Digital Commons Network^™

Ecological Correlates Of Extinction Risk And Persistence Of Direct-Developing Stream-Dwelling Frogs In Mesoamerica, Hector Zumbado-Ulate, Kelsey Neam, Adrián García-Rodríguez, Leticia Ochoa-Ochoa, Gerardo Chaves, Jonathan E. Kolby, Sofía Granados-Martínez, Andreas Hertz, Federico Bolaños, Daniel Ariano-Sánchez, Robert Puschendorf, Catherine L. Searle

School of Biological and Marine Sciences

No abstract provided.

Synthetic Microplastic Abundance And Composition Along A Longitudinal Gradient Traversing The Subtropical Gyre In The North Atlantic Ocean, Winnie Courtene-Jones, Simon Van Gennip, Juliette Penicaud, Emily Penn, Richard C. Thompson

School of Biological and Marine Sciences

Plastic pollution has been reported in the North Atlantic Ocean since the 1970s, yet limited data over subsequent decades pose challenges when assessing spatio-temporal trends in relation to global leakages and intervention strategies. This study quantified microplastics within the upper ocean along a longitudinal transect of the North Atlantic and its subtropical gyre. Microplastics were sampled from surface and subsurface (−25 m) water using a manta trawl and NIKSIN bottle respectively. The surface water polymer community varied significantly between geographic positions (‘inshore’, ‘gyre’, ‘open ocean’), and was significantly influenced by fragment quantity. Compared to other positions, the North Atlantic gyre …

Long‐Term Effects Of Artificial Nighttime Lighting And Trophic Complexity On Plant Biomass And Foliar Carbon And Nitrogen In A Grassland Community, Vinka Anic, Kevin J. Gaston, Thomas W. Davies, Jonathan Bennie

School of Biological and Marine Sciences

No abstract provided.

Human Affinity For Rivers, Yichu Wang, Alistair G.L. Borthwick, Jinren Ni

School of Engineering, Computing and Mathematics

Human civilization prospers along rivers worldwide. Here, we investigated human–river relations by revealing the linkage between water and habitability for human settlements, and socioeconomic and cultural development across China. We found that human–water co-occurrence relationships are self-similar over sub-basins for different scales of stream-order in the river networks. According to the earlier complete demographic census conducted during the reign of the Qing Dynasty (1776), there has been a general tendency for inhabitants to live close to rivers, characterized by population density associated with habitability cored by water under a near-natural state, which still remains to date (2019) even after long-term …

Synchronized Seed Germination And Seedling Growth Of Black Cumin, Mohammed Elsayed El-Mahrouk, Mossad Khairy Maamoun, Yaser Hassan Dewir, Antar Nasr El-Banna, Hail Z. Rihan, Ahmed Salamh, Ahmed A. Al-Aizari, Michael P. Fuller

School of Biological and Marine Sciences

Black cumin (Nigella sativa) is an important medicinal plant in the pharmacological industry. It is cultivated on a commercial scale, but its seeds have a slow, unsynchronized germination rate. Enhancing seed germination is crucial for improving the production of black cumin. The influence of presowing treatments [gibberellic acid (GA3), potassium nitrate, salicylic acid, and stratification at 4 °C] on seed germination was assessed. Seed germination was determined daily for 30 days, and germination parameters, including final germination percentage (FGP), corrected germination rate, number of days to reach 50% of FGP, and seedling length vigor index, were evaluated. Endogenous contents of …

The Need, Opportunities, And Challenges For Creating A Standardized Framework For Marine Restoration Monitoring And Reporting, Aaron M. Eger, Hannah S. Earp, Kim Friedman, Yasmine Gatt, Valerie Hagger, Boze Hancock, Ratchanee Kaewsrikhaw, Elizabeth Mcleod, Abigail Mary Moore, Holly J. Niner, Frida Razafinaivo, Ana I. Sousa, Milica Stankovic, Thomas A. Worthington, Elisa Bayraktarov, Megan Saunders, Adriana Vergés, Simon Reeves

School of Biological and Marine Sciences

Marine ecosystems have been used, impacted by, and managed by human populations for millennia. As ecosystem degradation has been a common outcome of these activities, marine management increasingly considers ecosystem restoration. Currently, there is no coherent data recording format or framework for marine restoration projects. As a result, data are inconsistently recorded and it is difficult to universally track progress, assess restoration's global effectiveness, reduce reporting bias, collect a holistic suite of metrics, and share information. Barriers to developing a unified system for reporting marine restoration outcomes include: reaching agreement on a framework that meets the needs of all users, …

Fast And Accurate Mapping Of Fine Scale Abundance Of A Vme In The Deep Sea With Computer Vision, Nils Piechaud, Kerry L. Howell

School of Biological and Marine Sciences

No abstract provided.

