Digital Commons Network^™

Supporting Second-Year College Students In The Murky Middle, Alisha L. Kimble

University of the Pacific Theses and Dissertations

This study articulates the needs and expectations of an intersectional population of undergraduate college students: second-year students in the murky middle. Nearly half of all student dropouts occur after the first year of enrollment, with more than 45% occurring by mid-performing students. Despite this, institutions, like researchers, do not readily focus on the retention of this population of students; a Noel Levitz study (2013) found a disparity in the prevalence of retention practices for first-year students (94%-98%) and second-year students (20%-29%). This general qualitative study utilized a semi-structured interview protocol with nine participants to gather information about the participants’ needs …

The Development Of A Children’S Book Designed To Use Bibliotherapy And Mindfulness Skills To Promote Interoception In Young Children With Insecure Attachment As A Result Of Adverse Childhood Experiences, Zenaida Agramonte

University of the Pacific Theses and Dissertations

One third of children in the United States have experienced trauma known in the literature as Adverse Childhood Experiences (ACEs). The long-term outcomes of ACEs have a higher likelihood of reducing interoceptive awareness—the ability to sense internal body signals like heart rate, hunger, pain, and emotions. Research suggests that interventions, such as mindfulness and attachment therapies are useful for increasing interoceptive awareness, regulating emotions, and fostering secure attachment in adults. However, apart from attachment, interventions are lacking for young children. Bibliotherapy is one such intervention designed for young children which potentially fosters secure attachment between child and adult storytellers and …

Unrestrained Voices: A Qualitative Thematic Analysis On Formerly Incarcerated Trans People’S Perceptions Of Safety During Incarceration, James Anthoney Crawford

Theses and Dissertations

Heightened risks of violence, discrimination, and insufficient institutional protections mark the experiences of incarcerated trans individuals. This qualitative thematic analysis investigated the perceptions of safety among formerly incarcerated trans people within U.S. correctional facilities. Using qualitative research methods, the study gathered firsthand accounts of physical and sexual assault, examined institutional responses to reported incidents, and assessed the effectiveness of the Prison Rape Elimination Act of 2003 in addressing the unique vulnerabilities of trans inmates. Data collection involved oral history transcript analysis, which was analyzed through thematic coding to identify patterns of institutional neglect, inadequate training of correctional staff, and systemic …

Evaluation Of The Maneuverability Of An 85m Fishing Trawler (Focusing On Dynamic Stability), Chun-Ki Lee, Su-Hyung Kim

Journal of Marine Science and Technology–Taiwan

Most fishing vessels are less than 100 meters in length, so IMO maneuverability standards do not apply. As a result, studies on the maneuverability of fishing vessels are considerably fewer compared to those on merchant ships. However, with technological advancements, the size of fishing vessels continues to grow, and as more fishermen are on board, accidents could lead to fatal casualties. In response, the authors determined that research on the maneuverability of fishing vessels is urgently needed. Thus, the authors conducted a maneuverability evaluation on a fisheries training vessel with the hull shape of a fishing trawler, 85 meters in …

A Hybrid Image Filtering Approach For Improving Edge Detection Of Riverbed Particles With Complex Textures, Po-Wei Lin, Hsun-Chuan Chan

Journal of Marine Science and Technology–Taiwan

The distribution of particle size in gravel-bed rivers affects the flow condition, sediment transport, and river morphology. However, conventional particle size analysis is laborious and time-consuming. To enhance the efficiency of particle size analysis, image-based methods have been widely explored, but complex particle textures increase the difficulty in identifying particle edges during image analysis. This study develops a filtering approach based on the rolling guidance filter and leverages the differences in grayscale gradients between particle edges and textures to design a guidance image tailored for the rolling guidance filter. This design enables the filter to preserve particle edges while smoothing …

Comparison Of Canopy Materials To Improve The Performance Of Sea Anchors Used For Fishing Operations, Namgu Kim, Su-Hyung Kim, Yoo-Won Lee, Kyung-Jin Ryu

