Digital Commons Network^™

Quantitative Assessment Of The Trocarwash™ System For Automated Laparoscopic Camera Cleaning, Maaz Ahmed, Ashok Gowda, Fatemeh Alavi Naini, Alexander Le, John Treffalls, Robin Torres, Bryan M Burt

Faculty, Staff and Students Publications

Background: Soilage of the surgical endoscope occurs frequently during minimally invasive surgery. The resultant impairment of visualization of the surgical field compromises patient safety, prolongs operative times, and frustrates surgeons. The standard practice for cleaning the surgical camera involves a disruption in the conduct of surgery by completely removing the endoscope from the field, manually cleaning its lens, treating it with a surfactant, and reinserting it into the patient; after which the surgeon resumes the procedure.

Methods: We developed an automated solution for in vivo endoscope cleaning in minimally invasive surgery- a port that detects the position of the endoscope …

Endotoxin, A Novel Biomarker For The Rapid Risk Assessment Of Faecal Contamination Of Coastal And Transitional Waters, Christian R. Good, Alistair White, Joao Brandao, Simon Jackson

School of Biomedical Sciences

Current methods for testing water for faecal contamination rely on the culture of faecal indicator bacteria (FIB; Escherichia coli and Enterococci) that take 24–48 h, which leads to delays in taking proactive measures and poses a risk to public health. More rapid methods are therefore required. Here, we have tested a rapid, portable assay (Bacterisk) that detects the bacterial biomarker endotoxin in 30 min to quantify the bacterial biomass present, to evaluate 159 coastal water samples and to compare the results with the traditional culture of FIB. There was a significant correlation between the Bacterisk data given in endotoxin risk …

Ethological Computational Psychiatry: Challenges And Opportunities, Ilya E Monosov, Jan Zimmermann, Michael J Frank, Mackenzie W Mathis, Justin T Baker

2020-Current year OA Pubs

Studying the intricacies of individual subjects' moods and cognitive processing over extended periods of time presents a formidable challenge in medicine. While much of systems neuroscience appropriately focuses on the link between neural circuit functions and well-constrained behaviors over short timescales (e.g., trials, hours), many mental health conditions involve complex interactions of mood and cognition that are non-stationary across behavioral contexts and evolve over extended timescales. Here, we discuss opportunities, challenges, and possible future directions in computational psychiatry to quantify non-stationary continuously monitored behaviors. We suggest that this exploratory effort may contribute to a more precision-based approach to treating mental …

Genetic Loci Regulate Sarbecovirus Pathogenesis: A Comparison Across Mice And Humans, Alexandra Schäfer, Laura A Vanblargan, Larissa B Thackray, Michael S Diamond, Et Al.

2020-Current year OA Pubs

Coronavirus (CoV) cause considerable morbidity and mortality in humans and other mammals, as evidenced by the emergence of Severe Acute Respiratory CoV (SARS-CoV) in 2003, Middle East Respiratory CoV (MERS-CoV) in 2012, and SARS-CoV-2 in 2019. Although poorly characterized, natural genetic variation in human and other mammals modulate virus pathogenesis, as reflected by the spectrum of clinical outcomes ranging from asymptomatic infections to lethal disease. Using multiple human epidemic and zoonotic Sarbecoviruses, coupled with murine Collaborative Cross genetic reference populations, we identify several dozen quantitative trait loci that regulate SARS-like group-2B CoV pathogenesis and replication. Under a Chr4 QTL, we …

A Combined Method Of Optimized Learning Vector Quantization And Neuro-Fuzzy Techniques For Predicting Unified Parkinson's Disease Rating Scale Using Vocal Features, Hossein Ahmadi, Mehrbakhsh Nilashi, Mesfer Alrziq, Abdullah Alghamdi, Waleed Abdu Zogaan

School of Nursing and Midwifery

Parkinson's Disease (PD) is a common disorder of the central nervous system. The Unified Parkinson's Disease Rating Scale or UPDRS is commonly used to track PD symptom progression because it displays the presence and severity of symptoms. To model the relationship between speech signal properties and UPDRS scores, this study develops a new method using Neuro-Fuzzy (ANFIS) and Optimized Learning Rate Learning Vector Quantization (OLVQ1). ANFIS is developed for different Membership Functions (MFs). The method is evaluated using Parkinson's telemonitoring dataset which includes a total of 5875 voice recordings from 42 individuals in the early stages of PD which comprises …

