Digital Commons Network^™

Chemical Structure Representation Standardization Is Needed To Generalize Metabolite-Pathway Involvement Prediction Across Kegg, Reactome, And Metacyc Knowledgebases, Erik D. Huckvale, Hunter N.B. Moseley

Markey Cancer Center Faculty Publications

Background/Objectives: Due to the utility of knowing the pathway involvement of metabolites detected in biological experiments, knowledgebases such as the Kyoto Encyclopedia of Genes and Genomes (KEGG), Reactome, and MetaCyc have annotated compound entries to specific pathways defined by the knowledgebase. However, these compound-pathway annotations are largely incomplete and are costly to obtain experimentally or curate from published scientific literature. This metabolite-pathway annotation incompleteness problem is amenable to machine learning (ML)-based solutions. But to date, no machine learning model has been trained on all three knowledgebases to maximize its performance and robustness. This may be due to inconsistencies in chemical …

GαQ Is A Heterotrimeric G-Protein Subunit That Directs The Selectivity Of Pparγ-Induced Gene Pathways Toward Energy-Related Processes Rather Than Adiposity, Evelyn A. Bates, Zachary A. Kipp, Wang Hsin Lee, Genesee J. Martinez, Sally N. Pauss, Philipp E. Scherer, Terry D. Hinds

Markey Cancer Center Faculty Publications

Background/Objectives: Signaling mediators of PPARγ influence pathways involved in adipogenesis, lipid storage, inflammation, energy-related processes, and glucose utilization. Recent research indicates that PPARγ coregulators, recruited or released during ligand binding, govern specific gene pathways. It was recently discovered that Gα_q, a heterotrimeric G protein subunit, also signals to PPARγ and may significantly affect adipogenesis and glucose sensitivity. Methods: To explore Gα_q’s role in adipocytes, we generated CRISPR-mediated Gα_q (Gnaq) knockout (Gnaq KO) and scramble control cells from 3T3-L1 preadipocytes. Results: The absence of Gα_q resulted in increased lipid accumulation and elevated serine 273 (but …

In Situ Molecular Organization And Heterogeneity Of The Legionella Dot/Icm T4ss, Przemysław Dutka, Yuxi Liu, Stefano Maggi, Debnath Ghosal, Jue Wang, Prashant P. Damke, Stephen D. Carter, Wei Zhao, Sukhithasri Vijayrajratnam, Joseph P. Vogel, Carrie L. Shaffer, Grant J. Jensen

Markey Cancer Center Faculty Publications

The Dot/Icm type IV secretion system (T4SS) is essential for Legionella pneumophila infection, but its in situ architecture and mechanism remain incompletely understood. Using cryo-electron tomography, we performed subtomogram averaging and 3D classification to resolve structural heterogeneity within the complex. We identified multiple assembly states of the inner membrane complex, including a fully assembled form with a hexamer-of-dimers DotO ATPase and symmetry mismatches between subcomplexes. A composite in situ model revealed a central channel above the inner membrane, likely used for substrate secretion. Imaging of infected macrophages showed T4SSs tethered to host vacuoles and extracellular vesicle release, suggesting additional effector …

Understanding The Role Of Age And U.S. Acculturation Factors On The Relationship Between Allostatic Load And Cancer Mortality Risk In Hispanic Americans, Jessica Amezcua, Valeria Miranda, Melissa Lopez-Pentecost, Jessica Y. Islam, Marlo M. Vernon, Kathleen O’Connor, Justin Xavier Moore

Markey Cancer Center Faculty Publications

Purpose: Despite growing recognition of stress-related health inequities, the role of nativity and acculturation in shaping the relationship between chronic stress and cancer outcomes among Hispanic populations remains poorly understood. The purpose of this study was to examine whether nativity factors (United States (US) citizenship status and length of time residing in the US modify the association between allostatic load (AL), a measure of chronic physiologic stress, and cancer mortality among Hispanic adults. Methods: We performed a prospective cohort analysis using data from the National Health and Nutrition Examination Survey (NHANES) 1999 – 2010, linked to National Death Index with …

Enhancing Postsecondary Outcomes For Students With Emotional And Behavioral Disorders: A Design-Based Mixed Methods Approach To Transition Planning, Kate M. Schrum

Dissertations

Students with emotional and behavioral disorders (EBD) experienced significantly lower postsecondary outcomes when compared to same-aged peers. These outcomes included lower graduation rates, higher unemployment rates, and difficulty establishing independent living arrangements (Wagner & Newman, 2015). Following a human-centered, design-based approach, the scholar-practitioner found a lack of consistent and meaningful transition support specifically designed for students with EBD. Working with a stakeholder team of educational professionals directly involved in supporting transition for students with EBD at an alternative special education program, the scholar-practitioner developed a "Transition Toolkit". The toolkit contained scaffolded grade-level checklists (for grades 6–12) with self-advocacy and goal-setting …

Compliance And Systems Data Management Report: Monthly Waiver Participation Trends, June 2026, Tennessee. Department Of Disability And Aging

Compliance & System Data/Reports

This monthly report provides data on various aspects of the department's activities and programs.

