Digital Commons Network^™

Dopaminergic Neurons In Zona Incerta Drives Appetitive Self-Grooming, Zhiying Jiang, Michelle He, Claire Young, Jing Cai, Yuanzhong Xu, Yanyan Jiang, Hongli Li, Maojie Yang, Qingchun Tong

Faculty, Staff and Student Publications

Dopaminergic (DA) neurons are known to play a key role in controlling behaviors. While DA neurons in other brain regions are extensively characterized, those in zona incerta (ZITH or A13) receive much less attention and their function remains to be defined. Here it is shown that optogenetic stimulation of these neurons elicited intensive self‐grooming behaviors and promoted place preference, which can be enhanced by training but cannot be converted into contextual memory. Interestingly, the same stimulation increased DA release to periaqueductal grey (PAG) neurons and local PAG antagonism of DA action reduced the elicited self‐grooming. In addition, A13 neurons increased …

An Analysis Of Suspected Microplastics In The Muscle And Gastrointestinal Tissues Of Fish From Sarasota Bay, Fl: Exposure And Implications For Apex Predators And Seafood Consumers, Eric Conger, Miranda Dziobak, Elizabeth J Berens Mccabe, Tita Curtin, Ayushi Gaur, Randall S Wells, John E Weinstein, Leslie B Hart

Faculty, Staff and Student Publications

Microplastics have been found in the gastrointestinal (GI) fluid of bottlenose dolphins (Tursiops truncatus), inhabiting Sarasota Bay, FL, suggesting exposure by ingestion, possibly via contaminated fish. To better understand the potential for trophic transfer, muscle and GI tissues from 11 species of dolphin prey fish collected from Sarasota Bay were screened for microplastics (particles <5 mm diameter). Suspected microplastics were found in 82% of muscle samples (n=89), and 97% of GI samples (n=86). Particle abundance and shapes varied by species (p<0.05) and foraging habit (omnivore vs. carnivore, p<0.05). Pinfish (Lagodon rhomboides) had the highest particle abundance for both tissue types (muscle: 0.38 …

Identification Of Hypoxia-Alcamhigh Macrophage- Exhausted T Cell Axis In Tumor Microenvironment Remodeling For Immunotherapy Resistance, Zhenzhen Xun, Huanran Zhou, Mingyi Shen, Yao Liu, Chengcao Sun, Yanhua Du, Zhou Jiang, Liuqing Yang, Qing Zhang, Chunru Lin, Qingsong Hu, Youqiong Ye, Leng Han

Faculty, Staff and Student Publications

Although hypoxia is known to be associated with immune resistance, the adaptability to hypoxia by different cell populations in the tumor microenvironment and the underlying mechanisms remain elusive. This knowledge gap has hindered the development of therapeutic strategies to overcome tumor immune resistance induced by hypoxia. Here, bulk, single-cell, and spatial transcriptomics are integrated to characterize hypoxia associated with immune escape during carcinogenesis and reveal a hypoxia-based intercellular communication hub consisting of malignant cells, ALCAM

Unraveling The Role Of Mir-181 In Skin Fibrosis Pathogenesis By Targeting Nudt21, Tingting W Mills, Minghua Wu, Jerry Alonso, Hydia Puente, Julio Charles, Zheng Chen, Seung-Hee Yoo, Maureen D Mayes, Shervin Assassi

Faculty, Staff and Student Publications

Systemic sclerosis (SSc) is a life-threatening autoimmune disease characterized by widespread fibrosis in the skin and several internal organs. Nudix Hydrolase 21 (NUDT2 or CFIm25) downregulation in fibroblasts is known to play detrimental roles in both skin and lung fibrosis. This study aims to investigate the upstream mechanisms that lead to NUDT21 repression in skin fibrosis. We identified transforming growth factor β (TGFβ1) as the primary cytokine that downregulated NUDT21 in normal skin fibroblasts. In the bleomycin-induced dermal fibrosis model, consistent with the peak activation of TGFβ1 at the late fibrotic stage, NUDT21 was downregulated at this stage, and delayed …