International Summer Schools As A Platform Of Inclusive Education For Doctoral Students, Suparna Bagchi

School of Law, Humanities and Social Sciences

This paper is based on reflections on my understanding of international summer schools, drawing from my personal experiences while participating in one of them, which took place in a European country in 2021. I argue that international summer schools can play an important role as an international academic forum in the practice of inclusive education for doctoral students and early career researchers from various perspectives. I use the model of three levels of inclusion advanced by Qvortrup and Qvortrup to justify my arguments in this autoethnographic study. I discuss the study methodology and provide an overview of the timetable followed …

Inherited C-Terminal Trex1 Variants Disrupt Homology-Directed Repair To Cause Senescence And Dna Damage Phenotypes In Drosophila, Mice, And Humans, Samuel D Chauvin, Fang R Zhao, W Alexander Stinson, Wei Qian, Prabhakar S Andhey, Maxim N Artyomov, Elisha D O Roberson, Jonathan J Miner, Et Al.

2020-Current year OA Pubs

Age-related microangiopathy, also known as small vessel disease (SVD), causes damage to the brain, retina, liver, and kidney. Based on the DNA damage theory of aging, we reasoned that genomic instability may underlie an SVD caused by dominant C-terminal variants in TREX1, the most abundant 3'-5' DNA exonuclease in mammals. C-terminal TREX1 variants cause an adult-onset SVD known as retinal vasculopathy with cerebral leukoencephalopathy (RVCL or RVCL-S). In RVCL, an aberrant, C-terminally truncated TREX1 mislocalizes to the nucleus due to deletion of its ER-anchoring domain. Since RVCL pathology mimics that of radiation injury, we reasoned that nuclear TREX1 would cause …

Towards Understanding The Post-Colonial In The Development Of Irish Economics, Joseph K. Fitzgerald Dr., Brendan K. O'Rourke

Conference Papers

This conference contribution is prompted by recent work where theories used to understand the economists in countries like France, Britain, Germany, and the USA (Fourcade, 2009; Maesse, 2015) were used to study the development of Irish economics profession. Work on Ireland (FitzGerald & O’Rourke, 2023), though using these frameworks, revealed the importance of Ireland’s colonial and post-colonial experiences in the social status of economics in today’s Ireland. Escobar (2011) points to the power of economists in development discourses focussing particularly on the case of Columbia and the interaction between USA economics with its southern neighbours in the period since the …

Anti-Stigma Interventions In Low-Income And Middle-Income Countries: A Systematic Review, Tazeen Majeed, Gareth Hopkin, Katie Wang, Smriti Nepal, Nicole Votruba, Petra Gronholm, Dristy Gurung, Maya Semrau, Tanmay Bagade, Nick Farina, Christine Musyimi, Luca Pingani, Erica Breuer, Crick Lund, Graham Thornicroft, Sara Evans-Lacko

Peninsula Medical School

Background: Stigma exacerbates power imbalances and societal disparities, significantly impacting diverse identities and health conditions, particularly for low and middle-income countries (LMICs). Though crucial for dismantling harmful stereotypes, and enhancing healthcare utilisation, existing research on anti-stigma interventions is limited with its condition-focused approach. We aimed to thoroughly evaluate peer-reviewed and non-peer-reviewed literature for a comprehensive review of anti-stigma interventions for diverse identities and all health conditions in LMICs. Methods: This review systematically explored peer-reviewed and non-peer-reviewed literature, in ten electronic databases up to January 30, 2024, covering all anti-stigma interventions across various stigmatised identities and health conditions in LMICs. Quality …

Clonality And Epidemiological Studies Of E. Coli Strain Collected From Abu Dhabi Emirate Using Ngs And Bioinformatic Tools, Ahmed Abdelrahman Mohamed

Theses

In the current landscape, where antibiotic resistance in bacteria is steadily rising, the role of bacterial genomics has assumed increasing significance. Therefore, it is necessary for microbiologists to acquire proficiency in the utilization of these methods and tools to harness their potential in gaining valuable insights into bacterial genomes. This can facilitate the development of innovative strategies for managing and treating bacterial infections. Here we present the power of the whole-genome sequencing technology in characterization of multidrug resistant Escherichia coli isolates. Fourteen Escherichia coli isolates were selected for this study. Following the standard microbiological techniques to confirm the sample identification, …