Loot Boxes And Problem Gambling: Investigating The “Gateway Hypothesis”, Stuart Gordon Spicer, Chris Fullwood, James Close, Laura Louise Nicklin, J Lloyd, H Lloyd

Peninsula Medical School

No abstract provided.

Comment On: Disease Gene Identification Strategies For Exome Sequencing By Gilissen Et Al. 2012, Julia Baptista

Peninsula Medical School

No abstract provided.

Individual And Collective Behaviour Of Fish Subject To Differing Risk-Level Treatments With A Sympatric Predator, Alexander D.M. Wilson, Timothy M. Schaerf, Ashley J.W. Ward

School of Biological and Marine Sciences

The ability to adapt behaviour according to context is vital to the success of many organisms, particularly when it comes to mitigating risk, across time and space, in unpredictable environments. While many studies have examined the role of predation threat in shaping behaviour, very few have quantitatively investigated prey responses across different elements of perceived risk or ecological contexts. Here, we present a detailed analysis of how mosquitofish (Gambusia holbrooki) adapt their individual and collective behaviour in five experimental treatments designed to replicate different core elements of predator threat. As risk increased, within and across treatments, fish decreased movements across …

An Evaluation Of The Seagrass Walk, An Immersive Living Arts Piece Installed At The National Marine Aquarium, Plymouth, Uk. A Report Funded By The Green Minds Project, S Rees, A Morgan, C Parrott

School of Biological and Marine Sciences

No abstract provided.

Borrowed Capital And Factors Affecting Its Utilization Among Rice Farmers In The Province Of Albay, Philippines, Elmer A. Lorenzana

Journal of Public Affairs and Development

Agricultural credit programs provide opportunities for farmers to acquire the necessary farm inputs and apply appropriate technologies. However, it remains a challenge for farmers to use the credit for what it was intended for. This study aimed to measure the factors affecting the utilization of borrowed capital of 233 randomly selected rice farmers from the province of Albay using binary logit as its analytical procedure. The factors influencing the utilization of borrowed capital are the type of the optimization behavior of the farmers, sex, family size, and farm size. The output maximizers and the male farmers have a higher probability …

Updates On Hydroxychloroquine In Prevention And Treatment Of Covid-19, Heather Johnson

All Publications

No abstract provided.

Sidebar: Observations Of Declining Primary Productivity In The Western Bering Strait, Karen E. Frey, Jaclyn Clement Kinney, Larry V. Stock, Robert Osinski

Geography

No abstract provided.

Radiation Of Meningioma Dural Tail May Not Improve Tumor Control Rates., Keenan Piper, Siyuan Yu, Mohammad Taghvaei, Christian Fernandez, Nikolaos Mouchtouris, Rupert D Smit, Clifford Yudkoff, Sarah Collopy, Maikerly Reyes, Pascal Lavergne, Michael Karsy, Giyarpuram Prashant, Wenyin Shi, James J. Evans

Student Papers, Posters & Projects

Introduction: Dural tails are thickened contrast-enhancing portions of dura associated with some meningiomas. Prior studies have demonstrated the presence of tumor cells within the dural tail, however their inclusion in radiation treatment fields remains controversial. We evaluated the role of including the dural tail when treating a meningioma with stereotactic radiation and the impact on tumor recurrence.

Methods: This is a retrospective, single-institution, cohort study of patients with intracranial World Health Organization (WHO) grade 1 meningioma and identified dural tail who were treated with stereotactic radiosurgery (SRS) or fractionated stereotactic radiotherapy (FSRT) from January 2012 to December 2018. SRS and …

Purposeful Use Of Poisonous Plants, James P. Smith Jr

Botanical Studies

No abstract provided.

Two Hemlocks, James P. Smith Jr

Botanical Studies

No abstract provided.

