Digital Commons Network^™

Lateral Dispersal Of Adult Trichoptera: Flight Distance And Traveling Pattern, Peilin Tan

All Theses

Trichoptera species (caddisfly) are usually used as bio-indictors for surface water quality due to their sensitivity to environmental changes, and if assessing water quality with light-trapped adults, knowing their travelling patterns will improve the accuracy of such assessments. To investigate how far a caddisfly will migrate from their emerging stream, three streams in South Carolina with different widths (Wildcat Creek 1.2 m, Brasstown Creek 11.2 m and Chattooga River 26.95 m) were selected for this study with light traps placed at three distances (0 m, 50 m, 100 m) from the streams. How long and when? Both species richness and …

Microbial-Chemical Degradation Of Styrene In Co-Mingled Plumes With Ethylbenzene, Benzene, And Carbon Tetrachloride, Marcela C. Flórez-García

All Theses

Industrial sites contaminated with a complex matrix of chemicals represent a problem for the ecosystem and a high risk for the health of all individuals. That is why remediation strategies are needed to mitigate this environmental impact. The latex zone, located at the Corteva industrial site in San Lorenzo, Argentina, is the subject of this research. The environmental impacts in this area are a consequence of petrochemical operations carried out for many years.

Monoaromatic hydrocarbons such as styrene, ethylbenzene, and benzene, and chlorinated methanes like carbon tetrachloride, chloroform, dichloromethane, and chloromethane are among the contaminants identified at the site that …

Avian Temporal Trends And Habitat Relations Within The South Atlantic Coastal Zone, Jordan Mccall

All Theses

Despite the significance of the Hobcaw Barony in a region historically known as a waterfowl hunting paradise, the long history of the Belle W. Baruch Institute of Coastal Ecology and Forest Science on Hobcaw Barony and the establishment of the James C. Kennedy Waterfowl and Wetlands Conservation Center at the Baruch Institute in 2014, no comprehensive study of waterbirds has occurred on site. Thus, basic information, such as the number of species present, relative abundance, migration chronology, and habitat use and selection, is lacking. This research aims to form a baseline of waterbird and wetland data on the Hobcaw Barony …

Higher Abundance Of Disturbance-Favoured Trees And Shrubs In European Temperate Woodlands Prior To The Late-Quaternary Extinction Of Megafauna, Elena A. Pearce, Florence Mazier, Ralph Fyfe, Charles W. Davison, Signe Normand, Maria Antonia Serge, Paolo Scussolini, Jens Christian Svenning

School of Geography, Earth and Environmental Sciences

Large herbivorous mammals strongly influence vegetation structure by creating and maintaining open areas and causing disturbance within closed woody habitats. The herbivores alive today in Europe are only a small remnant of the large species that existed in high diversity and abundance before modern humans. The extinction of so many large herbivores during the last 50,000 years, and the loss of megaherbivores (body weight ≥1000 kg) from most of the continent before the Pleistocene–Holocene transition, is likely to have had cascading effects on vegetation structure and composition. To evaluate these effects within the European temperate forest biome, we examine the …

Genetic Analysis Of A Novel Population Of Southern Flying Squirrels (Glaucomys Volans) Found In Lincoln, Ne, Jennifer Wettschreck

Biology Theses, Dissertations, and Student Creative Activity

In 2018 a novel population of southern flying squirrels (Glaucomys volans) was discovered in Lincoln, Nebraska, 80 km outside of their known range. Southern flying squirrels are designated as a “Tier-1” species of concern within Nebraska and the origin of this new population is of interest to state biologists. This study will provide insight into the probable origin of this new population by comparing genetic samples from known populations of southern flying squirrels. Museum specimens were collected from two well-established populations in Florida and Texas, as well as samples from individuals native to Nebraska (Indian Cave State Park) to compare …

Investigating The Role Of Feature Integration Demands On Attention Efficiency., Emma Kurtycz