Silk Vista Baby Versus Pipeline Embolization Device For Unruptured Distal Anterior Cerebral Artery Aneurysms: A Multicenter Propensity-Weighted Comparative Study., Valerio Da Ros, Frédéric Clarençon, Adam A. Dmytriw, Pascal Jabbour Md, Marios Psychogios, Peter Sporns, Ajit S. Puri, Ameer E. Hassan, Oktay Algin, Markus A. Möhlenbruch, Mauro Bergui, Oded Goren, Gregoire Boulouis, Takeshi Morimoto, Raoul Pop, Joanna Wk Ho, Virginia Pujol Lereis, Jared Cooper, Giancarlo Salsano, Alessandro Sgreccia, Arturo Consoli, Eytan Raz, Julien Burel, Khawaja Muhammad Baqir Hassan, Zhe Ji, Riitta Rautio, Maria Ruggiero, Federico Sabuzi, Stefania Proietti, Joseph Domenico Gabrieli, Michael Levitt, Antonio Armando Caragliano, Christophe Cognard, Gaultier Marnat, Nicola Limbucci, Mariangela Piano, Alexis Guedon, Andrea Romi, Fortunato Di Caterino, Mykola Vyval, Adrien Guenego, Mohamad Abdalkader, Thanh Nguyen, Vitor Mendes Pereira, Ocilio Ribeiro Goncalves, Erwah Kalsoum, Alessandro Pedicelli, Andrea M Alexandre, Luca Scarcia

Department of Neurosurgery Faculty Papers

BACKGROUND: Flow diversion is effective for unruptured distal anterior cerebral artery (DACA) aneurysms, yet comparative data between the Silk Vista Baby (SVB) and Pipeline Embolization Device (PED) in this challenging territory remain scarce.

METHODS: We conducted a retrospective multicenter study using the CRETA Registry, including consecutive patients with unruptured DACA aneurysms treated with SVB or PED. The primary endpoint was complete angiographic occlusion (O'Kelly-Marotta grade D). Secondary outcomes included procedural characteristics, clinical outcome (modified Rankin Scale), and complications. Overlap weighting was applied to account for non-randomized treatment allocation. Predictors of occlusion were explored using penalized logistic regression. A sensitivity analysis …

Can Generative Ai Make Farming Decisions? Current Status And Future Pathways: A Case Study In Row Crop Production With Chatgpt, Nipuna Chamara, Yufeng Ge, Joe Luck, Yu Pan, Saleh Taghvaeian, Cory Walters, Christopher Proctor, Daran Rudnick, Daren Redfearn

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The agricultural decision-making process is experience-based, knowledge-dependent, time-sensitive, complex, and driven by historical data. Planting, fertilization, irrigation, and chemigation are key categories in farm decision-making, and currently there is no one-shot decision-support tool that covers all these activities. Generative Artificial Intelligence (AI) models are more advanced than traditional machine learning and deep learning models. These models have been trained on vast amounts of data from the internet, allowing them to accept unstructured data in various forms and generate human-like text, solutions to problems, and scenario predictions. Given this capability, we became interested in exploring the potential of generative AI in …

Structured Telehealth Community Health Worker-Clinician Feedback And Diabetes Outcomes: A Randomized Clinical Trial, Elizabeth Vaughan, Xiaoying Yu, Amber Amspoker, Aanand Naik, Ashok Balasubramanyam, Craig Johnston, Christi Ballantyne, Salim S. Virani, Shelton Brown, Kristina Mena

Population Health, East Africa

Importance  Community health workers (CHWs) improve chronic disease management in underserved populations, but scalable integration strategies are limited.

Objective  To evaluate whether a multidimensional intervention incorporating telementored CHWs and a structured participant-CHW-clinician feedback loop can improve diabetes outcomes.

Design, Setting, and Participants  This 12-month randomized clinical trial was conducted at 3 institutionally and geographically diverse community clinics in Texas between September 1, 2023, and April 30, 2025, and included low-income, uninsured White Hispanic adults with type 2 diabetes identified through clinic databases. Data were analyzed between May 1 and July 31, 2025.