Salivary Microbiome Signature In Pediatric Inflammatory Bowel Disease, Ghaidaa Mohammed Mesto

Theses

Inflammatory bowel disease (IBD) is a complex disorder characterized by chronic inflammation of the gastrointestinal tract (GIT). IBD mainly includes two distinct diseases, namely Crohn’s disease (CD) and ulcerative colitis (UC). To date, the precise etiology of these conditions is not fully elucidated, although a strong relationship between microbial dysbiosis in the GIT and IBD has been proposed. In general, limited data is available on the oral microbiome of IBD patients, despite its recognizable role in impacting gut health. There is a paucity of research on IBD in the pediatric population, although this disease is becoming more prevalent than in …

Mitochondrial Control Of Tumorigenicity And Immunogenicity Of Colorectal Cancer, Maram Esam Ahmed

Theses

The Methylation-controlled J protein (MCJ), also known as DNAJC15, serves as an endogenous negative regulator of mitochondrial respiration. MCJ plays a crucial role in cellular bioenergetics by regulating cellular metabolism, and its expression is inversely proportional to the extent of mitochondrial ATP production. In the current study, we aimed to investigate the relationship between MCJ expression and the tumorigenicity and immunogenicity of colon adenocarcinoma. To this aim, we utilized MCJ knockout (KO) mice to assess the impact of tumor-extrinsic MCJ expression in host cells, particularly immune cells, on anti-tumor responses. Comparing the growth of MCJ-expressing cancer cells in wild-type vs. …

Diversity, Distribution, And Determinants Of Bacterial Communities In Arctic Soil, Amna Khaleefa Alhemeiri

Theses

Arctic soils host diverse bacterial communities crucial for ecosystem functioning and nutrient cycling. Understanding the factors shaping their diversity and distribution is essential to assess ecosystem responses to climate warming. This study aimed to assess and compare bacterial diversity and community structure between high- and sub-arctic ecosystems and explore the environmental and climatic factors determining their distribution. We collected 16S rRNA gene amplicon sequence data from 999 samples of high- and sub-arctic soils. All the data was pre-processed and quality-controlled using a similar bioinformatics methodology, followed by statistical analyses including alpha and beta diversity assessments, and volatility analysis using QIIME2. …

Germination And Seedling Growth Of Native Uae Plant Species: The Combined Effects Of Elevated Co2 And Temperature, Nour Elhouda Debouza

Dissertations

Understanding how indigenous plant species respond to arid environmental stressors is critical for biodiversity preservation and the development of sustainable agricultural practices in the United Arab Emirates (UAE). This study investigated the morphological and physiological aspects of the germination and early growth stages, along with the adaptation strategies of three indigenous plant species—Senna italica, Prosopis cineraria, and Tephrosia nubica. The controlled chamber experiments aimed to subject the three selected indigenous species to elevated CO2 (400 ppm ambient to 800 ppm) and temperature (35°C ambient to 50°C) for simulating future atmospheric carbon dioxide (CO2) and temperature scenarios. …

Development Of Highly Efficient Hybridfunctionalized Membranes For Sustainable Water Harvesting, Ahmed Z. Abuibaid

Dissertations

Water scarcity has emerged as a critical global challenge. This problem catches the world's interest through events such as the severe drought in Europe during the summer of 2022. While desalination plants offer a solution, their high energy consumption necessitates the exploration of alternative, sustainable water resources. Addressing the urgent need for alternative water resources in the face of increasing water scarcity. A viable option was presented by fog harvesting, which is a method to collect water from atmospheric fog. This method was initially developed to meet the demands of a variety of sectors such as agricultural purposes, and household …

Design, Synthesis And Characterization Of Zinc And Gold-Based Metal Organic Frameworks And Complexes For The Detection And Treatment Of Cancer, May Reda Mohamed

Dissertations

The early detection of cancer plays a pivotal role in improving patient outcomes, emphasizing the urgent need for highly sensitive and selective biosensing platforms. Metal-Organic Frameworks (MOFs) have emerged as promising candidates in this domain due to their tunable properties, large surface area, and high porosity. Herein, the utilization of zinc-based MOF as a sophisticated biosensing platform tailored for the precise detection of the HER2 cancer biomarker is presented. HER2, a critical protein marker in breast cancer diagnostics and treatment, demands highly selective and accurate detection methods for effective patient management. Simple hydrothermal synthesis methodology has been adopted to synthetize …