College of Arts & Sciences Senior Theses

Feature integration and visual selective attention have been studied together to understand how we attend to different objects, often through conjunction search tasks. Conjunction search tasks involve searching for an object defined by multiple visual features in the presence of distractors. However, few studies have examined how different visual feature combinations impact search performance. Motivated by the functional and structural organization of the brain, this study investigated how differing feature combinations that theoretically place varying degrees of demand on feature integration impact attention efficiency. In two experiments, I explored reaction times (RT) and target detection sensitivity (d’) across varying set …

Soil Dynamics In Carbon, Nitrogen, And Enzyme Activity Under Maize–Green Manure Cropping Sequences, Cassio Hamilton Abreu-Junior, Wanderley José De Melo, Roberto Alves De Oliveira, Paulo Henrique Silveira Cardoso, Raíssa De Araujo Dantas, Rodrigo Nogueira De Sousa, Dalila Lopes Da Silva, Thiago Assis Rodrigues Nogueira, Arun Dilipkumar Jani, Gian Franco Capra, Gabriel Maurício Peruca De Melo

Biology, Agriculture and Chemistry Faculty Publications and Presentations

The diversification of cropping sequences has a positive impact on soil organic carbon, while improving nutrient cycling and crop yields. The objective of this research was to assess amylase, cellulase, C and N dynamics, and maize yield on a low fertility oxisol in the Brazilian Cerrado. The experiment was conducted under field conditions during three maize crop succession cycles. The treatments consisted of cultivating maize during the summer, after sorghum and lablab cropped as green manure and fallow during the winter. Higher maize yields were achieved by sorghum–maize succession compared to monocropping, due to higher N fertilizer and biomass inputs …

Relative Muscular Effort In The Older Adults During The Sit-To-Stand Task: Monitoring Neuromuscular Reserve And Movement Limitations, Nayun Ahn, Michael H. Haischer, Cara L. Lewis, Kristof Kipp

Exercise Science Faculty Research and Publications

Background

Due to lower maximum strength, older adults purportedly need to exert greater muscular effort to stand up from a chair. This study investigated joint-specific muscular effort during a sit-to-stand by calculating relative-muscular-effort and investigating differences between healthy older and young adults.

Methods

Fifteen older (age: 69.9 ± 3.5 years) and 15 young (age: 22.2 ± 2.6 years) adults performed five self-paced sit-to-stand trials. Kinematic and kinetic data were collected and used to calculate inverse dynamics net joint moment. Peak isometric knee and hip extensor torques were measured and used as inputs to regression models that predicted angle- and velocity-dependent …

Association Between Microsatellite Instability Status, Clinicopathological Features And Mitochondrial Dna Amplification In Patients With Colorectal Cancer, Junmi Lu, Hong Tan, Tao Guo, Xi Chen, Zhongyi Tong

Faculty, Staff and Students Publications

The relationship between BRAF-V600E mutations, mitochondrial DNA amplification and microsatellite instability-high (MSI-H) in colorectal cancer (CRC) has yet to be fully elucidated. The aim of the present study was to assess the association between the MSI status and BRAF-V600E gene mutations/clinicopathological features/mitochondrial DNA amplification in CRC. A non-interventional study analysis was performed using the clinicopathological features of 455 patients with CRC. Immunohistochemistry was used to evaluate four mismatch repair proteins (MutS homolog 2, MutS homolog 6, MutL homolog 1 and postmeiotic segregation increased 2), Ki-67 index, and programmed cell death protein 1 (PD-1) and programmed cell death-ligand 1 (PD-L1) expression. …

Development And Evaluation Of A Training Curriculum To Engage Researchers On Accessing And Analyzing The All Of Us Data, Julie R Coleman, Jasmine N Baker, Shamika Ketkar, Ashley M Butler, Laterrica Williams, Latanya Hammonds-Odie, Elizabeth G Atkinson, Debra D Murray, Brendan Lee, Kim C Worley

Faculty, Staff and Students Publications

OBJECTIVE: The All of Us Evenings with Genetics (EwG) Research Program at Baylor College of Medicine (BCM), funded to engage research scholars to work with the All of Us data, developed a training curriculum for the Researcher Workbench, the platform to access and analyze All of Us data. All of Us EwG developed the curriculum so that it could teach scholars regardless of their skills and background in programming languages and cloud computing. All of Us EwG delivered this curriculum at the first annual All of Us EwG Faculty Summit in May 2022. The curriculum was evaluated both during and …