The Fibro-Adipogenic Progenitor Apod+Dcn+Llum+ Cell Population In Aggressive Carcinomas, Lingyi Cai, Mikhail G Kolonin, Dimitris Anastassiou

Faculty, Staff and Student Publications

We identified a progenitor cell population highly enriched in samples from invasive and chemo-resistant carcinomas, characterized by a well-defined multigene signature including APOD, DCN, and LUM. This cell population has previously been labeled as consisting of inflammatory cancer-associated fibroblasts (iCAFs). The same signature characterizes naturally occurring fibro-adipogenic progenitors (FAPs) as well as stromal cells abundant in normal adipose tissue. Our analysis of human gene expression databases provides evidence that adipose stromal cells (ASCs) are recruited by tumors and undergo differentiation into CAFs during cancer progression to invasive and chemotherapy-resistant stages.

Metabolic Cell Death In Cancer: Ferroptosis, Cuproptosis, Disulfidptosis, And Beyond, Chao Mao, Min Wang, Li Zhuang, Boyi Gan

Faculty, Staff and Student Publications

Cell death resistance represents a hallmark of cancer. Recent studies have identified metabolic cell death as unique forms of regulated cell death resulting from an imbalance in the cellular metabolism. This review discusses the mechanisms of metabolic cell death-ferroptosis, cuproptosis, disulfidptosis, lysozincrosis, and alkaliptosis-and explores their potential in cancer therapy. Our review underscores the complexity of the metabolic cell death pathways and offers insights into innovative therapeutic avenues for cancer treatment.

Inferring Super-Resolution Tissue Architecture By Integrating Spatial Transcriptomics With Histology, Daiwei Zhang, Amelia Schroeder, Hanying Yan, Haochen Yang, Jian Hu, Michelle Y Y Lee, Kyung S Cho, Katalin Susztak, George X Xu, Michael D Feldman, Edward B Lee, Emma E Furth, Linghua Wang, Mingyao Li

Faculty, Staff and Student Publications

Cancer neuroscience is a rapidly growing multidisciplinary field that conceptualizes tumors as tissues fully integrated into the nervous system. Recognizing the complexity and challenges in this field is of fundamental importance to achieving the goal of translational impact for cancer patients. Our commentary highlights key scientific priorities, optimal training settings, and roadblocks to translating scientific findings to the clinic in this emerging field, aiming to formulate a transformative and cohesive path forward.

Small Molecules Targeting Micrornas: New Opportunities And Challenges In Precision Cancer Therapy, Ancuta Jurj, Beatrice Fontana, Gabriele Varani, George A Calin

Faculty, Staff and Student Publications

Noncoding RNAs, especially miRNAs, play a pivotal role in cancer initiation and metastasis, underscoring their susceptibility to precise modulation via small molecule inhibitors. This review examines the innovative strategy of targeting oncogenic miRNAs with small drug-like molecules, an approach that can reshape the cancer treatment landscape. We review the current understanding of the multifaceted roles of miRNAs in oncogenesis, highlighting emerging therapeutic paradigms that have the potential to expand cancer treatment options. As research on small molecule inhibitors of miRNA is still in its early stages, ongoing investigative efforts and the development of new technologies and chemical matter are essential …

Understanding, Diagnosing, And Treating Pancreatic Cancer From The Perspective Of Telomeres And Telomerase, Songting Shou, Yuanliang Li, Jiaqin Chen, Xing Zhang, Chuanlong Zhang, Xiaochen Jiang, Fudong Liu, Li Yi, Xiyuan Zhang, En Geer, Zhenqing Pu, Bo Pang