Identification Of Circrna Biomarkers In Osteosarcoma: An Updated Systematic Review And Meta-Analysis, Chunbin Zhou, Lois Balmer, Manshu Song, Gehendra Mahara, Kezhou Wu, Wei Wang, Hu Wang

Research outputs 2022 to 2026

Circular RNAs (circRNAs) play a crucial role in cancer development and progression. This study aimed to identify potential circRNA biomarkers for osteosarcoma. Articles published from January 2010 to September 2023 were searched across eight databases to compare circRNA expression profiles in osteosarcoma and control samples (human, animal and cell lines). Meta-analysis was conducted under a random effects model. Subgroup analysis of circRNAs in different samples and tissues was performed. Diagnostic value was evaluated using receiver operator characteristic curves. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis explored functions of circRNA host genes. A circRNA-miRNA-mRNA axis …

Bidirectional Two-Sample Mendelian Randomization Study Of Immunoglobulin G N-Glycosylation And Senescence-Associated Secretory Phenotype, Haotian Wang, Di Liu, Xiaoni Meng, Wenxin Sun, Cancan Li, Huimin Lu, Deqiang Zheng, Lijuan Wu, Shengzhi Sun, Youxin Wang

Research outputs 2022 to 2026

Observational studies revealed changes in Immunoglobulin G (IgG) N-glycosylation during the aging process. However, it lacks causal insights and remains unclear in which direction causal relationships exist. The two-sample bidirectional Mendelian randomization (MR) design was adopted to explore causal associations between IgG N-glycans and the senescence-associated secretory phenotype (SASP). Inverse variance weighted (IVW) and Wald ratio methods were used as the main analyses, supplemented by sensitivity analyses. Forward MR analyses revealed causal associations between the glycan peak (GP) and SASP, including GP6 (odds ratio [OR] = 0.428, 95% confidence interval [CI] = 0.189–0.969) and GP17 (OR = 0.709, 95%CI = …

High Rates Of Erosion On A Wave-Exposed Fringing Coral Reef, Damian P. Thomson, Shannon Dee, Christopher Doropoulos, Melanie Orr, Shaun K. Wilson, Andrew S. Hoey

Research outputs 2022 to 2026

Erosion is a key process in shaping the physical structure of coral reefs, yet due to erosion being semi-cryptic and difficult to quantify, information remains limited. Here, we investigate erosional processes along Ningaloo Reef, an extensive fringing coral reef in Western Australia. We employed both direct and indirect methods to measure erosion in wave-exposed reef slopes and protected lagoonal habitats. Direct measurements of erosion on coral blocks were among the highest found globally, with total erosion of 3.07 kg m−2 yr−1 (4% from micro, 0.6% from macro, and 94% from external), whilst indirect rates were estimated at 2.4 ± 0.20 …

'Glow Up' & 'Geoglyph Animated', Bobby Groth, Frank Cooke

.RAW Journal of Art and Design

No abstract provided.

Table Of Contents, Sarai Devi Dasi

.RAW Journal of Art and Design

No abstract provided.

Full Issue, Sarai Devi Dasi, Vivian Jameson

.RAW Journal of Art and Design

No abstract provided.

Articulator Q1 2023

Metro Denver Dental Society Articulator Magazine

The MDDS Articulator magazine has been serving as the voice for Denver's dental community for over 100 years.

Distributed to approximately 2,000 dental professionals quarterly, the Articulator features local news, industry trends, practice management guidance, data-driven research and more. The award-winning publication is available to member dentists in both print and digital forms.

Issues include cover and feature articles alongside regular columns with regional news impacting the Metro Denver membership including editorial and perspectives columns, legal, association activities, component news, continuing education opportunities, and classifieds.

Synod And The Arts Inspire Hope And Imagination, Becky Mcintyre, Beth Ford Mcnamee Ed.D., Maureen O'Connell

Jesuit Higher Education: A Journal

The process of journeying together, spiritual listening, discerning communally, and incorporating community art has kindled hope and imagination for Philadelphia-area university students during the ongoing, three-year global Synod on “Communion, Participation and Mission,” which Pope Francis convened in October of 2021. The SCHEAP leadership team desires to share what we have learned through our hope-filled and creative synodal process so that others may cultivate the protagonism of college students in imagining the future of the Church through synodal practices of spiritual listening, relationship-building, and creative communal discernment.