Journal of Marine Science and Technology–Taiwan

Sea anchors used for fishing operations help improve catch rates by stabilizing vessel drift speeds to match tidal or ocean currents. The underwater resistance experienced by a sea anchor's canopy significantly impacts its performance, yet there has been limited research on canopy materials. This study investigates how different canopy materials can enhance sea anchor performance. Specifically, we tested sea anchors made from three fabrics: the currently used polyamide (PA) material, PA material with increased yarn density in the weft direction, and polyester (PES). Using Korean national standards, we compared the yarn density, weight, water absorption capacity, drying rate, air permeability, …

Research On Ship Track Prediction Based On Ipso-Cnn, Xiangen Bai, Nuo Chen, Xiaofeng Xu

Journal of Marine Science and Technology–Taiwan

With the rapid development of the global economy, international imports and exports have become increasingly important. Timely and effective tracking and prediction of ship trajectories are important in the face of complex maritime traffic. Based on AIS data, this study establishes a ship trajectory prediction model combining improved particle swarm optimization (IPSO) and a convolutional neural network (CNN) that uses the ship's historical navigation trajectory data to predict the future navigation trajectory. The historical ship trajectory data of the Port of Ningbo-Zhoushan were selected for the experiment, and the IPSO-CNN model experiment results were compared with those of other models. …

Using Secreted Biomarkers In The Development Of The Detection Of Advanced Cancer Screening System, Elaine Vanterpool

Student Posters

An estimated 20 million people globally develop cancer every year. Furthermore, over 9.7 million people die from cancer. The best prognosis of cancer occurs when detected early. Cancer, in its early stages, usually does not display clinical symptoms and is usually not detectable by symptoms and is diagnosed later. The goal of the D.A.C.S. is to provide a screen that can detect cancer. It is hypothesized that developing a cancer detection system/technology, named D.A.C.S. (Detection of Advanced Cancer Screening) system, can help with early cancer detection, while still being affordable for the general public.

Mutation In Rpl10 Disrupts Ribosomal Function And Contributes To Autism Spectrum Disorder, Elaine Vanterpool, Paula Ramirez-Mejia

Student Posters

Autism Spectrum Disorder (ASD) is a neurodevelopmental disorder characterized by difficulties in social communication and restricted, repetitive behaviors, interests, or activities. A study in 2020 estimated that ASD affects 2.8% of children in the United States (NIMH). The RPL10 gene, encodes the Ribosomal protein L10, has been implicated in ASD and plays a crucial role in protein synthesis and neuronal development, contributing to a protein essential for assembling the large ribosomal subunit. This study investigates how variations in PRL10 (Ribosomal Protein L10) can contribute to ASD.

Eed Gene Variants And Irritable Bowel Syndrome: A Genetic Approach To Understanding Ibs, Elaine Vanterpool, Ted Howard

Student Posters

Irritable Bowel Syndrome is a disease linked with the gastrointestinal system and seen to cause bloating, abdominal pain, and harmful alterations in the digestive system. Its cause is complex and is known to have both environmental and genetic factors. Recent studies have shown that IBS occurs due to genetic variations, which leads to the pathogenesis of IBS. One gene, the EED (Embryonic Ectoderm Development) gene has been involved in various biological processes, particularly gastrointestinal functions. The purpose of this study is to explore the potential relationship between the EED gene and IBS.

Analyzing The Inhibition Of Chemical Compounds On Collagenase In P. Aeruginosa, Elaine Vanterpool, Marielle Cooper, Kiara Cameron

Student Posters

Pseudomonas aeruginosa is an opportunistic pathogen that poses significant challenges in clinical treatment due to its production of collagenase. This bacterium can cause several infections including pneumonia, meningitis, septicemia, and a host of other diseases. Collagenase acts as a key virulence factor by breaking down collagen in the host’s extracellular matrix, allowing bacteria to invade tissues. This study hypothesized that the effects of cell secreted collagenase would be inhibited by metronidazole, vanillin, and silver nanoparticles to reduce the pathogenicity of Ps. aeruginosa related infections.