Steering Research On Mrna Splicing In Cancer Towards Clinical Translation, Olga Anczukow, Frédéric H-T Allain, Brittany L Angarola, Douglas L Black, Angela N Brooks, Chonghui Cheng, Ana Conesa, Edie I Crosse, Eduardo Eyras, Ernesto Guccione, Sydney X Lu, Karla M Neugebauer, Priyanka Sehgal, Xiao Song, Zuzana Tothova, Juan Valcárcel, Kevin M Weeks, Gene W Yeo, Andrei Thomas-Tikhonenko

Faculty, Staff and Students Publications

Splicing factors are affected by recurrent somatic mutations and copy number variations in several types of haematologic and solid malignancies, which is often seen as prima facie evidence that splicing aberrations can drive cancer initiation and progression. However, numerous spliceosome components also 'moonlight' in DNA repair and other cellular processes, making their precise role in cancer difficult to pinpoint. Still, few would deny that dysregulated mRNA splicing is a pervasive feature of most cancers. Correctly interpreting these molecular fingerprints can reveal novel tumour vulnerabilities and untapped therapeutic opportunities. Yet multiple technological challenges, lingering misconceptions, and outstanding questions hinder clinical translation. …

Environmental Light Controls The Daily Organization Of Breathing By Activating Brn3b-Expressing Intrinsically Photosensitive Retinal Ganglion Cells In Mice, Aaron A. Jones, Allison R. Spears, Deanna M. Arble

Biological Sciences Faculty Research and Publications

Rhythmic, daily fluctuations in minute ventilation are controlled by the endogenous circadian clock located in the suprachiasmatic nucleus (SCN). While light serves as a potent synchronizer for the SCN, it also influences physiology and behavior by activating Brn3b-expressing, intrinsically photosensitive retinal ganglion cells (ipRGCs). It is currently unclear the extent to which the external light environment shapes daily ventilatory patterns independent of the SCN. To determine the relative influence of environmental light versus circadian timing on the organization of daily rhythms in minute ventilation, we used whole-body plethysmography to measure the breathing of mice housed on a non-entraining T28 cycle …

Investigating The Perceived Invisibility Of The Black Woman Leader In Fortune 500 Companies: Understanding Career Pathways Based On Insight And Intersectionality, Shana Jones Yarberry

Graduate Theses and Dissertations

There is a gap in the literature when examining the intersectionality of race, gender, and class. There is additional distance when evaluating the impact each intersection has on the career development of Black Women (BW) in Fortune 500 companies. The purpose of this study was to use a qualitative approach to investigate how the intersectionality of race, gender, and class impact the career advancement of BW while also identifying perceived barriers, historical patterns of career movement, and organizational efforts to support the ascension of BW in senior leadership. The Systems Theory Framework of Career Development and Intersectionality Theory were examined …

Understanding Support For Former Foster Youth: Independent Living Coordinators Perspectives On Resiliency For Foster Youth In Higher Education, Aaron Abbott

Graduate Theses and Dissertations

This dissertation examines the resilience of former foster youth in higher education, focusing on the perspectives of Independent Living Coordinators (ILCs) in Arkansas. The study explores the support systems and challenges that foster youth encounter, assessing factors that contribute to or hinder their educational success. Using a qualitative methodology with semi-structured interviews, it identifies key protective factors such as emotional support, stable mentorship, and institutional programs that promote resilience among foster youth. The findings suggest that tailored interventions and a strengths-based approach can significantly improve outcomes for this vulnerable student population. This research contributes to existing literature by offering insights …

Synthesis And Process Optimization Of Cellulose Nanocrystals From Miscanthus X. Giganteus For Commercial Viability, Jaspreet Kaur