Intervention  Individuals were randomized 1:1 to the intervention …

Family Planning Exemplar Country Selection Methodology: Time Lag And Trends Analysis, Zahid Memon, Abeer Mian, Ira Martopullo, Narjis Hussain, Zeba Sathar, Ali Mohammad Mir, Michael Mbizvo, Marleen Temmerman, Jen Drake, Zulfiqar Bhutta

Centre of Excellence in Women and Child Health

Introduction While many countries achieved notable gains in contraceptive use levels after the 1994 International Conference on Population and Development which redefined family planning (FP) as a human right, there was a long period of 15 years when contraceptive use levels did not receive due attention. It was only later that its subsequent inclusion in the Sustainable Development Goals and the 2012 London Summit on FP renewed global commitment and a focus towards FP. This paper aims to select countries that identify as ‘exemplar’ low-middle-income countries that have achieved exceptional progress in FP. Examining these outliers can uncover actionable drivers …

Mathematical Models Of Multisensory Detection And Decision-Making, Rebecca M. Brady

Doctoral

The brain seamlessly integrates signals from multiple sensory modalities to interpret the world efficiently. By using information from various senses, the brain can enhance its ability to detect and respond to stimuli more quickly and accurately. However, combining sensory cues from multiple modalities is only sometimes beneficial as it may lead to illusions and reduced behavioural performance. Behavioural and electrophysiological experiments have revealed that detection and decision-making strategies for multisensory cues evolve throughout human development and ageing. Additionally, studies have demonstrated that maladaptive multisensory processing is a key indicator of a proclivity to falls in older adults and individuals with …

Parenting Styles And Experiences Of Parents Of Children With Down Syndrome Displaying Aggressive Behaviors, Melanie Ray

Walden Dissertations and Doctoral Studies

No abstract provided.

Transformational Leadership And Financial Sustainability Of American Fastfood Nonfranchise Restaurants, Amar Verma

Walden Dissertations and Doctoral Studies

No abstract provided.

New Graduate Nurses' Experiences Of Leaving The Emergency Department, Gemma John

Walden Dissertations and Doctoral Studies

No abstract provided.

The Perspectives Of Parents On Barriers To Parental Involvement In Title I Schools, Beverly Pascal

Walden Dissertations and Doctoral Studies

No abstract provided.

An Analysis Of Public Library Services For The Tribal Community In Rayalaseema Region With A Special Reference To Healthcare And Hygiene, P Ramu Naik Mr, V. K. Dhanyasree Dr

Library Philosophy and Practice (e-journal)

Public libraries have long been recognised as critical societal institutions, serving as information, education, and community engagement centres. In the context of tribal communities, their role in disseminating health information is particularly significant. Tribal populations often face unique health challenges and disparities, making access to accurate and reliable health information vital to their well-being. This study examines the pivotal role that public libraries play in disseminating health information to tribal people. The study is conducted among 13 branch libraries in the tribal areas of Rayalaseema region. A structured questionnaire was used for the survey. The results show that even though …

Foundation For A Digital Beamforming System Using Software Defined Radio, Daniel Cruz Guerrero, Shiron Bendrihem, Benjamin Tucker

Electrical Engineering

This report demonstrates a basis for the foundation of a software-defined radio (SDR)-based digital beam forming system. Specifically, a discussion of time, frequency, and phase synchronization is had in the absence of costly hardware like an OctoClock. Furthermore, this report digs deep into the design process and device characterization of a 4-way Wilkinson Power Divider, which is a necessary hardware component for phase calibration. SDR synchronization and calibration are critical in any digital beamforming system.

Design And Characterization Of A Pulsed Electric Field Chamber For Microalgae Lysis, Connor Strutin

Electrical Engineering

Microalgae are a promising renewable source of biofuel due to their high lipid content and rapid growth rates; however, algae cells must be electroporated (lysed) to release these lipids. The system developed in this project applies short (40 μs–10 ms), high-intensity (up to 33 kV/cm) pulsed electric fields (PEF) across cell membranes to enable electroporation.

Our lab-scale PEF chamber generates uniform, high-intensity electric fields using parallel-plate electrodes with sub-millimeter spacing. The system is designed to efficiently lyse microalgae cells for lipid extraction and biofuel production.

From Transcriptome To Function: Multimodal Characterization Of Transcriptionally Defined Ventral Tegmental Area Dopamine Neurons, Natalie Dalton Fitzgerald

ETDs from 2020-2029

Substance use disorder is a complex neurobiological disease characterized by impaired control over drug taking and drug seeking. Drugs of abuse exert their reinforcing effects largely through dopaminergic (DAergic) projections from the ventral tegmental area (VTA) to the nucleus accumbens, where all drugs of abuse increase DA transmission. Beyond reward processing and reward learning, the VTA contributes to a range of psychiatric conditions, including schizophrenia and attention-related disorders. Although DA signaling has long been a major focus of addiction research, recent transcriptomic studies have revealed substantial heterogeneity of cell types within the VTA. Previous work from our lab identified two …

Advancing Telehealth Pulmonary Rehabilitation For Individuals With Copd: Integrating Scoping Review, Quantitative, And Qualitative Studies To Inform A Multidomain Telewellness Framework, Pooja Arora