Faculty, Staff and Student Publications

Telomerase is associated with cellular aging, and its presence limits cellular lifespan. Telomerase by preventing telomere shortening can extend the number of cell divisions for cancer cells. In adult pancreatic cells, telomeres gradually shorten, while in precancerous lesions of cancer, telomeres in cells are usually significantly shortened. At this time, telomerase is still in an inactive state, and it is not until before and after the onset of cancer that telomerase is reactivated, causing cancer cells to proliferate. Methylation of the telomerase reverse transcriptase (TERT) promoter and regulation of telomerase by lactate dehydrogenase B (LDHB) is the mechanism of telomerase …

Beneficial Effects Of Lactobacillus Plantarum On Growth Performance, Immune Status, Antioxidant Function And Intestinal Microbiota In Broilers, Xiao Xiao, Tiantian Cui, Songke Qin, Tao Wang, Jinsong Liu, Lihan Sa, Yanping Wu, Yifan Zhong, Caimei Yang

Faculty, Staff and Student Publications

Lactobacillus plantarum (L. plantarum) has been globally regarded as antibiotic alternative in animal farming in the past few years. However, the potential function of L. plantarum in broilers has not been systemically explored. In this study, a total of 560 one-day-old yellow-feathered broilers were randomly divided into 3 groups, fed with basal diet and drank with L. plantarum HJZW08 (LP) at the concentration of 0 (CON), 1000 × 10^5 (LP1000), and 2000 × 10^5 CFU/L (LP2000) for 70 d. Results showed that the body weight (BW), average daily …

Portraits Of Hispanic/Latino Principals’ Leadership Development In Elementary Schools In Texas: A Narrative Study, Lily Dominguez-Carrero

Electronic Theses and Dissertations

This study aimed to understand the factors influencing the leadership development of Hispanic/Latino principals in elementary public schools in Texas. As the Hispanic/Latino population of students rises, understanding the underrepresented Hispanic/Latino principals’ experiences from adolescence to middle adulthood is critical to unveiling factors that influence their leadership identity development. Using a life story narrative approach to examine leadership development across the lifespan, the study provided themes regarding the pivotal environmental, contextual, personal, and intrapersonal factors influencing the principals’ leadership development. The thematic analysis of the life stories uncovered three prominent themes associated with the most influential factors in leadership development: …

Advancing Robust Autonomous System Localization: Labeling Optimizations For Convolutional Neural Networks, Jeffrey L. Choate

Theses and Dissertations

AAR is increasingly critical as aircraft autonomy advances, particularly for the Global Strike mission of the USAF, enhancing operational range and endurance. Traditional methods relying on GPS and custom communication links are limited in GPS-denied environments. This dissertation advances a single camera method to estimate object pose across three interconnected studies. The system trains a CNN on synthetic imagery to predict bboxes for object components, Solve-PnP algorithm finds the 6DoF pose, then employs novel pseudo-labeling on real-world images. These findings are pivotal for the AAR community and contribute to robotics, computer vision, and CNN research. By enabling robust GPS-free autonomous …

Autonomous Experimentation For Accelerated Calibration Of Fused Deposition Modeling 3d Printers, Graig S. Ganitano

Theses and Dissertations

Additive Manufacturing (AM), also known as 3D printing, has emerged as a key component of Industry 4.0, enabling reduced cost, quick production, greater sustainability, and increased design complexity compared to its traditional manufacturing counterpart. Currently, Fused Deposition Modeling (FDM) technology dominates the AM market with respect to the number of 3D printers in use. However, the FDM process is sensitive to changes in system configuration, especially the feedstock material. Utilizing a new feedstock requires a time-consuming trial-and-error process to identify optimal settings for a large number of process parameters, acting as a barrier to the technology.