Graduate Theses and Dissertations

Cellulose nanocrystals (CNCs), derivatives of an abundant biopolymer, i.e., cellulose, are emerging as promising alternatives to petrochemical-based products due to their unique properties, including biodegradability, low toxicity, high strength, low density, large surface area and low coefficient of expansion. CNCs have diverse applications ranging from food packaging and textiles to drug delivery and medical implants, etc. Despite their potential, the widespread commercialization of CNCs faces significant hurdles owing to the high environmental burden and production costs. They are mainly driven by the commonly used source utilized for CNC synthesis i.e., wood and the intensive synthesis process i.e., requirement of …

Integrating Sustainability And Food Safety Through Quantitative Microbial Risk Assessment And Life Cycle Assessment Of Low-Moisture Foods, Jessica Bain

Graduate Theses and Dissertations

Food safety and sustainability are critical concerns in the food industry. However, these areas are often evaluated separately, leading to an incomplete understanding of the overall impact of food production on human health. This dissertation aims to integrate food safety with sustainability to provide a comprehensive assessment of the impact of low-moisture foods on human health, using the almond processing supply chain as a case study.

In addition to conducting life cycle assessments (LCA) of almond processing, wheat flour production, and dried apple processing, this dissertation aims to create a framework to bridge the gap between sustainability and food safety. …

2024 Atlantic Flyway Review (Spring Migration), Aaron Given

North American Bird Bander

No abstract provided.

A New Angle On Using Mist-Nets To Capture Wintering Grassland Birds, John A. Muller, Erin H. Strasser, Nuwanthika Nagode, Jeremy D. Ross

North American Bird Bander

No abstract provided.

A Summary Of The Nabb Survey Results, Michael Bishop

North American Bird Bander

No abstract provided.

Inaugural Caribbean Flyway Review, Daniele Ventura Del Puerto, E. A. Buckmire

North American Bird Bander

No abstract provided.

Genome-Derived Ampullary Adenocarcinoma Classifier And Postresection Prognostication, Brett L Ecker, Kenneth Seier, Austin M Eckhoff, Gabriella N Tortorello, Peter J Allen, Vinod P Balachandran, Nicola Blackburn, Michael I D'Angelica, Ronald P Dematteo, Daniel G Blazer, Jeffrey A Drebin, William E Fisher, Danielle Fortuna, Anthony J Gill, Marie-Claude Gingras, T Peter Kingham, Major K Lee, Michael E Lidsky, Daniel P Nussbaum, Michael J Overman, Jaswinder S Samra, Ronglai Shen, Carlie S Sigel, Kevin C Soares, Charles M Vollmer, Alice C Wei, Sabino Zani, Robert E Roses, Mithat Gonen, William R Jarnagin

Faculty, Staff and Students Publications

Importance: Ampullary adenocarcinoma (AA) is characterized by clinical and genomic heterogeneity. A previously developed genomic classifier defined biologically distinct phenotypes with greater accuracy than standard histologic classification. External validation is needed before routine clinical use.

Objective: To test external validity of the prognostic value of the hidden genome classifier of AA.

Design, setting, and participants: This retrospective cohort study took place at 6 international academic institutions. Consecutive patients (n = 192) who underwent curative-intent resection of histologically confirmed AA were included. The data were analyzed from January 2005 through July 2020.

Exposures: The multilevel meta-feature regression model previously trained on …

Use Of Hatchery-Raised Fish In Validation Of Daily Age Estimates For Juvenile Common Snook, Philip W. Stevens, Kyle L. Williams, Meredith B. Pfennig, Ryan W. Schloesser, Alexis A. Trotter, Derek P. Crane

Biology

Objective: We investigated the validity of daily age estimates for juvenile Common Snook Centropomus undecimalis by using sectioned and sanded sagittal otoliths. Methods: Common Snook have a protracted spawning season, which is problematic for validation of daily ages because a hatch date—needed to calculate age—cannot be reasonably assigned like it can for species with a short spawning period (<30 days). To help overcome this, two readers independently counted presumed daily increments in otoliths collected from hatchery-reared Common Snook of known age (100–240 days; n = 91). Result: Differences between known ages and those estimated from otoliths were small (mean absolute difference = 3.4 days) for individuals aged 100 days, but these differences increased after 100 days, mainly due to the crowding of increments along the otolith margin. Underestimation of ages was 8% at 120 days, 29% at 180 days, and 36% at 240 days. Conclusion: Ideally, analyses based on counts of daily increments in Common Snook otoliths should be limited to fish with an age of 100 days or younger.

