic factors (age, gender, education level, job, and salary) …

Production, Purification, And Crystallization Of The Recombinant Her2 Tyrosine Kinase Domain (Her2-Tkd), Edanur Topalan, Hali̇li̇brahi̇m Çi̇ftçi̇, Hasan Demi̇rci̇

Turkish Journal of Chemistry

The human epidermal growth factor receptor 2 tyrosine kinase domain (HER2-TKD) is an important therapeutic target in oncology. In this study, we developed a practical and cost-effective approach for producing soluble recombinant HER2-TKD in Escherichia coli as a basis for structure-based drug discovery. The gene encoding HER2-TKD was cloned into a pET28a(+) expression vector and expressed in E. coli. Since the protein was initially obtained as inclusion bodies, solubilization with 1.5% sarcosyl was applied to recover it in soluble form. The purified protein was obtained through size-exclusion chromatography, followed by tag removal using reverse affinity purification. Crystallization trials were performed …

Quantum Engineered Mxene–Graphene–Plasmonic Nanocomposites For Next-Generation Transparent And Flexible Space Photovoltaics, Arash Vaghef-Koodehi

Turkish Journal of Chemistry

This study presents a quantum‑engineered, tricomponent heterostructure comprising Ti3C2T MXene quantum dots (2–5 nm), single‑layer graphene, and plasmonic gold nanoparticles (15 ± 3 nm) uniformly embedded within electrospun polyacrylonitrile nanofibers. This integrated architecture demonstrates a remarkable combination of optical transparency (89.3 ± 1.1%) and power conversion efficiency (19.7 ± 0.4%) under AM0 solar illumination, representing 340% enhancement over state‑of‑the‑art transparent photovoltaic devices. A multiscale computational framework, bridging density functional theory and device‑level drift-diffusion modeling, identifies optimal interlayer spacing (3.4 ± 0.1 Å) as the key to achieving 89.3% charge‑transfer efficiency. Concurrently, localized surface plasmon resonances at 532 nm generate electromagnetic …

Efficient Heterogeneous Photo-Fenton Degradation Of Azo Dyes Using The Nanocomposite Mgfe2o4/Mos2, Zahra Zeinali, Leila Ershadi Afshar, Naz Chaibakhsh, Farnaz Isapour

Turkish Journal of Chemistry

In the present work, a facile hydrothermal route was employed to synthesize the nanocomposite MgFe2O4/MoS2, which acted as a heterogeneous photo-Fenton catalyst for the degradation of a synthetic diazo dye, Acid Blue 113 (AB113). The nanocatalyst produced underwent analysis using multiple characterization techniques. The parameters influencing the oxidative reaction were statistically modeled and optimized using response surface methodology. Optimal degradation efficiency for AB113 (94.92%) was attained at pH 8.79 using 10 mg of MgFe2O4/MoS2 nanocatalyst, 1.6 mL of H2O2, and a reaction duration of 27 min. The synergistic effect resulting from the formation of electron-hole pairs renders the combined photocatalysis …

Electrochemical Biosensing Of Alpha-Fetoprotein Based On Carboxylated Multi-Walled Nanotube-Polyazur A (In Des)-Gold Nanoparticles, Merve Yilmaz Çilçar, Meli̇ke Bi̇lgi̇ Kamaç

Turkish Journal of Chemistry

AFP, a cancer biomarker, is monitored during fetal development and in the serum of pregnant women. Sensitive and rapid monitoring of AFP is crucial for effective management. In this study, screen-printed carbon electrodes (SPCEs) modified with multi-walled carbon nanotubes (MWCNT-COOH), polyAzur A (PAA), which was prepared in a deep eutectic solution (DES), and gold nanoparticles (AuNP) were fabricated. AFP biosensors were developed for practical, sensitive, low-cost, and rapid detection of AFP. Optimizations of nanostructures (MWCNT-COOH, AuNP) and polymers (PAADES) were performed. The MWCNT-COOH, PAADES, and AuNP-modified SPCEs were characterized by FE-SEM-EDX, FTIR, and XRD techniques. The amounts of 6-MOH, APTES, …

Alcohol-Based Microextraction Of Rhodamine 6g From Soft Drink, Food, And Cosmetic Samples, Mustafa Soylak, Esra Yamaner, Özgür Özalp

Turkish Journal of Chemistry

By using alcohol-based solvent extraction without tetrahydrofuran, a liquid–liquid microextraction technique was developed for the separation–enrichment of trace levels of Rhodamine 6G from complex matrices, including soft drinks, food, cosmetics, hygiene products, and natural waters. Numerous experimental parameters were tuned, including pH, alcohol volume, ultrasonication time, and sample and eluent volume. The enrichment factor (EF), limit of detection (LOD), and limit of quantification (LOQ) were used to assess the analytical performance of the suggested approach. The LOD and LOQ were 6.92 ng mL−1 and 23 ng mL−1, respectively, and the EF was 14. Through the use of the standard addition …