Analysis Of Cys294arg Mutation In Cs1 Associated With Periodontal Ehlers-Danlos Syndrome & Collagen Degradation, Elaine Vanterpool, Amy Aboki

Student Posters

C1s enzyme plays a crucial role in the immune system so that the body can fight infection and repair damaged tissues. However, if it is not working properly, it will do more harm than good. This is shown in the case of periodontal Ehlers-Danlos syndrome (pEDS), a rare genetic disorder whereby C1s breaks down collagen I, a protein that gives structure and strength to connective tissues. Severe gum disease, loose teeth and premature teeth is a result of this. The purpose of this study is to identify and analyze the pathogenicity of C1s mutations and association in pEDS.

Impact Of Feeding Different Fat Sources And Levels Of Vitamin E Isoforms To Heavy Slaughter Weight (150 Kg) Pigs: Ii. Belly And Bacon Quality, Marlee Kelley, Ding Wang, Ana Paula A.A. Salim, Merlin D. Lindemann, Gregg Rentfrow, Surendranath P. Suman

Animal and Food Sciences Faculty Publications

Two independent experiments were performed to evaluate the effect of dietary fat sources and vitamin E supplementation on the characteristics of belly and bacon from heavy slaughter weights (150 kg) pigs. In experiment 1, 64 individually fed pigs (32 barrows and 32 gilts) were randomly assigned to 1 of the 8 dietary treatments in a 4 × 2 factorial arrangement. Four fat sources included cornstarch (CS), tallow (TW), corn oil (CO), and coconut oil (CN). Vitamin E supplementation included alpha-tocopheryl acetate (ATA) at 11 and 200 ppm. In experiment 2, individually fed pigs (n = 72; 36 barrows, 36 gilts) …

Impact Of Feeding Different Fat Sources And Levels Of Vitamin E Isoforms To Heavy Slaughter Weight (150 Kg) Pigs: I. Carcass Characteristics And Fresh Pork Quality, Marlee Kelley, Ding Wang, Gregg Rentfrow, Merlin D. Lindemann, Ana Paula A.A. Salim, Surendranath P. Suman

Animal and Food Sciences Faculty Publications

The objective of this study was to evaluate the effect of supplementing α-tocopheryl-acetate (ATA) and γ-tocopherol (GT) vitamin E isoforms with corn oil (CO) and tallow (TW) on carcass characteristics and meat quality characteristics of pigs grown to heavy weights (150 kg). Individually fed pigs (n = 72; 36 barrows, 36 gilts) were randomly assigned to 12 dietary treatments in a 2 × 6 factorial arrangement. Fat treatments were 5% TW and 5% CO. The vitamin E treatments included 4 levels of ATA (11, 40, 100, and 200 ppm) and 2 levels of mixed tocopherols (primarily GT; 40 and 100 …

Wet Aging For 21 Days Improves Tenderness Of Beef Biceps Femoris Muscle Without Affecting Color Stability, Ana Paula A.A. Salim, Mahesh N. Nair, Yifei Wang, Anna C.V.C.S. Canto, Gregg Rentfrow, Surendranath P. Suman

Animal and Food Sciences Faculty Publications

Beef whole-muscle cuts containing biceps femoris (BF) exhibit inferior tenderness compared to cuts from the ribs and loins. The BF is a sizeable muscle in beef round, and enhancing tenderness of BF may increase the value of beef carcasses. While wet aging for 21 d improves beef tenderness, it can compromise color. Therefore, we evaluated the effects of wet aging on color and tenderness of beef BF to identify an optimal aging duration for these quality traits. The BF muscles were collected 24 h postmortem from 8 beef carcasses (n = 8), divided into equal sections, vacuum packaged, and aged …

Automated Sponge Segmentation With Mask R-Cnn On Arms Plate Images For Reef Monitoring, Mrunali Abhijit Thokadiwala

Master's Projects

Climate change-driven ocean warming and acidification are disrupting the ecological balance of coral reefs. Notably, these oceanic conditions are undermining coral health and accelerating their decline which is favoring some sponge species in outcompeting them for dominance. Although functional, these altered reefs destabilize the reef architecture, hinder nutrient cycling, and support fewer marine species. Thus, monitoring the growth and abundance of various sponges and understanding their roles at different stages of ecological succession in coral reefs is vital. Autonomous reef monitoring structures (ARMS) are often used for this purpose, but manual taxonomic analysis using their images is time-consuming, inconsistent and …