Recreational Fishing For Western Rock Lobster: Estimates Of Participation, Effort And Catch In 2023/24, Claire B. Smallwood, Karina L. Ryan, Alissa C. Tate

Fisheries Research Reports

The Western Rock Lobster (WRL) (Panulirus cygnus) is the most commonly caught Rock Lobster (RL) species in Western Australia. Catches from the commercial and recreational sectors are required to determine and monitor Total Allowable Commercial Catch (TACC), Total Allowable Recreational Catch (TARC) and the proportion of Allowable Harvest Level (AHL) achieved. The TARC is set at 5% of the AHL and evaluated in the harvest strategy based on a 5-year average.

Data for the recreational sector are obtained using phone-recall surveys to provide annual estimates of participation, fishing effort and retained catch (by numbers) from recreational fishers who hold a …

Evaluation Of Industrial Hemp Cultivar And Biochar Rate To Remediate Heavy-Metal-Contaminated Soil From The Tar Creek Superfund Site, Usa, Dietrich V. Thurston, Kristofor R. Brye, David M. Miller, Philip A. Moore Jr., Donald M. Johnson, Mike Richardson

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Soil contamination by cadmium (Cd), lead (Pb), and zinc (Zn) at the Tar Creek superfund site in northeast Oklahoma, United States, remains a threat to the environment and local ecosystem. Phytoremediation with industrial hemp (Cannabis sativa L.) and the use of biochar (BC) have been independently shown to be effective methods to remediate heavy-metal-contaminated soils. The objective of this greenhouse study was to evaluate the effects of industrial hemp cultivar (‘Carmagnola’ and ‘Jinma’), biochar rate (0, 2, 5, and 10% by volume), soil contamination level (low, medium, and high), and their interactions on above- (AG) and belowground dry matter …

Rice Response To Struvite And Other Phosphorus Fertilizers In A Phosphorus-Deficient Soil Under Simulated Furrow-Irrigation, Jonathan B. Brye, Diego Della Lunga, Kristofor R. Brye

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Wastewater-recovered phosphorus (P), in the form of the mineral struvite (MgNH₄PO₄⋅6H₂O), may provide a sustainable alternative to decreasing rock-phosphate reserves. Struvite can be generated via precipitation methods, potentially reducing the amount of P runoff to aquatic ecosystems. The objective of this greenhouse tub study was to evaluate the effects of chemically- and electrochemically precipitated struvite (CPST and ECST, respectively) on above- and belowground plant response in a hybrid rice (Oryza sativa) cultivar grown using furrow-irrigation compared to other common fertilizer-P sources [i.e., triple super phosphate (TSP) and diammonium phosphate (DAP)]. Rice was …

Interpreting The Spatial Distribution Of Soil Properties With A Physically-Based Distributed Hydrological Model, Zamir Libohova, Marcelo Mancini, Hans Edwin Winzeler, Quentin D. Read, Ning Sun, Dylan Beaudette, Candiss Williams, Joshua Michael Blackstock, Sergio H.G. Silva, Nilton Curi, Kabindra Adhikari, Amanda Ashworth, Joshua O. Minai, Phillip R. Owens

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Digital soil maps are commonly data-driven as the development of physically-based models for soil mapping is difficult due to the complexity of soils. However, physically-based hydrologic models have been successful in simulating water dynamics. Since water movement is a major driver of pedogenesis, the physical rules that govern water movement might help explain and predict the spatial variation of soil properties. Here, we demonstrate the novel use of a physically-based, distributed hydrologic model to inform the spatial distribution of soil properties. The Distributed Hydrology Soil Vegetation Model (DHSVM) was utilized to simulate soil moisture content (SM) and water table …