Richard Evans Schultes, James P. Smith Jr

Botanical Studies

No abstract provided.

An Annotated List Of The Poisonous And Injurious Vascular Plants Of The United States, James P. Smith Jr

Botanical Studies

No abstract provided.

Mechanically Injurious Plants, James P. Smith Jr

Botanical Studies

No abstract provided.

Poisonous Plants: A Glossary Of Commonly Used Terms, James P. Smith Jr

Botanical Studies

No abstract provided.

Sustainability And Justice: Challenges And Opportunities For An Open Stem Education, Carrie Diaz Eaton, Kaitlin Bonner, Karen Cangialosi, Bryan Dewsbury, Maggie Diamond-Stanic, Jason Douma, Michelle Smith, Robin Taylor, Jeremy Wojdak, Krystie Wilfong

All Faculty Scholarship

Open educational resources, or OER, are teaching materials that reside in the public do-main and are available under an open license. While the creation of high-quality materials and cyberinfrastructure to share these resources is important, OER are much more than static resource repositories. Vibrant OER communities function as collaboration hubs and often include librarians, instructional technologists, instructors, education researchers, funders, open-source software developers, and college administrators. Together, these in-dividuals work as a community to respond to changes in the education landscape, support student learning impacts both in terms of cost savings and student retention, and solve issues related to broadly …

Can We Bridge The Gap? Mathematics And The Life Sciences, Part 1–Calculus-Based Modules, Programs, Curricula, Raina Robeva, Timothy D. Comar, Carrie Diaz Eaton

All Faculty Scholarship

This editorial serves as an introduction to Part 1 of the Special Issue Mathematics and the Life Sciences–a collection of articles showcasing ideas, examples, pedagogical frameworks, and curricular materials aiming to bridge the stubbornly persistent gap at the undergraduate level between the mathematical and the life sciences. The special issue features authors from public and private institutions of diverse types, sizes, and geographic locations: community colleges, liberal arts colleges, and research-oriented universities. We hope this special issue will serve as a resource to faculty who seek to make changes to their own course(s) or initiate curriculum reforms at their own …

Can We Bridge The Gap? Mathematics And The Life Sciences: Part 2–Discrete Models, Statistics, Co-Curricular Opportunities, Raina Robeva, Timothy D. Comar, Carrie Diaz Eaton

All Faculty Scholarship

This editorial serves as an introduction to Part 2 of the Special Issue Mathematics and the Life Sciences–a collection of articles showcasing ideas, examples, pedagogical frameworks, and curricular materials aiming to bridge the stubbornly persistent gap at the undergraduate level between the mathematical and the life sciences. The special issue features authors from public and private institutions of diverse types, sizes, and geographic locations: community colleges, liberal arts colleges, and research-oriented universities. We hope this special issue will serve as a resource to faculty who seek to make changes to their own course(s) or initiate curriculum reforms at their own …

Teaching Machine Learning In The Context Of Critical Quantitative Information Literacy, Carrie Diaz Eaton

All Faculty Scholarship

Bates College, is a small liberal arts postsecondary institution in the northeast United States. An information literacy course, Calling Bull, serves as an introductory data science class as well as a prerequisite-free quantitative literacy class. In this context, we spend a week discussing machine learning, with an emphasis on facial recognition algorithms. The emphasis is on the general algorithmic approach, critical inquiry of the process and careful interpretation of results presented in research or decision-making. This module relies on the use of open educational materials, discussion, and careful attention to issues of marginalization and algorithmic justice.

Open Science Via Hubzero: Exploring Five Science Gateways Supporting And Growing Their Open Science Communities, Sandra Gesing, Claire Stirm, Gerhard Klimeck, Lynn Zentner, Su Wang, Braulio Misael Villegas Martinez, Carrie Diaz Eaton, Sam Donovan, Lan Zhao, Carol Song, Et Al.