Evorgcn: Harnessing Esm-2 Evolutionary Embeddings With Relational Gcns For High-Fidelity Protein-Protein Interaction Prediction, Mohit Kunder

Master's Projects

Accurately predicting protein-protein interactions (PPIs) is essential for understanding cellular function and advancing biomedical discovery. We model PPIs as graphs, where nodes represent proteins and edges denote interactions. Using interaction data from the STRING database, we use two samples of it, namely the benchmark datasets—SH27K and SH148K—filtered by confidence score and annotated by interaction mode (multiple relations). In this project, we present EvoRGCN, a graph-based machine learning framework for PPI prediction that integrates both sequence-level (ESM-2 embeddings) and network-level information. We incorporate various Graph Neural Network architectures, including Graph Convolutional Networks, Graph Attention Networks, and Relational Graph Convolutional Networks. Our …

Variations Of Hex Bar Deadlifts On Post-Activation Performance Enhancement In Collegiate Baseball Athletes, Samuel Sanders

College of Graduate Studies: Theses & Dissertations

Single-session resistance priming protocols are used by strength and conditioning coaches to acutely improve neuromuscular mechanisms that are beneficial to athletic performance. This study aimed to examine if a concentric-only hex bar deadlift (CHBDL) would produce a similar post-activation performance enhancement (PAPE) effect as a full-range-of-motion hex bar deadlift (THBDL) and mitigate perceived measures of fatigue and soreness in collegiate athletes. 19 NCAA Division I baseball athletes completed the study. A repeated measures design with randomized assignment and counterbalanced order was utilized. Over two weeks, the CHBDL and THBDL were added into a typical priming protocol used by the team’s …

Digital Modeling Of Temperature-Dependent Processes In Industrial Wastewater: Advancing Ultimate Oxygen Demand Prediction For Treatment Optimization, Fatima Iqbal

College of Graduate Studies: Theses & Dissertations

The pulp and paper industry is the third-largest consumer of freshwater globally and faces mounting pressure to optimize water usage and minimize environmental impact. Aerated stabilization basins are extensively utilized in the pulp and paper industry and play a crucial role in treating wastewater from these operations. The existing management practices fail to effectively optimize treatment processes due to the prolonged time required for testing key quality parameters. The utilization of models developed for treatment facilities presents a viable solution; however, existing open-source models often fall short in accurately predicting treatment efficiency across varying conditions and lack comprehensive accounting of …

Investigating The Role And Expression Of Aquaporin 10 Paralogs In Spiny Dogfish (Squalus Acanthias), Esosa Omoregie

College of Graduate Studies: Theses & Dissertations

Aquaporins (AQPs) are integral membrane proteins that facilitate the selective transport of water and small solutes across cell membranes, playing essential roles in maintaining osmotic balance in vertebrates. Among them, aquaglyceroporins such as AQP10 are capable of transporting water, glycerol, and urea, contributing to osmoregulatory and metabolic processes. This study investigated the expression, localization, and potential physiological roles of two AQP10 paralogs, AQP10C1 and AQP10C2, in the spiny dogfish (Squalus acanthias), a marine elasmobranch that maintains osmotic equilibrium through urea retention and ion regulation. Using RT-PCR, quantitative PCR, Western blotting and immunohistochemistry the study identified tissue-specific expression patterns of …

Assessing The Impact Of Environmental Health Risk Communication On Cancer Screening Intentions Among Private Well Owners In Rural Communities, Victoria A. Clower

College of Graduate Studies: Theses & Dissertations

Background: Cancer is a leading cause of death in Georgia, with rising incidence in rural counties where many residents rely on unregulated private wells. These wells may contain contaminants such as radon, lead, nitrate, and arsenic, all linked to increased cancer risk. Limited research has explored how environmental exposure awareness influences cancer prevention behaviors such as screening. Guided by the Champion Health Belief Model, this study examined psychosocial and environmental predictors of screening intent among private well owners. Methods: Well Aware was an 11-week quasi-experimental study among 60 private well owners in southeast Georgia. Participants who attended educational listening sessions …