Inflammation, Physical Activity, And Disease-Free Survival In Stage Iii Colon Cancer: Cancer And Leukemia Group B-Southwest Oncology Group 80702 (Alliance), Justin C Brown, Chao Ma, Qian Shi, Felix Couture, Philip Kuebler, Pankaj Kumar, Benjamin Tan, Smitha Krishnamurthi, Victor Chang, Richard M Goldberg, Eileen M O'Reilly, Anthony F Shields, Jeffrey A Meyerhardt

2020-Current year OA Pubs

BACKGROUND: Inflammation and insufficient physical inactivity contribute to individual-level risk of disease recurrence and death in stage III colon cancer. The extent to which increased inflammatory risk can be offset by sufficient physical activity remains unknown.

METHODS: This cohort study was nested within the Cancer and Leukemia Group B (now part of the Alliance for Clinical Trials in Oncology) and Southwest Oncology Group randomized trial. Inflammatory burden was quantified by high-sensitivity C-reactive protein, interleukin-6, and soluble tumor necrosis factor-α receptor 2 after recovery from tumor resection. Physical activity was measured during and after postoperative chemotherapy. The primary endpoint was disease-free …

Cxcr3-Cxcl11 Signaling Restricts Angiogenesis And Promotes Pericyte Recruitment, Jihui Lee, Megan E. Goeckel, Allison Levitas, Sarah Colijn, Jimann Shin, Anna Hindes, Geonyoung Mun, Zarek Burton, Bharadwaj Chintalapati, Ying Yin, Javier Abello, Lilianna Solnica-Krezel, Amber N. Stratman

2020-Current year OA Pubs

BACKGROUND: Endothelial cell (EC)-pericyte interactions are known to remodel in response to hemodynamic forces; yet there is a lack of mechanistic understanding of the signaling pathways that underlie these events. Here, we have identified a novel signaling network regulated by blood flow in ECs-the chemokine receptor CXCR3 (CXC motif chemokine receptor 3) and one of its ligands, CXCL11 (CXC motif chemokine ligand 11)-that delimits EC angiogenic potential and promotes pericyte recruitment to ECs during development.

METHODS: We investigated the role of CXCR3 on vascular development using both 2- and 3-dimensional in vitro assays, to study EC-pericyte interactions and EC behavioral …

Dysfunctional Alpha Modulation As A Mechanism Of Working Memory Impairment In Serious Mental Illness, Molly A Erickson, Megan A Boudewyn, Kurt Winsler, Charlotte Li, Deanna M Barch, Cameron S Carter, Michael J Frank, James M Gold, Angus W Macdonald 3rd, John D Ragland, Steven M Silverstein, Andrew Yonelinas, Steven J Luck

2020-Current year OA Pubs

BACKGROUND: People with psychosis and mood disorders experience disruptions in working memory; however, the underlying mechanism remains unknown. We focused on 2 potential mechanisms: poor attentional engagement should be associated with elevated levels of prestimulus alpha-band activity within the electroencephalogram (EEG), whereas impaired working memory encoding should be associated with reduced poststimulus alpha suppression.

METHODS: We collected EEG data from 68 people with schizophrenia, 43 people with bipolar disorder with a history of psychosis, 53 people with major depressive disorder, and 90 healthy comparison subjects while they completed a spatial working memory task. We quantified attention lapsing, memory precision, and …

The Effects Of Mosaicism On Biological And Clinical Markers Of Alzheimer's Disease In Adults With Down Syndrome, Laura Xicota, Rachel L Henson, Beau Ances, Et Al.

2020-Current year OA Pubs

BACKGROUND: Individuals with Down syndrome (DS) are at high risk of early-onset Alzheimer's disease (AD); yet, some 20 percent do not develop any signs of dementia until after 65 years or in their lifetime. Mosaicism could contribute to this phenotypic variation, where some disomic cells could lead to lower levels of gene products from chromosome 21.

METHODS: We examined longitudinal neuropsychological and biomarker data from two large studies of DS: the Alzheimer Biomarker Consortium-Down syndrome study (ABC-DS) (n = 357); and a legacy study (n = 468). We assessed mosaicism using karyotyping or GWAS data. Participants had data on plasma …