All Faculty Scholarship

The research landscape applying computational methods has become increasingly interdisciplinary and complex regarding the research computing ecosystem with novel hardware, software, data, and lab instruments. Reproducibility of research results, the usability of tools, and sharing of methods are all crucial for timely collaboration for research and teaching. HUBzero is a widely used science gateway framework designed to support online communities with efficient sharing and publication processes. The paper discusses the growth of communities for the five science gateways nanoHUB, MyGeoHub, QUBEShub & SCORE, CUE4CHNG, and HubICL using the HUBzero Platform to foster open science and tackling education with a diverse …

Exertional Heat Stroke In A Male High School Runner With Disordered Eating: A Disablement Model Case Study, Brittni G. Hoover, Rebecca M. Hirschhorn, Allison B. Smith, Amy F. Hand

Clinical Practice in Athletic Training

A 16-year-old male high school cross country athlete collapsed at the end of an afternoon 5K cross country meet. The patient was unable to stand, and after outwardly displaying confusion and agitation, his coaches sought assistance from the athletic trainers (ATs). The patient consumed one cup of water and a granola bar on the day of the meet. The ambient air temperature was 90°F with 69% humidity. Differential diagnoses included exertional heat stroke (EHS), exertional heat exhaustion, exertional collapse associated with sickle cell trait, heat syncope, dehydration, malnutrition, and hypoglycemia. Approximately 20 minutes passed between activation of the emergency action …

Characteristics Of Sickle Cell Trait Policies And Procedures At Ncaa Division I Institutions, H Parker, B J. Warner, D M. Gallegos, S A. Cage

Clinical Practice in Athletic Training

Context: In 2010, the National Collegiate Athletic Association (NCAA) introduced a proposal addressing sickle cell trait screening. This proposal later became a policy that required student-athletes in their first year of eligibility to provide their institution with accurate information regarding their sickle cell trait status. There does not appear to be a recent study published that has examined the sickle cell trait policies and procedures currently being used by NCAA Division I institutions. The purpose of this study was to describe the characteristics of sickle cell trait policies and procedures at NCAA Division I institutions. Methods: We used a web-based …

Rocky Mountain Forests Are Poised To Recover Following Bark Beetle Outbreaks But With Altered Composition, Kyle C. Rodman, Robert A. Andrus, Amanda R. Carlson, Trevor A. Carter, Teresa B. Chapman, Jonathan D. Coop, Paula J. Fornwalt, Nathan S. Gill, Brian J. Harvey, Ashley E. Hoffman, Katharine C. Kelsey, Dominik Kulakowski, Daniel C. Laughlin, Jenna E. Morris, José F. Negrón, Katherine M. Nigro, Gregory S. Pappas, Miranda D. Redmond, Charles C. Rhoades, Monique E. Rocca, Zoe H. Schapira, Jason S. Sibold, Camille S. Stevens-Rumann, Thomas T. Veblen, Jianmin Wang, Xiaoyang Zhang, Sarah J. Hart

Geography

Amplified by warming temperatures and drought, recent outbreaks of native bark beetles (Curculionidae: Scolytinae) have caused extensive tree mortality throughout Europe and North America. Despite their ubiquitous nature and important effects on ecosystems, forest recovery following such disturbances is poorly understood, particularly across regions with varying abiotic conditions and outbreak effects. To better understand post-outbreak recovery across a topographically complex region, we synthesized data from 16 field studies spanning subalpine forests in the Southern Rocky Mountains, USA. From 1997 to 2019, these forests were heavily affected by outbreaks of three native bark beetle species (Dendroctonus ponderosae, Dendroctonus rufipennis and Dryocoetes …

Raman Spectroscopy Reveals Phenotype Switches In Breast Cancer Metastasis, Santosh Kumar Paidi, Joel Rodriguez Troncoso, Mason G. Harper, Zhenhui Liu, Khue G. Nguyen, Sruthi Ravindranathan, Lisa Rebello, David E. Lee, Jesse D. Ivers, David A. Zaharoff, Narasimhan Rajaram, Ishan Barman

Biomedical Engineering Faculty Publications and Presentations

The accurate analytical characterization of metastatic phenotype at primary tumor diagnosis and its evolution with time are critical for controlling metastatic progression of cancer. Here, we report a label-free optical strategy using Raman spectroscopy and machine learning to identify distinct metastatic phenotypes observed in tumors formed by isogenic murine breast cancer cell lines of progressively increasing metastatic propensities. Methods: We employed the 4T1 isogenic panel of murine breast cancer cells to grow tumors of varying metastatic potential and acquired label-free spectra using a fiber probe-based portable Raman spectroscopy system. We used MCR-ALS and random forests classifiers to identify putative spectral …