To enable greater accessibility …

Optimal Placement Of Artificial Hair-Cell Airflow Sensors For Bioinspired Flight-By-Feel, Alex C. Hollenbeck

Theses and Dissertations

The Sparse Sensor Placement Optimization for Prediction (SSPOP) algorithm reduces highdimensional airflow data to a low-dimensional sparse approximation to identify an optimal placement for any number of sensors on airfoil or wing models of arbitrary shape and size, and outperforms conventional optimization techniques in accuracy and speed. For 2D flow this algorithm found a sensor placement solution (design point, or DP) which predicts AoA to within 0.10 degrees and ranks within the top 1 percent of the design space. On 3D wing models SSPOP found four-sensor DPs ranked well within the top 0.10 percent. Experimental validation with velocity and pressure …

An Optimized Model For Network Intrusion Detection In The Network Operating System Environment, Abbas A. Abdulhameed, Sundos A. Hameed Alazawi, Ghassan Muslim Hassan

Mesopotamian Journal of CyberSecurity

With the heavy reliance on computers and information technology to send and receive data across networks of various types, there has been concern about securing that data from intrusions and cyber-attacks. The expansion of network usage has led to an increase in hacker attacks, which has led to prioritizing cybersecurity precautions in detecting potential threats. Intrusion detection techniques are a critical security measure to protect networks in both personal and corporate environments that are managed by network operating systems. For this, the paper relies on designing a network intrusion detection model. Since deep neural networks (DNNs) are classic deep learning …

Hexarelin Modulates Stress Effects On Ghrelin System Activity In Growing Lambs, Krystina Pierzchała-Koziec, C. G. Scanes, Alina Gajewska

Political Science Faculty Publications and Presentations

Hexarelin modulates stress effects on ghrelin system activity in growing lambs. Folia Biologica (Kraków) 72 : 87-96. Hexarelin is a synthetic ligand for the growth hormone secretagogue receptor 1a (GHSR-1a), also known as the ghrelin receptor. Ghrelin and hexarelin have been observed to influence the HPA axis by increasing the circulating concentrations of both adrenocorticotropin and adrenal glucocorticoid in rats and humans. The aim of this study was to assess the effects of hexarelin on the ghrelin system and the growth hormone (GH)–insulin-like growth factor 1 (IGF-1) axis in lambs stressed by an emotional factor – isolation. The isolation stress …

Shifting Baselines: Visualizing Climate Change In America’S National Parks, Lee Lines

Faculty Publications

No abstract provided.

Ketamine’S Mechanism Of Action With An Emphasis On Neuroimmune Regulation: Can The Complement System Complement Ketamine’S Antidepressant Effects?, Brandi Quintanilla, Carlos A Zarate, Anilkumar Pillai

Faculty, Staff and Student Publications

Over 300 million people worldwide suffer from major depressive disorder (MDD). Unfortunately, only 30-40% of patients with MDD achieve complete remission after conventional monoamine antidepressant therapy. In recent years, ketamine has revolutionized the treatment of MDD, with its rapid antidepressant effects manifesting within a few hours as opposed to weeks with conventional antidepressants. Many research endeavors have sought to identify ketamine's mechanism of action in mood disorders; while many studies have focused on ketamine's role in glutamatergic modulation, several studies have implicated its role in regulating neuroinflammation. The complement system is an important component of the innate immune response vital …

Emerging Treatment Landscape For Guillain-Barré Syndrome (Gbs): What’S New?, Alina Sprenger-Svačina, Martin K R Svačina, Tong Gao, Gang Zhang, Kazim A Sheikh

Faculty, Staff and Student Publications

Introduction: Guillain-Barré syndrome (GBS) is a monophasic immune neuropathic disorder characterized by acute paralysis. A significant portion of patients are left with residual deficits, which presents a considerable global healthcare challenge. The precise mechanisms underlying GBS pathogenesis are not fully elucidated. Recent studies have focused on postinfectious molecular mimicry and identified involvement of IgG autoantibodies and innate immune effectors in GBS. Intravenous immunoglobulins (IVIg) and plasma exchange (PE) are two established evidence-based immunomodulatory treatments for GBS, but a significant proportion of GBS patients fails to respond adequately to either therapy. This emphasizes an urgent need for novel and more potent …

Surgical Necrotizing Enterocolitis And Spontaneous Intestinal Perforation Lead To Severe Growth Failure In Infants, Allison L Speer, Kevin P Lally, Claudia Pedroza, Yuxin Zhang, Brenda B Poindexter, Walter J Chwals, Susan R Hintz, Gail E Besner, David K Stevenson, Robin K Ohls, William E Truog, Barbara J Stoll, Matthew A Rysavy, Abhik Das, Jon E Tyson, Martin L Blakely

Faculty, Staff and Student Publications

Objective: We aimed to determine the incidence of growth failure in infants with necrotizing enterocolitis (NEC) or spontaneous intestinal perforation (SIP) and whether initial laparotomy versus peritoneal drainage (PD) impacted the likelihood of growth failure.