ETDs from 2020-2029

Background Chronic obstructive pulmonary disease (COPD) is a heterogeneous, progressive respiratory condition and the third leading cause of death worldwide. It is associated with dyspnea, reduced exercise tolerance, significant psychological burden, and poor quality of life. Telehealth pulmonary rehabilitation (PR) has evolved as an effective approach to improve health outcomes and overcome barriers related to center based pulmonary rehabilitation. However, it is important to determine whether these programs are guided by intervention frameworks that effectively promote overall well-being in individuals with COPD. This dissertation examined current telehealth PR models and evaluated the effectiveness of a generic, comprehensive telewellness program (MENTOR: …

Phenome-Wide Association Study Of P2rx7 Identifies Schizophrenia And Mood Disorders As Primary Associated Phenotypes, Ling Zhu, Qiao Mao, Zhixiong Luo, Bin Chen, Yong Zhang, Xiaowei Lu, Ping Liu, Jiawu Ji, Xiaoping Wang, Kesheng Wang Phd, Ma, Bs, Xinghua Pan, Yuping Cao, Na Liu, Jennifer Luo, Lingjun Zuo, Zhiren Wang, Xingguang Luo, Xiaoyun Guo

Faculty Publications

Objectives: P2RX7 has been implicated in bipolar disorder, major depressive disorder, schizophrenia, anxiety disorders, Alzheimer's disease, and Parkinson's disease. However, the specificity and comparability of these as sociations remain unclear. This study aimed to systematically evaluate multiple neuropsychiatric disorders to identify those most robustly associated with P2RX7.

Methods: We analyzed 1861 imputed SNPs spanning the P2RX7 gene in 1,087,925 individuals from 72 inde pendent cohorts across 18 neuropsychiatric disorders. SNP-disease associations were assessed within each cohort, followed by meta-analysis and false discovery rate (FDR) correction to identify significant disease-risk variants. P2RX7 mRNA and protein expression across tissues or cells …

Jemila Lea, Jemila Lea

Faculty CVs

No abstract provided.

Michael K. Young, Michael K. Young

Faculty CVs

No abstract provided.

An Aggressive Presentation Of Anti-Melanoma Differentiation-Associated Gene 5 (Mda-5)-Positive Dermatomyositis With Rapidly Progressive Interstitial Lung Disease: A Case Report, Zamanali Khakhar, Shreedhi Patel, Rajiv Patel, Soraiya Manji, Fredrick Otieno, Sayed Karar

Internal Medicine, East Africa

Anti-melanoma differentiation-associated gene 5 (MDA-5) dermatomyositis is an uncommon condition that is frequently complicated by rapidly progressive interstitial lung disease (RP-ILD), resulting in a poor prognosis. Due to its aggressive course, management is often challenging and requires timely interventions to improve outcomes. This case of a female patient with anti-MDA-5-positive DM and RP-ILD aims to document this unique and uncommon condition, its aggressive clinical course, associated complications, diagnostic challenges, and management considerations.

The Neighbor, Adam Wanlin

Intertidal

No abstract provided.

Draft Final Silver Bow Creek Conservation Area (Sbcca) Butte Reduction Works (Brw) Air Monitoring For Interim Demolition Activities – Phase Ii Data Summary Report (Dsr), Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Decreasing Hospital Acquired Pressure Injuries Through Increased Skin Surveillance In High-Risk Patients, Elizabeth Toll, Princetta Morales

2026 Nursing Research Conference

No abstract provided.

Volume 41, Issue 1, Full Issue, Journal Of Rural Social Sciences

Journal of Rural Social Sciences

No abstract provided.

Oral Health And Alzheimer’S Disease: The Systemic Connection, Anne O. Rice Bs, Rdh

Metro Denver Dental Society Articulator Magazine

This evidence-based article examines the research connecting oral inflammation and periodontal disease with Alzheimer’s disease and cognitive decline. The author, Anne O. Rice, explores inflammatory, vascular, microbial and airway-related pathways that may contribute to neurodegeneration. Practical applications for dental professionals are highlighted, including blood pressure screening, periodontal therapy, airway assessment and interdisciplinary collaboration. The article positions dentistry as an important contributor to preventive, whole-person healthcare and dementia risk reduction.

Leadership Revisited, Allen Vean Dmd

Metro Denver Dental Society Articulator Magazine

This Reflections examines the importance of communication, collaboration and human connection in dental practice management. Dr. Allen Vean draws parallels between healthcare teams and organizational leadership models, and discusses how trust, morale and team engagement directly impact patient care and practice culture. The article also explores the evolving role of AI and technology in dentistry while emphasizing that human interaction remains essential to long-term success. The author implores dentists to foster stronger team relationships to create patient-centered practice environments.