Innovative Climate Pedagogy: Interdisciplinary Approaches To Teaching Climate Change, Jennifer Sweeney Tookes, Lissa M. Leege

International Journal for the Scholarship of Teaching & Learning

As a “wicked problem,” climate change requires interdisciplinary understanding and collaboration in order to prepare future leaders to develop solutions. To this end, as an ecologist and an anthropologist at a mid-sized university in the southeastern U.S., we designed a pair of interdisciplinary, research-intensive courses for first-year Honors students with the goal of improving understanding and communicating the urgency of climate change. We employed High Impact Practices (HIPs) and Course-Based Undergraduate Research Experiences (CUREs) to accomplish learning outcomes during both years of the course. Gains in scientific knowledge and climate change-specific knowledge were assessed with quantitative and qualitative analysis of …

Monogamy, Who? Cheating In The Animal Kingdom, Madison Roberts

UTC Spring Research and Arts Conference

Animal social systems have four interrelated components, two of which are social organization and the mating system. One way to represent the mating system is through multiple paternity, which is defined as the percentage of litters with more than one father. This research project looks at variables that might influence multiple paternity including evolutionary relationships, litter size, female body mass, sexual size dimorphism, and male social organization. Results support the literature that multiple paternity increases with increasing litter size. While not significant, multi-male groups seem to have more influence on multiple paternity than other male social organization groups. Lastly, there …

Agent-Based Modeling For The Neophyte: An Application Of Netlogo, Olcay Akman, Siddharth Bhumpelli, Christopher Hay-Jahans

Spora: A Journal of Biomathematics

Agent-based modeling has found applications in a wide range of fields including economics, sociology, ecology, epidemiology, transportation planning, and more. Its versatility allows researchers to investigate various “what-if” scenarios, test the effects of different policies or interventions, and gain insights into the underlying mechanisms driving complex systems. This article is intended for the curious student or researcher who is unfamiliar with agent based modeling, and is looking for a quick but reasonably informative exposure to the field.

Network Slicing And Noma Enabled Mobile Edge Computing For Next-Generation Networks, Mohammad Arif Hossain

Dissertations

The advent of next-generation wireless networks ushers in a new era of potential, harnessing cutting-edge technologies like mobile edge computing (MEC), non-orthogonal multiple access (NOMA), and network slicing as pivotal drivers of transformation. Within this landscape, an innovative approach is proposed by introducing a NOMA-enabled network slicing technique within MEC networks. This approach aims to achieve multiple objectives: meeting stringent quality of service requirements, minimizing service latency, and enhancing spectral efficiency. By seamlessly integrating NOMA with network slicing in edge computing environments, significant reductions in overall latency are achieved, alongside ensuring optimal resource allocation for NOMA users. To address these …

Interaction Of Particles With Plasma And Shock Produced By Pulsed Spark Discharge, Shomik Mukhopadhyay

Dissertations

Interactions of powders with high-temperature plasma and shockwaves occur in diverse scenarios, such as nuclear blasts, accidental industrial dust explosions, solid propellant combustion in explosive charges and when removing contaminants from surfaces. Electrostatic Discharge (ESD), known for generating shock and plasma, is a promising lab-scale technique for simulating these interactions. Studies with ESD involved placing powders near a spark-producing gap between electrodes and observing mechanical and chemical processes like particle motion and ignition. A limited range of spark conditions and material properties have been tested, which facilitated the development and validation of preliminary computational models describing this system. Significant gaps …

A Molecular Dynamics Study On The Destruction Mechanism Of Per And Polyfluoroalkyl Substances Due To Ultrasound Technology, Bruno Bezerra De Souza

Dissertations

Per- and polyfluoroalkyl substances (PFAS) are a group of stable synthetic chemicals that are highly persistent and harmful pollutants to the environment and human health. PFAS have caused a strong public and regulatory response due to their ubiquitous presence in the environment and toxicity to humans. The application of ultrasound is one of the most effective treatment technologies for the mineralization of PFAS in contaminated water. However, this technology is treated as a black box causing the inability to be optimized. Therefore, there is a pressing need to investigate the intricate dynamics of PFAS degradation under ultrasound to unlock its …