Summary background data: Infants with surgical NEC and SIP have high mortality, and most have neurodevelopmental impairment and poor growth. Existing literature on growth outcomes for these infants is limited.

Methods: This is a preplanned secondary study of the Necrotizing Enterocolitis Surgery Trial dataset. The primary outcome was growth failure (Z-score for weight < -2.0) at 18 to 22 months. We used logistic regression, including diagnosis and treatment, as covariates. Secondary outcomes were analyzed using the Fisher exact or Pearson χ2 test for categorical variables and the Wilcoxon rank sum test or one-way ANOVA for continuous variables.

Results: Among 217 survivors, 207 infants (95%) had primary outcome data. Growth …

Bioengineering Of Intestinal Grafts, Madushani Herath, Allison L Speer

Faculty, Staff and Student Publications

Intestinal failure manifests as an impaired capacity of the intestine to sufficiently absorb vital nutrients and electrolytes essential for growth and well-being in pediatric and adult populations. Although parenteral nutrition remains the mainstay therapeutic approach, the pursuit of a definitive and curative strategy, such as regenerative medicine, is imperative. Substantial advancements in the field of engineered intestinal tissues present a promising avenue for addressing intestinal failure; nevertheless, extensive research is still necessary for effective translation from experimental benchwork to clinical bedside applications.

Assessing The Influence Of Llms On Online Review: Identifying And Addressing The Rise Of Convincing Fake Reviews, Zico Abhi Dey

Dissertations, Theses, and Capstone Projects

Large Language Models (LLMs) have made remarkable advancements, reaching a level where they can generate outputs that compete with human writing. LLM's sophisticated features, however, make it hard for us to spot the difference between human-written and AI-generated text. LLMs have several weaknesses since they are susceptible to hallucinations and outputting factually incorrect information. Additionally, they may be used maliciously to promote deception and instigate fraud, such as fake reviews generation, which rapidly appear on the internet while posing a challenge for consumers who want to place their faith in online reviews. To maintain trust in the online information system, …

Pulsey: Stellar Pulsation Models In Python, Andrew Ayala

Dissertations, Theses, and Capstone Projects

The era of the Kepler/K2 and TESS space-telescope missions has inundated the astrophysics community with photometric data for millions of stars with continuous observation and very high cadence. This data confirms that nearly every observed stellar source exhibits an oscillating luminosity, with stellar pulsation being the driving mechanism behind a large fraction of the cause. The result has been an explosion in the field of asteroseismology, where the recorded luminosity variations, or "light curves", of pulsating stars to probe their interior structures. By modeling observed light curves, we can constrain values of the physical stellar parameters producing them. The brightness …

Imaging Markers Of Future Neurodegeneration Following Moderate-Severe Traumatic Brain Injury, Daniel Brennan

Dissertations, Theses, and Capstone Projects

The overall goal of this dissertation was to identify patterns of cerebral atrophy following traumatic brain injury and relate relevant imaging measures to that atrophy. In Chapter 2, we outline a spatiotemporal profile of atrophy in the first year following moderate-severe TBI: prior to 3-months post injury, the frontal and temporal cortices were observed to be thinner than controls, and thalamic volumes were reduced. From 3-12 months post-injury, significant atrophy was observed in white matter, subcortical gray matter structures (including thalamus), and cortical thinning was observed in the parietal and occipital cortices.