Determination Of Structural Factors Contributing To Protection Of Zinc Fingers In Estrogen Receptor Α Through Molecular Dynamic Simulations, Patricia B. Lutz, Wesley R. Coombs, Craig A. Bayse

Chemistry & Biochemistry Faculty Publications

The ERα transcription factor that induces tumor growth is a potential target for breast cancer treatment. Each monomer of the ERα DNA-binding domain (ERαDBD) homodimer has two conserved (Cys)₄-type zinc fingers, ZF1 (N-terminal) and ZF2 (C-terminal). Electrophilic agents release Zn²⁺ by oxidizing the coordinating Cys of the more labile ZF2 to inhibit dimerization and DNA binding. Microsecond-length molecular dynamics (MD) simulations show that greater flexibility of ZF2 in the ERαDBD monomer leaves its Cys more solvent accessible and less shielded from electrophilic attack by sulfur-centered hydrogen bonds than ZF1 which is buried in the protein. In the …

Phytochemical Analysis, Antioxidant, And Antibacterial Properties Of Partition Fractions Of Adansonia Digitata And Annona Muricata Extracts Using Chloroform, Ethyl Acetate, Ethanol, And Aqueous Solvent Systems, Fagbohun Oyenike Bushirat, Hassan Abdusalam Adewuyi, Sakariyau Adio Waheed, Maryam Nana Musa, Timothy God-Giveth Olusegun, Ayomide Babatunde Ishola, Agumage Idoko, Adeola Victor Kolawole, Adesanmi Adefunmilayo Oluwatuyi, Sarah Ngozi Agwasim

Chemistry & Biochemistry Faculty Publications

Adansonia digitata and Annona muricata are traditionally used medicinal plants with reported pharmacological properties. In this study, we aimed to elucidate the phytochemical composition, antioxidant activity, and antibacterial properties of partition fractions of Adansonia digitata and Annona muricata extracts obtained using chloroform, ethyl acetate, ethanol, and aqueous solvent systems. The plant extracts were successively partitioned using chloroform, ethyl acetate, ethanol, and aqueous solvent systems. Phytochemical analysis was performed using standard methods. Antioxidant activity was evaluated using FRAP and DPPH assays. Antibacterial activity was assessed using agar well diffusion and MIC determination. Phytochemical analysis revealed the presence of alkaloids (10.2-15.6%), flavonoids …

The Importance Of Solution Studies For The Structural Characterization Of The Enterovirus 5' Cloverleaf, Morgan G. Daniels, Meagan E. Werner, Xiaobing Zuo, Steven M. Pascal

Chemistry & Biochemistry Faculty Publications

Enteroviruses initiate genomic replication via a highly conserved mechanism that is controlled by an RNA platform, also known as the 5' cloverleaf (5'CL). Here, we present a biophysical analysis of the 5'CL conformation of three enterovirus serotypes under various ionic conditions, utilizing CD spectroscopy, size-exclusion chromatography, and small-angle X-ray scattering. In general, a tendency toward a smaller monomeric hydrodynamic radius in the presence of salts was observed, but the exact structural signature of each 5'CL varied depending upon the serotype. Rhinovirus B14 (RVB14) exhibited at least two monomeric conformations and a low propensity for dimerization, while poliovirus 1 (PV1) showed …

Metal-Organic Thin Film Coated On Optical Fiber, Nahideh Salehifar

Doctoral Dissertations

This dissertation explores the development of metal-organic framework (MOF)-based optical fiber sensors for detecting volatile organic compounds (VOCs) at low concentrations (parts-per-billion to parts-per-million). In the first part of the study, theoretical calculations were performed using effective medium approximation (EMA) models, including Lorentz–Lorentz, Maxwell–Garnett, and Bruggeman equations, to predict the refractive index changes of MOFs upon gas adsorption. These models were applied to MOFs such as ZIF-7, ZIF-8, ZIF-90, MIL-101(Cr), and HKUST-1 to evaluate their potential for gas sensing.