In Chapter 3, we identified widespread white matter …

Harnessing Neural Activity To Prevent Non-Apoptotic Spinal Neurons From Microglial Phagocytosis After Motor System Injury, Jasmine L. Pathan

Dissertations, Theses, and Capstone Projects

Producing skilled, voluntary movements in humans and many animals requires the corticospinal tract, the direct motor pathway connecting the cerebral cortex with spinal cord interneurons and motor neurons in humans and many non-human primates. Spinal cord injury (SCI) typically results in corticospinal tract damage, leading to transneuronal degeneration of its interneuron targets. Complement protein C1q triggers this degenerative process and induces microglia, the innate immune cells of the central nervous system, to phagocytose non-apoptotic interneurons. We examined two classes of premotor interneurons, cholinergic (ChAT) and glutamatergic (Chx10), essential to the spinal motor circuit as they receive direct corticospinal tract inputs …

Complicity, Eliana Luxemburg-Peck

Dissertations, Theses, and Capstone Projects

What does it mean to be complicit in diffuse collective wrongs like structural racism, gender-based oppression, or environmental damage, and what responsibilities are entailed by complicity? Moral philosophers have often understood complicity to consist in some degree of inherited culpability, arising from knowing or intentional contributions to the bad acts of a primary wrongdoer. But these theories fail to explain complicity in the foregoing contexts, and cannot justify needed efforts to hold individuals accountable for unwitting contributions to systemic wrongs and injustices. In response to this gap, my dissertation defends a novel reconceptualization of complicity as participation in collectively perpetrated …

Careful Compositions And Careless Constructions, Timothy Dalton

Dissertations, Theses, and Capstone Projects

This dissertation uses digital methods to analyze a digitized archive of life writing by disabled Civil War veterans through lenses of care ethics and rhetorical genre theory. Autobiographical letters by more than 370 disabled men respond to a contest prompt open to Union veterans injured in their right arms who had to relearn penmanship. This dissertation introduces the hybrid genre of “specimens of left-hand penmanship” through several critical lenses. It critiques the rhetoric of vocational rehabilitation and examines this archive as a site for early examples of concepts from contemporary disability studies. Finally, it turns explicitly to care ethics, and …

The Influence Of Environmental Change On Genetic Diversity Across Spatial And Taxonomic Scales, Connor M. French

Dissertations, Theses, and Capstone Projects

The spatial distribution of genetic diversity is of interest to biodiversity scientists and conservationists and is a fundamental metric of biodiversity. Genetic diversity patterns across spatial and taxonomic scales contain information about population and assemblage dynamics that can convey their resilience to environmental change. Ectotherms are especially linked to their environments and may be especially sensitive to fluctuations in the environment over time. Herein, I investigate global and regional patterns of genetic diversity in two groups of ectotherms, insects and lizards, to understand the relationship between environmental change and genetic diversity, from populations to assemblages. Overall, my research aims to …

Incorporating Solvation Thermodynamic Mapping In Computer-Aided Drug Design, Yeonji Ji

Dissertations, Theses, and Capstone Projects

Advancements in computational techniques have revolutionized structure-based drug design, substantially improving the efficiency and effectiveness of the drug discovery process by reducing time, costs, and labor requirements. These advancements include various methods, such as investigating small molecule ligands binding to proteins, exploring alternative protein conformations, and solvation mapping on the protein surfaces. Among these methods, understanding the correlation between protein-ligand binding and the role of solvation is important.

A fundamental concept in protein-ligand binding is shape and electrostatic complementarity, which is complicated by the inherent flexibility of proteins. In the absence of small molecule ligands, proteins are complementary to surface …

Perceptual Expectation, Rebecca Keller

Dissertations, Theses, and Capstone Projects

You are currently seeing many things, and, hopefully, you are currently about to see many other things. Many of the things that you are about to see will not be surprising, because you expect to see them. Sometimes, though, when you expect to see one thing and are faced with another, that thing will look like the thing you expected it to be, and not like the thing it actually is. This dissertation is an attempt to get a handle on what is happening in the visual system in these instances. In particular, I am trying to figure out what …