In the second part of the dissertation, experimental work was conducted to validate the theoretical predictions. MOF-coated optical fibers were fabricated …

Design And Synthesis Of Organocatalyts For Efficient Decontamination Of Organophosphate-Based Nerve Agents And Pesticides, Emmanuel Kingsley Darkwah

Doctoral Dissertations

Exposure to organophosphate-based nerve agents and pesticides poses significant health and security threats to civilians, soldiers, and first responders. Despite extensive efforts to develop chemical detoxification agents for use in topical applications on exposed skin surfaces and for intravenous injections, there remains an unmet need for effective, non-hazardous decontaminating agents. The current state-of-the-art decontaminating agent, Dekon-139 (2,3-butanedione oxime, potassium salt), exhibits adverse effects when applied to the skin.

In this study, we designed and synthesized pharmaceutically relevant aminoguanidine-derived aldimines that are relatively non-toxic and substantially more effective at decontaminating nerve agents and pesticides compared to existing agents, and they act …

Design Of Real-Time And Energy-Efficient Driver Assist Systems Using Electroencephalogram And Neuromorphic Computing, Nathan Alan Lutes

Doctoral Dissertations

Despite the technological breakthroughs in advanced driver assist systems, distracted driving persists as a major challenge to roadway safety. This investigation advances the body of knowledge towards a solution by developing an individualized driver-state detection method using electroencephalogram (EEG) and neuromorphic computing to provide a less invasive and more energy efficient ADAS solution. It furthermore explores the changes in brain functional connectivity under distracted conditions to better understand brain state information that could be used for neuro-feedback intervention systems. The first contribution introduces the concept of using Convolutional Spiking Neural Networks (CSNNs) for recognition of patterns with movement-intention predictive power …

Novel Nano-Formulations Based On Flash Nanoprecipitation For Ocular Drug Delivery, Lin Qi

Doctoral Dissertations

Effective ocular drug delivery has always been a challenge for clinical and research. Although many nanotechnology-based formulations have been developed and showed great potential in ocular drug delivery, this is far from enough to meet clinical requirements. These studies aimed at the design and synthesis of novel nanoparticles using multi-inlet vortex mixer (MIVM) to improve ocular drug delivery efficiency. The first project involves packaging two different anti-glaucoma drugs, brimonidine (BM) and betaxolol (BX), into solid drug nanoparticles (SDNs) by MIVM, which can achieve both functions, reducing aqueous humor production and promoting aqueous humor efflux. The studies demonstrate that the SDNs …

Topics On Ai Fairness Preferences In Kidney Transplantation, Mukund Telukunta

Doctoral Dissertations

Modern kidney transplantation incorporates artificial intelligence (AI) decision-support systems which exhibit social discrimination due to biases inherited from training data. Although researchers have proposed various group-based fairness notions to assess biases in AI, it remains uncertain which criterion is most suitable for evaluating biases in such complex healthcare systems. This dissertation explores human perception of fairness to identify the most appropriate fairness criterion for assessing AI tools in kidney transplantation, focusing on the preferences of non-expert (e.g. public, patients) stakeholders. The study examines two distinct AI systems employed in kidney transplantation: a classification model and a regression model. Human subject …

Enhanced Optimization Of Mass Transfer For Carbon Capture And Wastewater Remediation In Algal Systems Through Algorithmic And Bioprocessing Techniques, Peter Ofuje Obidi

Doctoral Dissertations

The scalability and industrial deployment of algal cultivation systems are limited by suboptimal mass transfer, constraining their effectiveness in carbon capture and wastewater remediation. This research investigated these challenges through integrated optimization methodologies that combine algorithmic frameworks with enhanced bioprocessing techniques to enhance efficiency, economy, and scalability. A System-of-Systems (SoS) meta-architecture was developed using genetic algorithms and fuzzy assessor functions to demonstrate a pathway toward cost reduction. Rigorous mechanical and chemical characterizations were quantitatively analyzed to reveal existing optimization strategies and further evaluated the best strategies to use in enhancing mass transfer for improved biomass yield. The work also integrates …